HEADER CELL ADHESION 28-JAN-19 6JCH TITLE CRYSTAL STRUCTURE OF SPAE BASAL PILIN FROM LACTOBACILLUS RHAMNOSUS GG TITLE 2 - ORTHORHOMBIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILUS ASSEMBLY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPAE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS RHAMNOSUS GG; SOURCE 3 ORGANISM_TAXID: 568703; SOURCE 4 VARIANT: ATCC 53103 / GG; SOURCE 5 ATCC: ATCC 53103; SOURCE 6 GENE: DU507_12320; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET28B(+) KEYWDS BASAL PILINS, SPAFED PILUS, ISOPEPTIDE BONDS, PILUS ANCHORING, KEYWDS 2 SURFACE PROTEINS, PROBIOTIC, SORTASE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.K.MEGTA,A.K.MISHRA,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN REVDAT 3 22-NOV-23 6JCH 1 REMARK REVDAT 2 15-SEP-21 6JCH 1 REMARK LINK REVDAT 1 26-JUN-19 6JCH 0 JRNL AUTH A.K.MEGTA,A.K.MISHRA,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN JRNL TITL CRYSTAL STRUCTURE OF BASAL PILIN SPAE REVEALS THE MOLECULAR JRNL TITL 2 BASIS OF ITS INCORPORATION IN THE LACTOBACILLAR SPAFED JRNL TITL 3 PILUS. JRNL REF J.STRUCT.BIOL. V. 207 74 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31026587 JRNL DOI 10.1016/J.JSB.2019.04.016 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 2504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.7387 - 4.0188 1.00 2974 138 0.1708 0.2294 REMARK 3 2 4.0188 - 3.1923 1.00 2817 150 0.1662 0.1808 REMARK 3 3 3.1923 - 2.7895 1.00 2807 127 0.1815 0.2278 REMARK 3 4 2.7895 - 2.5348 1.00 2782 143 0.1833 0.2144 REMARK 3 5 2.5348 - 2.3532 1.00 2770 143 0.1879 0.2296 REMARK 3 6 2.3532 - 2.2146 1.00 2763 133 0.1814 0.2285 REMARK 3 7 2.2146 - 2.1038 1.00 2748 145 0.1732 0.2182 REMARK 3 8 2.1038 - 2.0122 1.00 2735 145 0.1790 0.1989 REMARK 3 9 2.0122 - 1.9348 1.00 2751 119 0.1797 0.2548 REMARK 3 10 1.9348 - 1.8681 1.00 2724 131 0.1967 0.2282 REMARK 3 11 1.8681 - 1.8097 1.00 2694 160 0.1929 0.2485 REMARK 3 12 1.8097 - 1.7580 1.00 2751 135 0.1800 0.2142 REMARK 3 13 1.7580 - 1.7117 1.00 2700 148 0.1856 0.2094 REMARK 3 14 1.7117 - 1.6700 1.00 2716 147 0.1856 0.2256 REMARK 3 15 1.6700 - 1.6320 1.00 2714 149 0.1863 0.2328 REMARK 3 16 1.6320 - 1.5973 1.00 2722 126 0.2049 0.2487 REMARK 3 17 1.5973 - 1.5653 0.99 2746 119 0.2265 0.2450 REMARK 3 18 1.5653 - 1.5358 0.97 2576 146 0.2365 0.2497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2563 REMARK 3 ANGLE : 0.847 3479 REMARK 3 CHIRALITY : 0.055 379 REMARK 3 PLANARITY : 0.006 465 REMARK 3 DIHEDRAL : 5.529 1552 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1582 4.8940 12.6940 REMARK 3 T TENSOR REMARK 3 T11: 0.2155 T22: 0.1195 REMARK 3 T33: 0.2348 T12: -0.0174 REMARK 3 T13: -0.0574 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.3772 L22: 1.6734 REMARK 3 L33: 2.0635 L12: 0.0201 REMARK 3 L13: 0.5108 L23: 0.0869 REMARK 3 S TENSOR REMARK 3 S11: -0.1532 S12: -0.1254 S13: 0.3715 REMARK 3 S21: 0.2024 S22: 0.0140 S23: -0.1265 REMARK 3 S31: -0.4626 S32: 0.0958 S33: 0.0858 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1708 6.3396 51.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1408 REMARK 3 T33: 0.2095 T12: -0.0039 REMARK 3 T13: 0.0034 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.1727 L22: 0.8618 REMARK 3 L33: 1.8274 L12: -0.1256 REMARK 3 L13: -0.3710 L23: 0.4325 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: 0.0819 S13: -0.1487 REMARK 3 S21: -0.0223 S22: -0.0177 S23: -0.0148 REMARK 3 S31: 0.1527 S32: 0.0075 S33: 0.0258 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JCH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97947 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.536 REMARK 200 RESOLUTION RANGE LOW (A) : 57.094 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JBV REMARK 200 REMARK 200 REMARK: THREE DIMENSIONAL PLATE SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 8.5, 0.25 M REMARK 280 SODIUM FORMATE, 25% (W/V) PEG 3350, 0.2 M SODIUM IODIDE, 0.02 M REMARK 280 L-PROLINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.69100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.12250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.76150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.12250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.69100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.76150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 GLY A 24 REMARK 465 ARG A 25 REMARK 465 ASP A 26 REMARK 465 PRO A 27 REMARK 465 ASN A 28 REMARK 465 SER A 29 REMARK 465 ARG A 46 REMARK 465 GLN A 47 REMARK 465 PRO A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 VAL A 51 REMARK 465 TRP A 52 REMARK 465 TYR A 53 REMARK 465 GLU A 54 REMARK 465 ASN A 55 REMARK 465 ASP A 56 REMARK 465 GLY A 57 REMARK 465 HIS A 58 REMARK 465 ARG A 59 REMARK 465 THR A 178 REMARK 465 GLU A 179 REMARK 465 LEU A 180 REMARK 465 VAL A 316 REMARK 465 ASP A 317 REMARK 465 ALA A 376 REMARK 465 SER A 377 REMARK 465 THR A 378 REMARK 465 THR A 379 REMARK 465 GLY A 380 REMARK 465 ASP A 381 REMARK 465 GLN A 382 REMARK 465 THR A 383 REMARK 465 ALA A 384 REMARK 465 GLY A 385 REMARK 465 PRO A 386 REMARK 465 SER A 387 REMARK 465 THR A 388 REMARK 465 THR A 389 REMARK 465 GLN A 390 REMARK 465 LEU A 391 REMARK 465 GLY A 392 REMARK 465 ASN A 393 REMARK 465 HIS A 394 REMARK 465 GLY A 395 REMARK 465 GLN A 396 REMARK 465 ASP A 397 REMARK 465 THR A 398 REMARK 465 ASN A 399 REMARK 465 GLY A 400 REMARK 465 THR A 401 REMARK 465 GLY A 402 REMARK 465 THR A 403 REMARK 465 ARG A 404 REMARK 465 THR A 405 REMARK 465 PRO A 406 REMARK 465 LYS A 407 REMARK 465 ARG A 408 REMARK 465 GLN A 409 REMARK 465 SER A 410 REMARK 465 GLY A 411 REMARK 465 TYR A 412 REMARK 465 LEU A 413 REMARK 465 PRO A 414 REMARK 465 LEU A 415 REMARK 465 GLU A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 470 ILE A 60 CG1 CG2 CD1 REMARK 470 ASP A 66 CG OD1 OD2 REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 TYR A 70 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LEU A 72 CG CD1 CD2 REMARK 470 LEU A 73 CG CD1 CD2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 103 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 146 CG CD1 CD2 REMARK 470 SER A 177 OG REMARK 470 ASN A 181 CG OD1 ND2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 ASP A 263 CG OD1 OD2 REMARK 470 LEU A 264 CG CD1 CD2 REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 SER A 320 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 30.73 -92.32 REMARK 500 VAL A 172 -164.39 -122.19 REMARK 500 ASP A 263 -138.61 56.41 REMARK 500 ASP A 273 73.37 -171.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 984 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 985 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 110 O REMARK 620 2 SER A 189 OG 90.0 REMARK 620 3 HOH A 652 O 76.8 91.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 221 OD1 REMARK 620 2 THR A 293 OG1 124.0 REMARK 620 3 GLY A 294 O 103.0 131.6 REMARK 620 4 ARG A 296 O 87.9 84.7 86.0 REMARK 620 5 HOH A 772 O 100.9 91.9 90.1 171.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 346 OE1 REMARK 620 2 HOH A 650 O 131.1 REMARK 620 3 HOH A 906 O 84.1 115.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6JBV RELATED DB: PDB REMARK 900 SELENIUM DERIVATIVE OF SAME PROTEIN REMARK 900 RELATED ID: 6JK7 RELATED DB: PDB REMARK 900 TRIGONAL FORM OF SAME PROTEIN DBREF1 6JCH A 30 414 UNP A0A345U425_LACRG DBREF2 6JCH A A0A345U425 30 414 SEQADV 6JCH MET A 23 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH GLY A 24 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH ARG A 25 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH ASP A 26 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH PRO A 27 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH ASN A 28 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH SER A 29 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH LEU A 415 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH GLU A 416 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH HIS A 417 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH HIS A 418 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH HIS A 419 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH HIS A 420 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH HIS A 421 UNP A0A345U42 EXPRESSION TAG SEQADV 6JCH HIS A 422 UNP A0A345U42 EXPRESSION TAG SEQRES 1 A 400 MET GLY ARG ASP PRO ASN SER ASP GLN THR ALA GLU ILE SEQRES 2 A 400 VAL ILE HIS LYS ARG ILE TYR ARG ASP ILE ARG GLN PRO SEQRES 3 A 400 GLU ASP VAL TRP TYR GLU ASN ASP GLY HIS ARG ILE ASP SEQRES 4 A 400 PRO ASN ASN PRO ASP LYS ASP GLY TYR LYS LEU LEU SER SEQRES 5 A 400 LYS THR SER GLY LEU ASN GLY ALA ASN PHE GLU VAL TYR SEQRES 6 A 400 ASP ALA SER SER LEU LEU LYS PRO ASN MET THR PRO GLU SEQRES 7 A 400 ALA ILE ARG ALA LEU VAL ASP ARG TYR GLN ASN MET THR SEQRES 8 A 400 ARG LYS GLN ALA LEU LYS PHE ALA ARG ALA ASN LEU LYS SEQRES 9 A 400 LEU ALA GLY GLN GLY ASN LYS GLY ILE GLY LEU MET ASN SEQRES 10 A 400 THR LYS ASN ASP PRO THR LEU GLY GLU ASP GLY ILE SER SEQRES 11 A 400 ARG ILE THR VAL SER VAL ASP GLN GLN ALA PRO THR LYS SEQRES 12 A 400 ALA TYR LEU MET ILE GLU VAL ALA PRO ASP PRO SER THR SEQRES 13 A 400 GLU LEU ASN VAL ASP LEU GLU ARG LYS SER SER PRO MET SEQRES 14 A 400 LEU VAL VAL PHE PRO VAL THR ASP PRO ILE SER GLY ASN SEQRES 15 A 400 PRO LEU GLN THR ILE HIS LEU TYR PRO LYS ASN VAL GLY SEQRES 16 A 400 TYR VAL ARG ASP PRO TYR PHE PHE LYS PHE GLY VAL HIS SEQRES 17 A 400 PRO ASP GLY THR SER LYS ARG LEU ALA GLY ALA ILE PHE SEQRES 18 A 400 ALA ILE TYR ARG ILE GLU ASN GLY LYS LYS LEU TYR LEU SEQRES 19 A 400 ASP MET SER PRO VAL THR ASP LEU ARG ASN LYS TRP VAL SEQRES 20 A 400 SER THR THR ASP PRO LEU HIS ASP ASP ARG VAL ASN LYS SEQRES 21 A 400 PHE VAL SER ASP GLN ASP GLY LEU VAL ASN THR GLY GLU SEQRES 22 A 400 ARG PHE LEU PRO ALA GLY GLU TYR PHE PHE GLU GLU LEU SEQRES 23 A 400 GLN GLY VAL PRO GLY TYR GLU VAL ASP ALA LYS SER ARG SEQRES 24 A 400 ALA ILE LYS ILE GLU ILE PRO ASP SER TRP GLU ASP GLU SEQRES 25 A 400 ASP GLY ASN ARG ARG PHE VAL LEU ILE ASP GLY GLN PRO SEQRES 26 A 400 MET GLN GLU ASN PHE GLY GLY VAL VAL THR PRO GLU MET SEQRES 27 A 400 ILE SER SER GLY TYR PRO ARG VAL TYR ASN TYR ALA ASP SEQRES 28 A 400 LYS GLN ALA SER THR THR GLY ASP GLN THR ALA GLY PRO SEQRES 29 A 400 SER THR THR GLN LEU GLY ASN HIS GLY GLN ASP THR ASN SEQRES 30 A 400 GLY THR GLY THR ARG THR PRO LYS ARG GLN SER GLY TYR SEQRES 31 A 400 LEU PRO LEU GLU HIS HIS HIS HIS HIS HIS HET NA A 501 1 HET NA A 502 1 HET NA A 503 1 HETNAM NA SODIUM ION FORMUL 2 NA 3(NA 1+) FORMUL 5 HOH *385(H2 O) HELIX 1 AA1 SER A 90 LEU A 93 5 4 HELIX 2 AA2 THR A 98 MET A 112 1 15 HELIX 3 AA3 THR A 113 LEU A 125 1 13 HELIX 4 AA4 THR A 357 GLY A 364 1 8 SHEET 1 AA1 4 LYS A 141 ASP A 143 0 SHEET 2 AA1 4 GLU A 148 SER A 157 -1 O GLU A 148 N ASP A 143 SHEET 3 AA1 4 THR A 32 HIS A 38 -1 N ILE A 37 O SER A 152 SHEET 4 AA1 4 THR A 208 LEU A 211 1 O ILE A 209 N VAL A 36 SHEET 1 AA2 4 TYR A 70 LEU A 72 0 SHEET 2 AA2 4 ARG A 40 ASP A 44 -1 N ARG A 43 O LYS A 71 SHEET 3 AA2 4 LYS A 214 VAL A 216 1 O ASN A 215 N TYR A 42 SHEET 4 AA2 4 GLU A 185 ARG A 186 -1 N GLU A 185 O VAL A 216 SHEET 1 AA3 4 LEU A 137 ASN A 139 0 SHEET 2 AA3 4 ASN A 83 ASP A 88 -1 N PHE A 84 O MET A 138 SHEET 3 AA3 4 LYS A 165 VAL A 172 -1 O VAL A 172 N ASN A 83 SHEET 4 AA3 4 MET A 191 PHE A 195 -1 O VAL A 193 N TYR A 167 SHEET 1 AA4 3 SER A 235 ARG A 237 0 SHEET 2 AA4 3 TYR A 223 VAL A 229 -1 N GLY A 228 O LYS A 236 SHEET 3 AA4 3 LEU A 290 ASN A 292 -1 O VAL A 291 N PHE A 224 SHEET 1 AA5 3 SER A 235 ARG A 237 0 SHEET 2 AA5 3 TYR A 223 VAL A 229 -1 N GLY A 228 O LYS A 236 SHEET 3 AA5 3 ARG A 367 TYR A 371 1 O ASN A 370 N PHE A 227 SHEET 1 AA6 4 TRP A 268 VAL A 269 0 SHEET 2 AA6 4 LYS A 252 LEU A 256 -1 N TYR A 255 O VAL A 269 SHEET 3 AA6 4 ILE A 242 GLU A 249 -1 N ILE A 245 O LEU A 256 SHEET 4 AA6 4 PHE A 283 VAL A 284 -1 O PHE A 283 N PHE A 243 SHEET 1 AA7 7 TRP A 268 VAL A 269 0 SHEET 2 AA7 7 LYS A 252 LEU A 256 -1 N TYR A 255 O VAL A 269 SHEET 3 AA7 7 ILE A 242 GLU A 249 -1 N ILE A 245 O LEU A 256 SHEET 4 AA7 7 GLY A 301 GLN A 309 -1 O LEU A 308 N ILE A 242 SHEET 5 AA7 7 ALA A 322 ILE A 327 -1 O ILE A 323 N PHE A 305 SHEET 6 AA7 7 VAL A 341 ILE A 343 -1 O LEU A 342 N GLU A 326 SHEET 7 AA7 7 GLN A 346 MET A 348 -1 O GLN A 346 N ILE A 343 LINK NZ LYS A 39 CG ASN A 215 1555 1555 1.32 LINK NZ LYS A 226 CG ASN A 370 1555 1555 1.30 LINK O GLN A 110 NA NA A 503 1555 1555 2.55 LINK OG SER A 189 NA NA A 503 1555 1555 2.46 LINK OD1 ASP A 221 NA NA A 501 1555 1555 2.24 LINK OG1 THR A 293 NA NA A 501 1555 1555 2.41 LINK O GLY A 294 NA NA A 501 1555 1555 2.34 LINK O ARG A 296 NA NA A 501 1555 1555 2.30 LINK OE1 GLN A 346 NA NA A 502 1555 1555 2.19 LINK NA NA A 501 O HOH A 772 1555 1555 2.39 LINK NA NA A 502 O HOH A 650 1555 1555 2.78 LINK NA NA A 502 O HOH A 906 1555 1555 2.70 LINK NA NA A 503 O HOH A 652 1555 1555 2.27 CISPEP 1 PHE A 195 PRO A 196 0 -3.37 CISPEP 2 TYR A 365 PRO A 366 0 -2.28 SITE 1 AC1 5 ASP A 221 THR A 293 GLY A 294 ARG A 296 SITE 2 AC1 5 HOH A 772 SITE 1 AC2 7 SER A 91 GLN A 346 TYR A 365 PRO A 366 SITE 2 AC2 7 ARG A 367 HOH A 650 HOH A 906 SITE 1 AC3 3 GLN A 110 SER A 189 HOH A 652 CRYST1 41.382 63.523 130.245 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007678 0.00000