data_6JCS # _entry.id 6JCS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JCS pdb_00006jcs 10.2210/pdb6jcs/pdb WWPDB D_1300010880 ? ? EMDB EMD-9796 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-14 2 'Structure model' 1 1 2019-10-02 3 'Structure model' 1 2 2019-11-06 4 'Structure model' 1 3 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' cell 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_cell.Z_PDB' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' 15 4 'Structure model' '_pdbx_struct_oper_list.name' 16 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 17 4 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JCS _pdbx_database_status.recvd_initial_deposition_date 2019-01-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'AAV5 in complex a ligand' _pdbx_database_related.db_id EMD-9796 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lou, Z.' 1 ? 'Zhang, R.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 3760 _citation.page_last 3760 _citation.title 'Divergent engagements between adeno-associated viruses with their cellular receptor AAVR.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-11668-x _citation.pdbx_database_id_PubMed 31434885 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, R.' 1 ? primary 'Xu, G.' 2 ? primary 'Cao, L.' 3 ? primary 'Sun, Z.' 4 ? primary 'He, Y.' 5 ? primary 'Cui, M.' 6 ? primary 'Sun, Y.' 7 ? primary 'Li, S.' 8 ? primary 'Li, H.' 9 ? primary 'Qin, L.' 10 ? primary 'Hu, M.' 11 ? primary 'Yuan, Z.' 12 ? primary 'Rao, Z.' 13 ? primary 'Ding, W.' 14 ? primary 'Rao, Z.' 15 ? primary 'Lou, Z.' 16 0000-0003-2728-881X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Capsid protein' 58213.078 1 ? ? ? ? 2 polymer man 'Dyslexia-associated protein KIAA0319-like protein' 10911.322 1 ? ? PKD1 ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Adeno-associated virus receptor,AAVR' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DGVGNASGDWHCDSTWMGDRVVTKSTRTWVLPSYNNHQYREIKSGSVDGSNANAYFGYSTPWGYFDFNRFHSHWSPRDWQ RLINNYWGFRPRSLRVKIFNIQVKEVTVQDSTTTIANNLTSTVQVFTDDDYQLPYVVGNGTEGCLPAFPPQVFTLPQYGY ATLNRDNTENPTERSSFFCLEYFPSKMLRTGNNFEFTYNFEEVPFHSSFAPSQNLFKLANPLVDQYLYRFVSTNNTGGVQ FNKNLAGRYANTYKNWFPGPMGRTQGWNLGSGVNRASVSAFATTNRMELEGASYQVPPQPNGMTNNLQGSNTYALENTMI FNSQPANPGTTATYLEGNMLITSESETQPVNRVAYNVGGQMATNNQSSTTAPATGTYNLQEIVPGSVWMERDVYLQGPIW AKIPETGAHFHPSPAMGGFGLKHPPPMMLIKNTPVPGNITSFSDVPVSSFITQYSTGQVTVEMEWELKKENSKRWNPEIQ YTNNYNDPQFVDFAPDSTGEYRTTRPIGTRYLTRPL ; ;DGVGNASGDWHCDSTWMGDRVVTKSTRTWVLPSYNNHQYREIKSGSVDGSNANAYFGYSTPWGYFDFNRFHSHWSPRDWQ RLINNYWGFRPRSLRVKIFNIQVKEVTVQDSTTTIANNLTSTVQVFTDDDYQLPYVVGNGTEGCLPAFPPQVFTLPQYGY ATLNRDNTENPTERSSFFCLEYFPSKMLRTGNNFEFTYNFEEVPFHSSFAPSQNLFKLANPLVDQYLYRFVSTNNTGGVQ FNKNLAGRYANTYKNWFPGPMGRTQGWNLGSGVNRASVSAFATTNRMELEGASYQVPPQPNGMTNNLQGSNTYALENTMI FNSQPANPGTTATYLEGNMLITSESETQPVNRVAYNVGGQMATNNQSSTTAPATGTYNLQEIVPGSVWMERDVYLQGPIW AKIPETGAHFHPSPAMGGFGLKHPPPMMLIKNTPVPGNITSFSDVPVSSFITQYSTGQVTVEMEWELKKENSKRWNPEIQ YTNNYNDPQFVDFAPDSTGEYRTTRPIGTRYLTRPL ; A ? 2 'polypeptide(L)' no no ;VIKELVVSAGESVQITLPKNEVQLNAYVLQEPPKGETYTYDWQLITHPRDYSGEMEGKHSQILKLSKLTPGLYEFKVIVE GQNAHGEGYVNVTVKPE ; ;VIKELVVSAGESVQITLPKNEVQLNAYVLQEPPKGETYTYDWQLITHPRDYSGEMEGKHSQILKLSKLTPGLYEFKVIVE GQNAHGEGYVNVTVKPE ; R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLY n 1 3 VAL n 1 4 GLY n 1 5 ASN n 1 6 ALA n 1 7 SER n 1 8 GLY n 1 9 ASP n 1 10 TRP n 1 11 HIS n 1 12 CYS n 1 13 ASP n 1 14 SER n 1 15 THR n 1 16 TRP n 1 17 MET n 1 18 GLY n 1 19 ASP n 1 20 ARG n 1 21 VAL n 1 22 VAL n 1 23 THR n 1 24 LYS n 1 25 SER n 1 26 THR n 1 27 ARG n 1 28 THR n 1 29 TRP n 1 30 VAL n 1 31 LEU n 1 32 PRO n 1 33 SER n 1 34 TYR n 1 35 ASN n 1 36 ASN n 1 37 HIS n 1 38 GLN n 1 39 TYR n 1 40 ARG n 1 41 GLU n 1 42 ILE n 1 43 LYS n 1 44 SER n 1 45 GLY n 1 46 SER n 1 47 VAL n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 ASN n 1 52 ALA n 1 53 ASN n 1 54 ALA n 1 55 TYR n 1 56 PHE n 1 57 GLY n 1 58 TYR n 1 59 SER n 1 60 THR n 1 61 PRO n 1 62 TRP n 1 63 GLY n 1 64 TYR n 1 65 PHE n 1 66 ASP n 1 67 PHE n 1 68 ASN n 1 69 ARG n 1 70 PHE n 1 71 HIS n 1 72 SER n 1 73 HIS n 1 74 TRP n 1 75 SER n 1 76 PRO n 1 77 ARG n 1 78 ASP n 1 79 TRP n 1 80 GLN n 1 81 ARG n 1 82 LEU n 1 83 ILE n 1 84 ASN n 1 85 ASN n 1 86 TYR n 1 87 TRP n 1 88 GLY n 1 89 PHE n 1 90 ARG n 1 91 PRO n 1 92 ARG n 1 93 SER n 1 94 LEU n 1 95 ARG n 1 96 VAL n 1 97 LYS n 1 98 ILE n 1 99 PHE n 1 100 ASN n 1 101 ILE n 1 102 GLN n 1 103 VAL n 1 104 LYS n 1 105 GLU n 1 106 VAL n 1 107 THR n 1 108 VAL n 1 109 GLN n 1 110 ASP n 1 111 SER n 1 112 THR n 1 113 THR n 1 114 THR n 1 115 ILE n 1 116 ALA n 1 117 ASN n 1 118 ASN n 1 119 LEU n 1 120 THR n 1 121 SER n 1 122 THR n 1 123 VAL n 1 124 GLN n 1 125 VAL n 1 126 PHE n 1 127 THR n 1 128 ASP n 1 129 ASP n 1 130 ASP n 1 131 TYR n 1 132 GLN n 1 133 LEU n 1 134 PRO n 1 135 TYR n 1 136 VAL n 1 137 VAL n 1 138 GLY n 1 139 ASN n 1 140 GLY n 1 141 THR n 1 142 GLU n 1 143 GLY n 1 144 CYS n 1 145 LEU n 1 146 PRO n 1 147 ALA n 1 148 PHE n 1 149 PRO n 1 150 PRO n 1 151 GLN n 1 152 VAL n 1 153 PHE n 1 154 THR n 1 155 LEU n 1 156 PRO n 1 157 GLN n 1 158 TYR n 1 159 GLY n 1 160 TYR n 1 161 ALA n 1 162 THR n 1 163 LEU n 1 164 ASN n 1 165 ARG n 1 166 ASP n 1 167 ASN n 1 168 THR n 1 169 GLU n 1 170 ASN n 1 171 PRO n 1 172 THR n 1 173 GLU n 1 174 ARG n 1 175 SER n 1 176 SER n 1 177 PHE n 1 178 PHE n 1 179 CYS n 1 180 LEU n 1 181 GLU n 1 182 TYR n 1 183 PHE n 1 184 PRO n 1 185 SER n 1 186 LYS n 1 187 MET n 1 188 LEU n 1 189 ARG n 1 190 THR n 1 191 GLY n 1 192 ASN n 1 193 ASN n 1 194 PHE n 1 195 GLU n 1 196 PHE n 1 197 THR n 1 198 TYR n 1 199 ASN n 1 200 PHE n 1 201 GLU n 1 202 GLU n 1 203 VAL n 1 204 PRO n 1 205 PHE n 1 206 HIS n 1 207 SER n 1 208 SER n 1 209 PHE n 1 210 ALA n 1 211 PRO n 1 212 SER n 1 213 GLN n 1 214 ASN n 1 215 LEU n 1 216 PHE n 1 217 LYS n 1 218 LEU n 1 219 ALA n 1 220 ASN n 1 221 PRO n 1 222 LEU n 1 223 VAL n 1 224 ASP n 1 225 GLN n 1 226 TYR n 1 227 LEU n 1 228 TYR n 1 229 ARG n 1 230 PHE n 1 231 VAL n 1 232 SER n 1 233 THR n 1 234 ASN n 1 235 ASN n 1 236 THR n 1 237 GLY n 1 238 GLY n 1 239 VAL n 1 240 GLN n 1 241 PHE n 1 242 ASN n 1 243 LYS n 1 244 ASN n 1 245 LEU n 1 246 ALA n 1 247 GLY n 1 248 ARG n 1 249 TYR n 1 250 ALA n 1 251 ASN n 1 252 THR n 1 253 TYR n 1 254 LYS n 1 255 ASN n 1 256 TRP n 1 257 PHE n 1 258 PRO n 1 259 GLY n 1 260 PRO n 1 261 MET n 1 262 GLY n 1 263 ARG n 1 264 THR n 1 265 GLN n 1 266 GLY n 1 267 TRP n 1 268 ASN n 1 269 LEU n 1 270 GLY n 1 271 SER n 1 272 GLY n 1 273 VAL n 1 274 ASN n 1 275 ARG n 1 276 ALA n 1 277 SER n 1 278 VAL n 1 279 SER n 1 280 ALA n 1 281 PHE n 1 282 ALA n 1 283 THR n 1 284 THR n 1 285 ASN n 1 286 ARG n 1 287 MET n 1 288 GLU n 1 289 LEU n 1 290 GLU n 1 291 GLY n 1 292 ALA n 1 293 SER n 1 294 TYR n 1 295 GLN n 1 296 VAL n 1 297 PRO n 1 298 PRO n 1 299 GLN n 1 300 PRO n 1 301 ASN n 1 302 GLY n 1 303 MET n 1 304 THR n 1 305 ASN n 1 306 ASN n 1 307 LEU n 1 308 GLN n 1 309 GLY n 1 310 SER n 1 311 ASN n 1 312 THR n 1 313 TYR n 1 314 ALA n 1 315 LEU n 1 316 GLU n 1 317 ASN n 1 318 THR n 1 319 MET n 1 320 ILE n 1 321 PHE n 1 322 ASN n 1 323 SER n 1 324 GLN n 1 325 PRO n 1 326 ALA n 1 327 ASN n 1 328 PRO n 1 329 GLY n 1 330 THR n 1 331 THR n 1 332 ALA n 1 333 THR n 1 334 TYR n 1 335 LEU n 1 336 GLU n 1 337 GLY n 1 338 ASN n 1 339 MET n 1 340 LEU n 1 341 ILE n 1 342 THR n 1 343 SER n 1 344 GLU n 1 345 SER n 1 346 GLU n 1 347 THR n 1 348 GLN n 1 349 PRO n 1 350 VAL n 1 351 ASN n 1 352 ARG n 1 353 VAL n 1 354 ALA n 1 355 TYR n 1 356 ASN n 1 357 VAL n 1 358 GLY n 1 359 GLY n 1 360 GLN n 1 361 MET n 1 362 ALA n 1 363 THR n 1 364 ASN n 1 365 ASN n 1 366 GLN n 1 367 SER n 1 368 SER n 1 369 THR n 1 370 THR n 1 371 ALA n 1 372 PRO n 1 373 ALA n 1 374 THR n 1 375 GLY n 1 376 THR n 1 377 TYR n 1 378 ASN n 1 379 LEU n 1 380 GLN n 1 381 GLU n 1 382 ILE n 1 383 VAL n 1 384 PRO n 1 385 GLY n 1 386 SER n 1 387 VAL n 1 388 TRP n 1 389 MET n 1 390 GLU n 1 391 ARG n 1 392 ASP n 1 393 VAL n 1 394 TYR n 1 395 LEU n 1 396 GLN n 1 397 GLY n 1 398 PRO n 1 399 ILE n 1 400 TRP n 1 401 ALA n 1 402 LYS n 1 403 ILE n 1 404 PRO n 1 405 GLU n 1 406 THR n 1 407 GLY n 1 408 ALA n 1 409 HIS n 1 410 PHE n 1 411 HIS n 1 412 PRO n 1 413 SER n 1 414 PRO n 1 415 ALA n 1 416 MET n 1 417 GLY n 1 418 GLY n 1 419 PHE n 1 420 GLY n 1 421 LEU n 1 422 LYS n 1 423 HIS n 1 424 PRO n 1 425 PRO n 1 426 PRO n 1 427 MET n 1 428 MET n 1 429 LEU n 1 430 ILE n 1 431 LYS n 1 432 ASN n 1 433 THR n 1 434 PRO n 1 435 VAL n 1 436 PRO n 1 437 GLY n 1 438 ASN n 1 439 ILE n 1 440 THR n 1 441 SER n 1 442 PHE n 1 443 SER n 1 444 ASP n 1 445 VAL n 1 446 PRO n 1 447 VAL n 1 448 SER n 1 449 SER n 1 450 PHE n 1 451 ILE n 1 452 THR n 1 453 GLN n 1 454 TYR n 1 455 SER n 1 456 THR n 1 457 GLY n 1 458 GLN n 1 459 VAL n 1 460 THR n 1 461 VAL n 1 462 GLU n 1 463 MET n 1 464 GLU n 1 465 TRP n 1 466 GLU n 1 467 LEU n 1 468 LYS n 1 469 LYS n 1 470 GLU n 1 471 ASN n 1 472 SER n 1 473 LYS n 1 474 ARG n 1 475 TRP n 1 476 ASN n 1 477 PRO n 1 478 GLU n 1 479 ILE n 1 480 GLN n 1 481 TYR n 1 482 THR n 1 483 ASN n 1 484 ASN n 1 485 TYR n 1 486 ASN n 1 487 ASP n 1 488 PRO n 1 489 GLN n 1 490 PHE n 1 491 VAL n 1 492 ASP n 1 493 PHE n 1 494 ALA n 1 495 PRO n 1 496 ASP n 1 497 SER n 1 498 THR n 1 499 GLY n 1 500 GLU n 1 501 TYR n 1 502 ARG n 1 503 THR n 1 504 THR n 1 505 ARG n 1 506 PRO n 1 507 ILE n 1 508 GLY n 1 509 THR n 1 510 ARG n 1 511 TYR n 1 512 LEU n 1 513 THR n 1 514 ARG n 1 515 PRO n 1 516 LEU n 2 1 VAL n 2 2 ILE n 2 3 LYS n 2 4 GLU n 2 5 LEU n 2 6 VAL n 2 7 VAL n 2 8 SER n 2 9 ALA n 2 10 GLY n 2 11 GLU n 2 12 SER n 2 13 VAL n 2 14 GLN n 2 15 ILE n 2 16 THR n 2 17 LEU n 2 18 PRO n 2 19 LYS n 2 20 ASN n 2 21 GLU n 2 22 VAL n 2 23 GLN n 2 24 LEU n 2 25 ASN n 2 26 ALA n 2 27 TYR n 2 28 VAL n 2 29 LEU n 2 30 GLN n 2 31 GLU n 2 32 PRO n 2 33 PRO n 2 34 LYS n 2 35 GLY n 2 36 GLU n 2 37 THR n 2 38 TYR n 2 39 THR n 2 40 TYR n 2 41 ASP n 2 42 TRP n 2 43 GLN n 2 44 LEU n 2 45 ILE n 2 46 THR n 2 47 HIS n 2 48 PRO n 2 49 ARG n 2 50 ASP n 2 51 TYR n 2 52 SER n 2 53 GLY n 2 54 GLU n 2 55 MET n 2 56 GLU n 2 57 GLY n 2 58 LYS n 2 59 HIS n 2 60 SER n 2 61 GLN n 2 62 ILE n 2 63 LEU n 2 64 LYS n 2 65 LEU n 2 66 SER n 2 67 LYS n 2 68 LEU n 2 69 THR n 2 70 PRO n 2 71 GLY n 2 72 LEU n 2 73 TYR n 2 74 GLU n 2 75 PHE n 2 76 LYS n 2 77 VAL n 2 78 ILE n 2 79 VAL n 2 80 GLU n 2 81 GLY n 2 82 GLN n 2 83 ASN n 2 84 ALA n 2 85 HIS n 2 86 GLY n 2 87 GLU n 2 88 GLY n 2 89 TYR n 2 90 VAL n 2 91 ASN n 2 92 VAL n 2 93 THR n 2 94 VAL n 2 95 LYS n 2 96 PRO n 2 97 GLU n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 97 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KIAA0319L, AAVR, KIAA1837, PP791' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 516 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Adeno-associated virus - 5' _entity_src_nat.pdbx_ncbi_taxonomy_id 82300 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 209 209 ASP ASP A . n A 1 2 GLY 2 210 210 GLY GLY A . n A 1 3 VAL 3 211 211 VAL VAL A . n A 1 4 GLY 4 212 212 GLY GLY A . n A 1 5 ASN 5 213 213 ASN ASN A . n A 1 6 ALA 6 214 214 ALA ALA A . n A 1 7 SER 7 215 215 SER SER A . n A 1 8 GLY 8 216 216 GLY GLY A . n A 1 9 ASP 9 217 217 ASP ASP A . n A 1 10 TRP 10 218 218 TRP TRP A . n A 1 11 HIS 11 219 219 HIS HIS A . n A 1 12 CYS 12 220 220 CYS CYS A . n A 1 13 ASP 13 221 221 ASP ASP A . n A 1 14 SER 14 222 222 SER SER A . n A 1 15 THR 15 223 223 THR THR A . n A 1 16 TRP 16 224 224 TRP TRP A . n A 1 17 MET 17 225 225 MET MET A . n A 1 18 GLY 18 226 226 GLY GLY A . n A 1 19 ASP 19 227 227 ASP ASP A . n A 1 20 ARG 20 228 228 ARG ARG A . n A 1 21 VAL 21 229 229 VAL VAL A . n A 1 22 VAL 22 230 230 VAL VAL A . n A 1 23 THR 23 231 231 THR THR A . n A 1 24 LYS 24 232 232 LYS LYS A . n A 1 25 SER 25 233 233 SER SER A . n A 1 26 THR 26 234 234 THR THR A . n A 1 27 ARG 27 235 235 ARG ARG A . n A 1 28 THR 28 236 236 THR THR A . n A 1 29 TRP 29 237 237 TRP TRP A . n A 1 30 VAL 30 238 238 VAL VAL A . n A 1 31 LEU 31 239 239 LEU LEU A . n A 1 32 PRO 32 240 240 PRO PRO A . n A 1 33 SER 33 241 241 SER SER A . n A 1 34 TYR 34 242 242 TYR TYR A . n A 1 35 ASN 35 243 243 ASN ASN A . n A 1 36 ASN 36 244 244 ASN ASN A . n A 1 37 HIS 37 245 245 HIS HIS A . n A 1 38 GLN 38 246 246 GLN GLN A . n A 1 39 TYR 39 247 247 TYR TYR A . n A 1 40 ARG 40 248 248 ARG ARG A . n A 1 41 GLU 41 249 249 GLU GLU A . n A 1 42 ILE 42 250 250 ILE ILE A . n A 1 43 LYS 43 251 251 LYS LYS A . n A 1 44 SER 44 252 252 SER SER A . n A 1 45 GLY 45 253 253 GLY GLY A . n A 1 46 SER 46 254 254 SER SER A . n A 1 47 VAL 47 255 255 VAL VAL A . n A 1 48 ASP 48 256 256 ASP ASP A . n A 1 49 GLY 49 257 257 GLY GLY A . n A 1 50 SER 50 258 258 SER SER A . n A 1 51 ASN 51 259 259 ASN ASN A . n A 1 52 ALA 52 260 260 ALA ALA A . n A 1 53 ASN 53 261 261 ASN ASN A . n A 1 54 ALA 54 262 262 ALA ALA A . n A 1 55 TYR 55 263 263 TYR TYR A . n A 1 56 PHE 56 264 264 PHE PHE A . n A 1 57 GLY 57 265 265 GLY GLY A . n A 1 58 TYR 58 266 266 TYR TYR A . n A 1 59 SER 59 267 267 SER SER A . n A 1 60 THR 60 268 268 THR THR A . n A 1 61 PRO 61 269 269 PRO PRO A . n A 1 62 TRP 62 270 270 TRP TRP A . n A 1 63 GLY 63 271 271 GLY GLY A . n A 1 64 TYR 64 272 272 TYR TYR A . n A 1 65 PHE 65 273 273 PHE PHE A . n A 1 66 ASP 66 274 274 ASP ASP A . n A 1 67 PHE 67 275 275 PHE PHE A . n A 1 68 ASN 68 276 276 ASN ASN A . n A 1 69 ARG 69 277 277 ARG ARG A . n A 1 70 PHE 70 278 278 PHE PHE A . n A 1 71 HIS 71 279 279 HIS HIS A . n A 1 72 SER 72 280 280 SER SER A . n A 1 73 HIS 73 281 281 HIS HIS A . n A 1 74 TRP 74 282 282 TRP TRP A . n A 1 75 SER 75 283 283 SER SER A . n A 1 76 PRO 76 284 284 PRO PRO A . n A 1 77 ARG 77 285 285 ARG ARG A . n A 1 78 ASP 78 286 286 ASP ASP A . n A 1 79 TRP 79 287 287 TRP TRP A . n A 1 80 GLN 80 288 288 GLN GLN A . n A 1 81 ARG 81 289 289 ARG ARG A . n A 1 82 LEU 82 290 290 LEU LEU A . n A 1 83 ILE 83 291 291 ILE ILE A . n A 1 84 ASN 84 292 292 ASN ASN A . n A 1 85 ASN 85 293 293 ASN ASN A . n A 1 86 TYR 86 294 294 TYR TYR A . n A 1 87 TRP 87 295 295 TRP TRP A . n A 1 88 GLY 88 296 296 GLY GLY A . n A 1 89 PHE 89 297 297 PHE PHE A . n A 1 90 ARG 90 298 298 ARG ARG A . n A 1 91 PRO 91 299 299 PRO PRO A . n A 1 92 ARG 92 300 300 ARG ARG A . n A 1 93 SER 93 301 301 SER SER A . n A 1 94 LEU 94 302 302 LEU LEU A . n A 1 95 ARG 95 303 303 ARG ARG A . n A 1 96 VAL 96 304 304 VAL VAL A . n A 1 97 LYS 97 305 305 LYS LYS A . n A 1 98 ILE 98 306 306 ILE ILE A . n A 1 99 PHE 99 307 307 PHE PHE A . n A 1 100 ASN 100 308 308 ASN ASN A . n A 1 101 ILE 101 309 309 ILE ILE A . n A 1 102 GLN 102 310 310 GLN GLN A . n A 1 103 VAL 103 311 311 VAL VAL A . n A 1 104 LYS 104 312 312 LYS LYS A . n A 1 105 GLU 105 313 313 GLU GLU A . n A 1 106 VAL 106 314 314 VAL VAL A . n A 1 107 THR 107 315 315 THR THR A . n A 1 108 VAL 108 316 316 VAL VAL A . n A 1 109 GLN 109 317 317 GLN GLN A . n A 1 110 ASP 110 318 318 ASP ASP A . n A 1 111 SER 111 319 319 SER SER A . n A 1 112 THR 112 320 320 THR THR A . n A 1 113 THR 113 321 321 THR THR A . n A 1 114 THR 114 322 322 THR THR A . n A 1 115 ILE 115 323 323 ILE ILE A . n A 1 116 ALA 116 324 324 ALA ALA A . n A 1 117 ASN 117 325 325 ASN ASN A . n A 1 118 ASN 118 326 326 ASN ASN A . n A 1 119 LEU 119 327 327 LEU LEU A . n A 1 120 THR 120 328 328 THR THR A . n A 1 121 SER 121 329 329 SER SER A . n A 1 122 THR 122 330 330 THR THR A . n A 1 123 VAL 123 331 331 VAL VAL A . n A 1 124 GLN 124 332 332 GLN GLN A . n A 1 125 VAL 125 333 333 VAL VAL A . n A 1 126 PHE 126 334 334 PHE PHE A . n A 1 127 THR 127 335 335 THR THR A . n A 1 128 ASP 128 336 336 ASP ASP A . n A 1 129 ASP 129 337 337 ASP ASP A . n A 1 130 ASP 130 338 338 ASP ASP A . n A 1 131 TYR 131 339 339 TYR TYR A . n A 1 132 GLN 132 340 340 GLN GLN A . n A 1 133 LEU 133 341 341 LEU LEU A . n A 1 134 PRO 134 342 342 PRO PRO A . n A 1 135 TYR 135 343 343 TYR TYR A . n A 1 136 VAL 136 344 344 VAL VAL A . n A 1 137 VAL 137 345 345 VAL VAL A . n A 1 138 GLY 138 346 346 GLY GLY A . n A 1 139 ASN 139 347 347 ASN ASN A . n A 1 140 GLY 140 348 348 GLY GLY A . n A 1 141 THR 141 349 349 THR THR A . n A 1 142 GLU 142 350 350 GLU GLU A . n A 1 143 GLY 143 351 351 GLY GLY A . n A 1 144 CYS 144 352 352 CYS CYS A . n A 1 145 LEU 145 353 353 LEU LEU A . n A 1 146 PRO 146 354 354 PRO PRO A . n A 1 147 ALA 147 355 355 ALA ALA A . n A 1 148 PHE 148 356 356 PHE PHE A . n A 1 149 PRO 149 357 357 PRO PRO A . n A 1 150 PRO 150 358 358 PRO PRO A . n A 1 151 GLN 151 359 359 GLN GLN A . n A 1 152 VAL 152 360 360 VAL VAL A . n A 1 153 PHE 153 361 361 PHE PHE A . n A 1 154 THR 154 362 362 THR THR A . n A 1 155 LEU 155 363 363 LEU LEU A . n A 1 156 PRO 156 364 364 PRO PRO A . n A 1 157 GLN 157 365 365 GLN GLN A . n A 1 158 TYR 158 366 366 TYR TYR A . n A 1 159 GLY 159 367 367 GLY GLY A . n A 1 160 TYR 160 368 368 TYR TYR A . n A 1 161 ALA 161 369 369 ALA ALA A . n A 1 162 THR 162 370 370 THR THR A . n A 1 163 LEU 163 371 371 LEU LEU A . n A 1 164 ASN 164 372 372 ASN ASN A . n A 1 165 ARG 165 373 373 ARG ARG A . n A 1 166 ASP 166 374 374 ASP ASP A . n A 1 167 ASN 167 375 375 ASN ASN A . n A 1 168 THR 168 376 376 THR THR A . n A 1 169 GLU 169 377 377 GLU GLU A . n A 1 170 ASN 170 378 378 ASN ASN A . n A 1 171 PRO 171 379 379 PRO PRO A . n A 1 172 THR 172 380 380 THR THR A . n A 1 173 GLU 173 381 381 GLU GLU A . n A 1 174 ARG 174 382 382 ARG ARG A . n A 1 175 SER 175 383 383 SER SER A . n A 1 176 SER 176 384 384 SER SER A . n A 1 177 PHE 177 385 385 PHE PHE A . n A 1 178 PHE 178 386 386 PHE PHE A . n A 1 179 CYS 179 387 387 CYS CYS A . n A 1 180 LEU 180 388 388 LEU LEU A . n A 1 181 GLU 181 389 389 GLU GLU A . n A 1 182 TYR 182 390 390 TYR TYR A . n A 1 183 PHE 183 391 391 PHE PHE A . n A 1 184 PRO 184 392 392 PRO PRO A . n A 1 185 SER 185 393 393 SER SER A . n A 1 186 LYS 186 394 394 LYS LYS A . n A 1 187 MET 187 395 395 MET MET A . n A 1 188 LEU 188 396 396 LEU LEU A . n A 1 189 ARG 189 397 397 ARG ARG A . n A 1 190 THR 190 398 398 THR THR A . n A 1 191 GLY 191 399 399 GLY GLY A . n A 1 192 ASN 192 400 400 ASN ASN A . n A 1 193 ASN 193 401 401 ASN ASN A . n A 1 194 PHE 194 402 402 PHE PHE A . n A 1 195 GLU 195 403 403 GLU GLU A . n A 1 196 PHE 196 404 404 PHE PHE A . n A 1 197 THR 197 405 405 THR THR A . n A 1 198 TYR 198 406 406 TYR TYR A . n A 1 199 ASN 199 407 407 ASN ASN A . n A 1 200 PHE 200 408 408 PHE PHE A . n A 1 201 GLU 201 409 409 GLU GLU A . n A 1 202 GLU 202 410 410 GLU GLU A . n A 1 203 VAL 203 411 411 VAL VAL A . n A 1 204 PRO 204 412 412 PRO PRO A . n A 1 205 PHE 205 413 413 PHE PHE A . n A 1 206 HIS 206 414 414 HIS HIS A . n A 1 207 SER 207 415 415 SER SER A . n A 1 208 SER 208 416 416 SER SER A . n A 1 209 PHE 209 417 417 PHE PHE A . n A 1 210 ALA 210 418 418 ALA ALA A . n A 1 211 PRO 211 419 419 PRO PRO A . n A 1 212 SER 212 420 420 SER SER A . n A 1 213 GLN 213 421 421 GLN GLN A . n A 1 214 ASN 214 422 422 ASN ASN A . n A 1 215 LEU 215 423 423 LEU LEU A . n A 1 216 PHE 216 424 424 PHE PHE A . n A 1 217 LYS 217 425 425 LYS LYS A . n A 1 218 LEU 218 426 426 LEU LEU A . n A 1 219 ALA 219 427 427 ALA ALA A . n A 1 220 ASN 220 428 428 ASN ASN A . n A 1 221 PRO 221 429 429 PRO PRO A . n A 1 222 LEU 222 430 430 LEU LEU A . n A 1 223 VAL 223 431 431 VAL VAL A . n A 1 224 ASP 224 432 432 ASP ASP A . n A 1 225 GLN 225 433 433 GLN GLN A . n A 1 226 TYR 226 434 434 TYR TYR A . n A 1 227 LEU 227 435 435 LEU LEU A . n A 1 228 TYR 228 436 436 TYR TYR A . n A 1 229 ARG 229 437 437 ARG ARG A . n A 1 230 PHE 230 438 438 PHE PHE A . n A 1 231 VAL 231 439 439 VAL VAL A . n A 1 232 SER 232 440 440 SER SER A . n A 1 233 THR 233 441 441 THR THR A . n A 1 234 ASN 234 442 442 ASN ASN A . n A 1 235 ASN 235 443 443 ASN ASN A . n A 1 236 THR 236 444 444 THR THR A . n A 1 237 GLY 237 445 445 GLY GLY A . n A 1 238 GLY 238 446 446 GLY GLY A . n A 1 239 VAL 239 447 447 VAL VAL A . n A 1 240 GLN 240 448 448 GLN GLN A . n A 1 241 PHE 241 449 449 PHE PHE A . n A 1 242 ASN 242 450 450 ASN ASN A . n A 1 243 LYS 243 451 451 LYS LYS A . n A 1 244 ASN 244 452 452 ASN ASN A . n A 1 245 LEU 245 453 453 LEU LEU A . n A 1 246 ALA 246 454 454 ALA ALA A . n A 1 247 GLY 247 455 455 GLY GLY A . n A 1 248 ARG 248 456 456 ARG ARG A . n A 1 249 TYR 249 457 457 TYR TYR A . n A 1 250 ALA 250 458 458 ALA ALA A . n A 1 251 ASN 251 459 459 ASN ASN A . n A 1 252 THR 252 460 460 THR THR A . n A 1 253 TYR 253 461 461 TYR TYR A . n A 1 254 LYS 254 462 462 LYS LYS A . n A 1 255 ASN 255 463 463 ASN ASN A . n A 1 256 TRP 256 464 464 TRP TRP A . n A 1 257 PHE 257 465 465 PHE PHE A . n A 1 258 PRO 258 466 466 PRO PRO A . n A 1 259 GLY 259 467 467 GLY GLY A . n A 1 260 PRO 260 468 468 PRO PRO A . n A 1 261 MET 261 469 469 MET MET A . n A 1 262 GLY 262 470 470 GLY GLY A . n A 1 263 ARG 263 471 471 ARG ARG A . n A 1 264 THR 264 472 472 THR THR A . n A 1 265 GLN 265 473 473 GLN GLN A . n A 1 266 GLY 266 474 474 GLY GLY A . n A 1 267 TRP 267 475 475 TRP TRP A . n A 1 268 ASN 268 476 476 ASN ASN A . n A 1 269 LEU 269 477 477 LEU LEU A . n A 1 270 GLY 270 478 478 GLY GLY A . n A 1 271 SER 271 479 479 SER SER A . n A 1 272 GLY 272 480 480 GLY GLY A . n A 1 273 VAL 273 481 481 VAL VAL A . n A 1 274 ASN 274 482 482 ASN ASN A . n A 1 275 ARG 275 483 483 ARG ARG A . n A 1 276 ALA 276 484 484 ALA ALA A . n A 1 277 SER 277 485 485 SER SER A . n A 1 278 VAL 278 486 486 VAL VAL A . n A 1 279 SER 279 487 487 SER SER A . n A 1 280 ALA 280 488 488 ALA ALA A . n A 1 281 PHE 281 489 489 PHE PHE A . n A 1 282 ALA 282 490 490 ALA ALA A . n A 1 283 THR 283 491 491 THR THR A . n A 1 284 THR 284 492 492 THR THR A . n A 1 285 ASN 285 493 493 ASN ASN A . n A 1 286 ARG 286 494 494 ARG ARG A . n A 1 287 MET 287 495 495 MET MET A . n A 1 288 GLU 288 496 496 GLU GLU A . n A 1 289 LEU 289 497 497 LEU LEU A . n A 1 290 GLU 290 498 498 GLU GLU A . n A 1 291 GLY 291 499 499 GLY GLY A . n A 1 292 ALA 292 500 500 ALA ALA A . n A 1 293 SER 293 501 501 SER SER A . n A 1 294 TYR 294 502 502 TYR TYR A . n A 1 295 GLN 295 503 503 GLN GLN A . n A 1 296 VAL 296 504 504 VAL VAL A . n A 1 297 PRO 297 505 505 PRO PRO A . n A 1 298 PRO 298 506 506 PRO PRO A . n A 1 299 GLN 299 507 507 GLN GLN A . n A 1 300 PRO 300 508 508 PRO PRO A . n A 1 301 ASN 301 509 509 ASN ASN A . n A 1 302 GLY 302 510 510 GLY GLY A . n A 1 303 MET 303 511 511 MET MET A . n A 1 304 THR 304 512 512 THR THR A . n A 1 305 ASN 305 513 513 ASN ASN A . n A 1 306 ASN 306 514 514 ASN ASN A . n A 1 307 LEU 307 515 515 LEU LEU A . n A 1 308 GLN 308 516 516 GLN GLN A . n A 1 309 GLY 309 517 517 GLY GLY A . n A 1 310 SER 310 518 518 SER SER A . n A 1 311 ASN 311 519 519 ASN ASN A . n A 1 312 THR 312 520 520 THR THR A . n A 1 313 TYR 313 521 521 TYR TYR A . n A 1 314 ALA 314 522 522 ALA ALA A . n A 1 315 LEU 315 523 523 LEU LEU A . n A 1 316 GLU 316 524 524 GLU GLU A . n A 1 317 ASN 317 525 525 ASN ASN A . n A 1 318 THR 318 526 526 THR THR A . n A 1 319 MET 319 527 527 MET MET A . n A 1 320 ILE 320 528 528 ILE ILE A . n A 1 321 PHE 321 529 529 PHE PHE A . n A 1 322 ASN 322 530 530 ASN ASN A . n A 1 323 SER 323 531 531 SER SER A . n A 1 324 GLN 324 532 532 GLN GLN A . n A 1 325 PRO 325 533 533 PRO PRO A . n A 1 326 ALA 326 534 534 ALA ALA A . n A 1 327 ASN 327 535 535 ASN ASN A . n A 1 328 PRO 328 536 536 PRO PRO A . n A 1 329 GLY 329 537 537 GLY GLY A . n A 1 330 THR 330 538 538 THR THR A . n A 1 331 THR 331 539 539 THR THR A . n A 1 332 ALA 332 540 540 ALA ALA A . n A 1 333 THR 333 541 541 THR THR A . n A 1 334 TYR 334 542 542 TYR TYR A . n A 1 335 LEU 335 543 543 LEU LEU A . n A 1 336 GLU 336 544 544 GLU GLU A . n A 1 337 GLY 337 545 545 GLY GLY A . n A 1 338 ASN 338 546 546 ASN ASN A . n A 1 339 MET 339 547 547 MET MET A . n A 1 340 LEU 340 548 548 LEU LEU A . n A 1 341 ILE 341 549 549 ILE ILE A . n A 1 342 THR 342 550 550 THR THR A . n A 1 343 SER 343 551 551 SER SER A . n A 1 344 GLU 344 552 552 GLU GLU A . n A 1 345 SER 345 553 553 SER SER A . n A 1 346 GLU 346 554 554 GLU GLU A . n A 1 347 THR 347 555 555 THR THR A . n A 1 348 GLN 348 556 556 GLN GLN A . n A 1 349 PRO 349 557 557 PRO PRO A . n A 1 350 VAL 350 558 558 VAL VAL A . n A 1 351 ASN 351 559 559 ASN ASN A . n A 1 352 ARG 352 560 560 ARG ARG A . n A 1 353 VAL 353 561 561 VAL VAL A . n A 1 354 ALA 354 562 562 ALA ALA A . n A 1 355 TYR 355 563 563 TYR TYR A . n A 1 356 ASN 356 564 564 ASN ASN A . n A 1 357 VAL 357 565 565 VAL VAL A . n A 1 358 GLY 358 566 566 GLY GLY A . n A 1 359 GLY 359 567 567 GLY GLY A . n A 1 360 GLN 360 568 568 GLN GLN A . n A 1 361 MET 361 569 569 MET MET A . n A 1 362 ALA 362 570 570 ALA ALA A . n A 1 363 THR 363 571 571 THR THR A . n A 1 364 ASN 364 572 572 ASN ASN A . n A 1 365 ASN 365 573 573 ASN ASN A . n A 1 366 GLN 366 574 574 GLN GLN A . n A 1 367 SER 367 575 575 SER SER A . n A 1 368 SER 368 576 576 SER SER A . n A 1 369 THR 369 577 577 THR THR A . n A 1 370 THR 370 578 578 THR THR A . n A 1 371 ALA 371 579 579 ALA ALA A . n A 1 372 PRO 372 580 580 PRO PRO A . n A 1 373 ALA 373 581 581 ALA ALA A . n A 1 374 THR 374 582 582 THR THR A . n A 1 375 GLY 375 583 583 GLY GLY A . n A 1 376 THR 376 584 584 THR THR A . n A 1 377 TYR 377 585 585 TYR TYR A . n A 1 378 ASN 378 586 586 ASN ASN A . n A 1 379 LEU 379 587 587 LEU LEU A . n A 1 380 GLN 380 588 588 GLN GLN A . n A 1 381 GLU 381 589 589 GLU GLU A . n A 1 382 ILE 382 590 590 ILE ILE A . n A 1 383 VAL 383 591 591 VAL VAL A . n A 1 384 PRO 384 592 592 PRO PRO A . n A 1 385 GLY 385 593 593 GLY GLY A . n A 1 386 SER 386 594 594 SER SER A . n A 1 387 VAL 387 595 595 VAL VAL A . n A 1 388 TRP 388 596 596 TRP TRP A . n A 1 389 MET 389 597 597 MET MET A . n A 1 390 GLU 390 598 598 GLU GLU A . n A 1 391 ARG 391 599 599 ARG ARG A . n A 1 392 ASP 392 600 600 ASP ASP A . n A 1 393 VAL 393 601 601 VAL VAL A . n A 1 394 TYR 394 602 602 TYR TYR A . n A 1 395 LEU 395 603 603 LEU LEU A . n A 1 396 GLN 396 604 604 GLN GLN A . n A 1 397 GLY 397 605 605 GLY GLY A . n A 1 398 PRO 398 606 606 PRO PRO A . n A 1 399 ILE 399 607 607 ILE ILE A . n A 1 400 TRP 400 608 608 TRP TRP A . n A 1 401 ALA 401 609 609 ALA ALA A . n A 1 402 LYS 402 610 610 LYS LYS A . n A 1 403 ILE 403 611 611 ILE ILE A . n A 1 404 PRO 404 612 612 PRO PRO A . n A 1 405 GLU 405 613 613 GLU GLU A . n A 1 406 THR 406 614 614 THR THR A . n A 1 407 GLY 407 615 615 GLY GLY A . n A 1 408 ALA 408 616 616 ALA ALA A . n A 1 409 HIS 409 617 617 HIS HIS A . n A 1 410 PHE 410 618 618 PHE PHE A . n A 1 411 HIS 411 619 619 HIS HIS A . n A 1 412 PRO 412 620 620 PRO PRO A . n A 1 413 SER 413 621 621 SER SER A . n A 1 414 PRO 414 622 622 PRO PRO A . n A 1 415 ALA 415 623 623 ALA ALA A . n A 1 416 MET 416 624 624 MET MET A . n A 1 417 GLY 417 625 625 GLY GLY A . n A 1 418 GLY 418 626 626 GLY GLY A . n A 1 419 PHE 419 627 627 PHE PHE A . n A 1 420 GLY 420 628 628 GLY GLY A . n A 1 421 LEU 421 629 629 LEU LEU A . n A 1 422 LYS 422 630 630 LYS LYS A . n A 1 423 HIS 423 631 631 HIS HIS A . n A 1 424 PRO 424 632 632 PRO PRO A . n A 1 425 PRO 425 633 633 PRO PRO A . n A 1 426 PRO 426 634 634 PRO PRO A . n A 1 427 MET 427 635 635 MET MET A . n A 1 428 MET 428 636 636 MET MET A . n A 1 429 LEU 429 637 637 LEU LEU A . n A 1 430 ILE 430 638 638 ILE ILE A . n A 1 431 LYS 431 639 639 LYS LYS A . n A 1 432 ASN 432 640 640 ASN ASN A . n A 1 433 THR 433 641 641 THR THR A . n A 1 434 PRO 434 642 642 PRO PRO A . n A 1 435 VAL 435 643 643 VAL VAL A . n A 1 436 PRO 436 644 644 PRO PRO A . n A 1 437 GLY 437 645 645 GLY GLY A . n A 1 438 ASN 438 646 646 ASN ASN A . n A 1 439 ILE 439 647 647 ILE ILE A . n A 1 440 THR 440 648 648 THR THR A . n A 1 441 SER 441 649 649 SER SER A . n A 1 442 PHE 442 650 650 PHE PHE A . n A 1 443 SER 443 651 651 SER SER A . n A 1 444 ASP 444 652 652 ASP ASP A . n A 1 445 VAL 445 653 653 VAL VAL A . n A 1 446 PRO 446 654 654 PRO PRO A . n A 1 447 VAL 447 655 655 VAL VAL A . n A 1 448 SER 448 656 656 SER SER A . n A 1 449 SER 449 657 657 SER SER A . n A 1 450 PHE 450 658 658 PHE PHE A . n A 1 451 ILE 451 659 659 ILE ILE A . n A 1 452 THR 452 660 660 THR THR A . n A 1 453 GLN 453 661 661 GLN GLN A . n A 1 454 TYR 454 662 662 TYR TYR A . n A 1 455 SER 455 663 663 SER SER A . n A 1 456 THR 456 664 664 THR THR A . n A 1 457 GLY 457 665 665 GLY GLY A . n A 1 458 GLN 458 666 666 GLN GLN A . n A 1 459 VAL 459 667 667 VAL VAL A . n A 1 460 THR 460 668 668 THR THR A . n A 1 461 VAL 461 669 669 VAL VAL A . n A 1 462 GLU 462 670 670 GLU GLU A . n A 1 463 MET 463 671 671 MET MET A . n A 1 464 GLU 464 672 672 GLU GLU A . n A 1 465 TRP 465 673 673 TRP TRP A . n A 1 466 GLU 466 674 674 GLU GLU A . n A 1 467 LEU 467 675 675 LEU LEU A . n A 1 468 LYS 468 676 676 LYS LYS A . n A 1 469 LYS 469 677 677 LYS LYS A . n A 1 470 GLU 470 678 678 GLU GLU A . n A 1 471 ASN 471 679 679 ASN ASN A . n A 1 472 SER 472 680 680 SER SER A . n A 1 473 LYS 473 681 681 LYS LYS A . n A 1 474 ARG 474 682 682 ARG ARG A . n A 1 475 TRP 475 683 683 TRP TRP A . n A 1 476 ASN 476 684 684 ASN ASN A . n A 1 477 PRO 477 685 685 PRO PRO A . n A 1 478 GLU 478 686 686 GLU GLU A . n A 1 479 ILE 479 687 687 ILE ILE A . n A 1 480 GLN 480 688 688 GLN GLN A . n A 1 481 TYR 481 689 689 TYR TYR A . n A 1 482 THR 482 690 690 THR THR A . n A 1 483 ASN 483 691 691 ASN ASN A . n A 1 484 ASN 484 692 692 ASN ASN A . n A 1 485 TYR 485 693 693 TYR TYR A . n A 1 486 ASN 486 694 694 ASN ASN A . n A 1 487 ASP 487 695 695 ASP ASP A . n A 1 488 PRO 488 696 696 PRO PRO A . n A 1 489 GLN 489 697 697 GLN GLN A . n A 1 490 PHE 490 698 698 PHE PHE A . n A 1 491 VAL 491 699 699 VAL VAL A . n A 1 492 ASP 492 700 700 ASP ASP A . n A 1 493 PHE 493 701 701 PHE PHE A . n A 1 494 ALA 494 702 702 ALA ALA A . n A 1 495 PRO 495 703 703 PRO PRO A . n A 1 496 ASP 496 704 704 ASP ASP A . n A 1 497 SER 497 705 705 SER SER A . n A 1 498 THR 498 706 706 THR THR A . n A 1 499 GLY 499 707 707 GLY GLY A . n A 1 500 GLU 500 708 708 GLU GLU A . n A 1 501 TYR 501 709 709 TYR TYR A . n A 1 502 ARG 502 710 710 ARG ARG A . n A 1 503 THR 503 711 711 THR THR A . n A 1 504 THR 504 712 712 THR THR A . n A 1 505 ARG 505 713 713 ARG ARG A . n A 1 506 PRO 506 714 714 PRO PRO A . n A 1 507 ILE 507 715 715 ILE ILE A . n A 1 508 GLY 508 716 716 GLY GLY A . n A 1 509 THR 509 717 717 THR THR A . n A 1 510 ARG 510 718 718 ARG ARG A . n A 1 511 TYR 511 719 719 TYR TYR A . n A 1 512 LEU 512 720 720 LEU LEU A . n A 1 513 THR 513 721 721 THR THR A . n A 1 514 ARG 514 722 722 ARG ARG A . n A 1 515 PRO 515 723 723 PRO PRO A . n A 1 516 LEU 516 724 724 LEU LEU A . n B 2 1 VAL 1 305 305 VAL VAL R . n B 2 2 ILE 2 306 306 ILE ILE R . n B 2 3 LYS 3 307 307 LYS LYS R . n B 2 4 GLU 4 308 308 GLU GLU R . n B 2 5 LEU 5 309 309 LEU LEU R . n B 2 6 VAL 6 310 310 VAL VAL R . n B 2 7 VAL 7 311 311 VAL VAL R . n B 2 8 SER 8 312 312 SER SER R . n B 2 9 ALA 9 313 313 ALA ALA R . n B 2 10 GLY 10 314 314 GLY GLY R . n B 2 11 GLU 11 315 315 GLU GLU R . n B 2 12 SER 12 316 316 SER SER R . n B 2 13 VAL 13 317 317 VAL VAL R . n B 2 14 GLN 14 318 318 GLN GLN R . n B 2 15 ILE 15 319 319 ILE ILE R . n B 2 16 THR 16 320 320 THR THR R . n B 2 17 LEU 17 321 321 LEU LEU R . n B 2 18 PRO 18 322 322 PRO PRO R . n B 2 19 LYS 19 323 323 LYS LYS R . n B 2 20 ASN 20 324 324 ASN ASN R . n B 2 21 GLU 21 325 325 GLU GLU R . n B 2 22 VAL 22 326 326 VAL VAL R . n B 2 23 GLN 23 327 327 GLN GLN R . n B 2 24 LEU 24 328 328 LEU LEU R . n B 2 25 ASN 25 329 329 ASN ASN R . n B 2 26 ALA 26 330 330 ALA ALA R . n B 2 27 TYR 27 331 331 TYR TYR R . n B 2 28 VAL 28 332 332 VAL VAL R . n B 2 29 LEU 29 333 333 LEU LEU R . n B 2 30 GLN 30 334 334 GLN GLN R . n B 2 31 GLU 31 335 335 GLU GLU R . n B 2 32 PRO 32 336 336 PRO PRO R . n B 2 33 PRO 33 337 337 PRO PRO R . n B 2 34 LYS 34 338 338 LYS LYS R . n B 2 35 GLY 35 339 339 GLY GLY R . n B 2 36 GLU 36 340 340 GLU GLU R . n B 2 37 THR 37 341 341 THR THR R . n B 2 38 TYR 38 342 342 TYR TYR R . n B 2 39 THR 39 343 343 THR THR R . n B 2 40 TYR 40 344 344 TYR TYR R . n B 2 41 ASP 41 345 345 ASP ASP R . n B 2 42 TRP 42 346 346 TRP TRP R . n B 2 43 GLN 43 347 347 GLN GLN R . n B 2 44 LEU 44 348 348 LEU LEU R . n B 2 45 ILE 45 349 349 ILE ILE R . n B 2 46 THR 46 350 350 THR THR R . n B 2 47 HIS 47 351 351 HIS HIS R . n B 2 48 PRO 48 352 352 PRO PRO R . n B 2 49 ARG 49 353 353 ARG ARG R . n B 2 50 ASP 50 354 354 ASP ASP R . n B 2 51 TYR 51 355 355 TYR TYR R . n B 2 52 SER 52 356 356 SER SER R . n B 2 53 GLY 53 357 357 GLY GLY R . n B 2 54 GLU 54 358 358 GLU GLU R . n B 2 55 MET 55 359 359 MET MET R . n B 2 56 GLU 56 360 360 GLU GLU R . n B 2 57 GLY 57 361 361 GLY GLY R . n B 2 58 LYS 58 362 362 LYS LYS R . n B 2 59 HIS 59 363 363 HIS HIS R . n B 2 60 SER 60 364 364 SER SER R . n B 2 61 GLN 61 365 365 GLN GLN R . n B 2 62 ILE 62 366 366 ILE ILE R . n B 2 63 LEU 63 367 367 LEU LEU R . n B 2 64 LYS 64 368 368 LYS LYS R . n B 2 65 LEU 65 369 369 LEU LEU R . n B 2 66 SER 66 370 370 SER SER R . n B 2 67 LYS 67 371 371 LYS LYS R . n B 2 68 LEU 68 372 372 LEU LEU R . n B 2 69 THR 69 373 373 THR THR R . n B 2 70 PRO 70 374 374 PRO PRO R . n B 2 71 GLY 71 375 375 GLY GLY R . n B 2 72 LEU 72 376 376 LEU LEU R . n B 2 73 TYR 73 377 377 TYR TYR R . n B 2 74 GLU 74 378 378 GLU GLU R . n B 2 75 PHE 75 379 379 PHE PHE R . n B 2 76 LYS 76 380 380 LYS LYS R . n B 2 77 VAL 77 381 381 VAL VAL R . n B 2 78 ILE 78 382 382 ILE ILE R . n B 2 79 VAL 79 383 383 VAL VAL R . n B 2 80 GLU 80 384 384 GLU GLU R . n B 2 81 GLY 81 385 385 GLY GLY R . n B 2 82 GLN 82 386 386 GLN GLN R . n B 2 83 ASN 83 387 387 ASN ASN R . n B 2 84 ALA 84 388 388 ALA ALA R . n B 2 85 HIS 85 389 389 HIS HIS R . n B 2 86 GLY 86 390 390 GLY GLY R . n B 2 87 GLU 87 391 391 GLU GLU R . n B 2 88 GLY 88 392 392 GLY GLY R . n B 2 89 TYR 89 393 393 TYR TYR R . n B 2 90 VAL 90 394 394 VAL VAL R . n B 2 91 ASN 91 395 395 ASN ASN R . n B 2 92 VAL 92 396 396 VAL VAL R . n B 2 93 THR 93 397 397 THR THR R . n B 2 94 VAL 94 398 398 VAL VAL R . n B 2 95 LYS 95 399 399 LYS LYS R . n B 2 96 PRO 96 400 400 PRO PRO R . n B 2 97 GLU 97 401 401 GLU GLU R . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.11.1_2575: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6JCS _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JCS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JCS _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JCS _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.010 ? 5026 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 1.008 ? 6863 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 6.136 ? 2942 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.061 ? 722 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 909 ? f_plane_restr ? ? # _struct.entry_id 6JCS _struct.title 'AAV5 in complex with AAVR' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JCS _struct_keywords.text 'adeno-associated virus, AAV5, receptor, AAVR, VIRUS' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q9YIJ1_9VIRU Q9YIJ1 ? 1 ;DGVGNASGDWHCDSTWMGDRVVTKSTRTWVLPSYNNHQYREIKSGSVDGSNANAYFGYSTPWGYFDFNRFHSHWSPRDWQ RLINNYWGFRPRSLRVKIFNIQVKEVTVQDSTTTIANNLTSTVQVFTDDDYQLPYVVGNGTEGCLPAFPPQVFTLPQYGY ATLNRDNTENPTERSSFFCLEYFPSKMLRTGNNFEFTYNFEEVPFHSSFAPSQNLFKLANPLVDQYLYRFVSTNNTGGVQ FNKNLAGRYANTYKNWFPGPMGRTQGWNLGSGVNRASVSAFATTNRMELEGASYQVPPQPNGMTNNLQGSNTYALENTMI FNSQPANPGTTATYLEGNMLITSESETQPVNRVAYNVGGQMATNNQSSTTAPATGTYNLQEIVPGSVWMERDVYLQGPIW AKIPETGAHFHPSPAMGGFGLKHPPPMMLIKNTPVPGNITSFSDVPVSSFITQYSTGQVTVEMEWELKKENSKRWNPEIQ YTNNYNDPQFVDFAPDSTGEYRTTRPIGTRYLTRPL ; 209 2 UNP K319L_HUMAN Q8IZA0 ? 2 ;VIKELVVSAGESVQITLPKNEVQLNAYVLQEPPKGETYTYDWQLITHPRDYSGEMEGKHSQILKLSKLTPGLYEFKVIVE GQNAHGEGYVNVTVKPE ; 305 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6JCS A 1 ? 516 ? Q9YIJ1 209 ? 724 ? 209 724 2 2 6JCS R 1 ? 97 ? Q8IZA0 305 ? 401 ? 305 401 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 120-meric 120 2 'icosahedral asymmetric unit' ? dimeric 2 3 'icosahedral pentamer' ? decameric 10 4 'icosahedral 23 hexamer' ? dodecameric 12 5 'icosahedral asymmetric unit, std point frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 0.00000 0.80901699 0.50000000 0.30901699 0.00000 -0.50000000 0.30901699 0.80901699 0.00000 3 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 4 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 0.80901699 0.50000000 0.00000 5 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 0.50000000 0.30901699 0.80901699 0.00000 6 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 7 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 0.80901699 0.00000 8 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 9 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901699 0.50000000 0.00000 10 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 0.50000000 0.30901699 0.80901699 0.00000 11 'point symmetry operation' ? ? -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 12 'point symmetry operation' ? ? -0.30901699 0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 -0.80901699 0.00000 13 'point symmetry operation' ? ? 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 0.00000 14 'point symmetry operation' ? ? 0.80901699 -0.50000000 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 -0.80901699 -0.50000000 0.00000 15 'point symmetry operation' ? ? -0.30901699 -0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 -0.50000000 -0.30901699 -0.80901699 0.00000 16 'point symmetry operation' ? ? 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 17 'point symmetry operation' ? ? 0.30901699 -0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 -0.80901699 0.00000 18 'point symmetry operation' ? ? -0.80901699 -0.50000000 0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 0.00000 19 'point symmetry operation' ? ? -0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 -0.30901699 -0.80901699 -0.50000000 0.00000 20 'point symmetry operation' ? ? 0.30901699 0.80901699 -0.50000000 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000000 -0.30901699 -0.80901699 0.00000 21 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 22 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 0.80901699 0.50000000 0.30901699 0.00000 23 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 24 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 25 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 0.00000 0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 26 'point symmetry operation' ? ? 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 27 'point symmetry operation' ? ? -0.50000000 0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 -0.30901699 0.00000 28 'point symmetry operation' ? ? -0.30901699 0.80901699 0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 0.00000 29 'point symmetry operation' ? ? 0.30901699 0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 0.30901699 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 30 'point symmetry operation' ? ? 0.50000000 0.30901699 0.80901699 0.00000 -0.30901699 -0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 31 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 32 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 0.30901699 0.00000 33 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 0.80901699 0.00000 34 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 0.00000 0.80901699 -0.50000000 0.30901699 0.00000 -0.50000000 -0.30901699 0.80901699 0.00000 35 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 0.00000 -0.30901699 -0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 0.30901699 0.00000 36 'point symmetry operation' ? ? 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 -1.00000000 0.00000000 0.00000 37 'point symmetry operation' ? ? 0.50000000 -0.30901699 -0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 -0.30901699 0.00000 38 'point symmetry operation' ? ? 0.30901699 -0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 0.00000 -0.50000000 0.30901699 -0.80901699 0.00000 39 'point symmetry operation' ? ? -0.30901699 -0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 -0.30901699 0.00000 0.50000000 0.30901699 -0.80901699 0.00000 40 'point symmetry operation' ? ? -0.50000000 -0.30901699 -0.80901699 0.00000 0.30901699 0.80901699 -0.50000000 0.00000 0.80901699 -0.50000000 -0.30901699 0.00000 41 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 42 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 0.00000 -0.50000000 0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 43 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 0.00000 44 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 0.80901699 0.50000000 0.00000 -0.80901699 0.50000000 -0.30901699 0.00000 45 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 0.00000 0.50000000 0.30901699 0.80901699 0.00000 0.30901699 0.80901699 -0.50000000 0.00000 46 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 47 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000000 0.30901699 0.80901699 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 48 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 0.00000 -0.30901699 0.80901699 0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 49 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 0.80901699 0.50000000 0.00000 0.80901699 -0.50000000 0.30901699 0.00000 50 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 0.00000 0.50000000 0.30901699 0.80901699 0.00000 -0.30901699 -0.80901699 0.50000000 0.00000 51 'point symmetry operation' ? ? 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 -1.00000000 0.00000000 0.00000000 0.00000 52 'point symmetry operation' ? ? 0.80901699 0.50000000 0.30901699 0.00000 0.50000000 -0.30901699 -0.80901699 0.00000 -0.30901699 0.80901699 -0.50000000 0.00000 53 'point symmetry operation' ? ? 0.50000000 -0.30901699 0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 0.00000 0.80901699 0.50000000 -0.30901699 0.00000 54 'point symmetry operation' ? ? -0.50000000 -0.30901699 0.80901699 0.00000 -0.30901699 -0.80901699 -0.50000000 0.00000 0.80901699 -0.50000000 0.30901699 0.00000 55 'point symmetry operation' ? ? -0.80901699 0.50000000 0.30901699 0.00000 -0.50000000 -0.30901699 -0.80901699 0.00000 -0.30901699 -0.80901699 0.50000000 0.00000 56 'point symmetry operation' ? ? 0.00000000 -1.00000000 0.00000000 0.00000 0.00000000 0.00000000 -1.00000000 0.00000 1.00000000 0.00000000 0.00000000 0.00000 57 'point symmetry operation' ? ? -0.80901699 -0.50000000 -0.30901699 0.00000 0.50000000 -0.30901699 -0.80901699 0.00000 0.30901699 -0.80901699 0.50000000 0.00000 58 'point symmetry operation' ? ? -0.50000000 0.30901699 -0.80901699 0.00000 0.30901699 -0.80901699 -0.50000000 0.00000 -0.80901699 -0.50000000 0.30901699 0.00000 59 'point symmetry operation' ? ? 0.50000000 0.30901699 -0.80901699 0.00000 -0.30901699 -0.80901699 -0.50000000 0.00000 -0.80901699 0.50000000 -0.30901699 0.00000 60 'point symmetry operation' ? ? 0.80901699 -0.50000000 -0.30901699 0.00000 -0.50000000 -0.30901699 -0.80901699 0.00000 0.30901699 0.80901699 -0.50000000 0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 33 ? HIS A 37 ? SER A 241 HIS A 245 5 ? 5 HELX_P HELX_P2 AA2 SER A 50 ? ALA A 54 ? SER A 258 ALA A 262 5 ? 5 HELX_P HELX_P3 AA3 ARG A 69 ? HIS A 73 ? ARG A 277 HIS A 281 5 ? 5 HELX_P HELX_P4 AA4 SER A 75 ? ASN A 84 ? SER A 283 ASN A 292 1 ? 10 HELX_P HELX_P5 AA5 CYS A 179 ? PHE A 183 ? CYS A 387 PHE A 391 5 ? 5 HELX_P HELX_P6 AA6 GLU A 344 ? GLN A 348 ? GLU A 552 GLN A 556 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 297 A . ? PRO 505 A PRO 298 A ? PRO 506 A 1 -9.19 2 GLY 10 B . ? GLY 314 R GLU 11 B ? GLU 315 R 1 9.98 3 LEU 17 B . ? LEU 321 R PRO 18 B ? PRO 322 R 1 4.03 4 LEU 29 B . ? LEU 333 R GLN 30 B ? GLN 334 R 1 0.77 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 5 ? AA3 ? 3 ? AA4 ? 5 ? AA5 ? 2 ? AA6 ? 2 ? AA7 ? 2 ? AA8 ? 2 ? AA9 ? 2 ? AB1 ? 2 ? AB2 ? 2 ? AB3 ? 2 ? AB4 ? 2 ? AB5 ? 2 ? AB6 ? 2 ? AB7 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA5 1 2 ? parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel AA9 1 2 ? anti-parallel AB1 1 2 ? parallel AB2 1 2 ? anti-parallel AB3 1 2 ? anti-parallel AB4 1 2 ? parallel AB5 1 2 ? anti-parallel AB6 1 2 ? anti-parallel AB7 1 2 ? anti-parallel AB7 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 13 ? TRP A 16 ? ASP A 221 TRP A 224 AA1 2 ARG A 20 ? LEU A 31 ? ARG A 228 LEU A 239 AA1 3 SER A 455 ? LYS A 469 ? SER A 663 LYS A 677 AA1 4 TYR A 86 ? GLN A 109 ? TYR A 294 GLN A 317 AA1 5 VAL A 152 ? THR A 154 ? VAL A 360 THR A 362 AA2 1 THR A 112 ? ASN A 117 ? THR A 320 ASN A 325 AA2 2 TYR A 86 ? GLN A 109 ? TYR A 294 GLN A 317 AA2 3 SER A 455 ? LYS A 469 ? SER A 663 LYS A 677 AA2 4 ARG A 20 ? LEU A 31 ? ARG A 228 LEU A 239 AA2 5 PHE A 194 ? ASN A 199 ? PHE A 402 ASN A 407 AA3 1 ARG A 40 ? SER A 44 ? ARG A 248 SER A 252 AA3 2 TYR A 55 ? TYR A 64 ? TYR A 263 TYR A 272 AA3 3 GLN A 157 ? THR A 162 ? GLN A 365 THR A 370 AA4 1 ARG A 40 ? SER A 44 ? ARG A 248 SER A 252 AA4 2 TYR A 55 ? TYR A 64 ? TYR A 263 TYR A 272 AA4 3 MET A 427 ? ASN A 432 ? MET A 635 ASN A 640 AA4 4 VAL A 123 ? ASP A 128 ? VAL A 331 ASP A 336 AA4 5 LYS A 186 ? LEU A 188 ? LYS A 394 LEU A 396 AA5 1 PHE A 209 ? PRO A 211 ? PHE A 417 PRO A 419 AA5 2 LEU A 512 ? ARG A 514 ? LEU A 720 ARG A 722 AA6 1 TYR A 228 ? THR A 233 ? TYR A 436 THR A 441 AA6 2 VAL A 239 ? LYS A 243 ? VAL A 447 LYS A 451 AA7 1 MET A 261 ? GLY A 262 ? MET A 469 GLY A 470 AA7 2 LEU A 379 ? GLN A 380 ? LEU A 587 GLN A 588 AA8 1 TRP A 267 ? ASN A 268 ? TRP A 475 ASN A 476 AA8 2 THR A 312 ? TYR A 313 ? THR A 520 TYR A 521 AA9 1 ARG A 286 ? GLU A 288 ? ARG A 494 GLU A 496 AA9 2 SER A 293 ? GLN A 295 ? SER A 501 GLN A 503 AB1 1 MET A 303 ? THR A 304 ? MET A 511 THR A 512 AB1 2 ARG A 352 ? VAL A 353 ? ARG A 560 VAL A 561 AB2 1 MET A 319 ? ASN A 322 ? MET A 527 ASN A 530 AB2 2 MET A 339 ? THR A 342 ? MET A 547 THR A 550 AB3 1 GLY A 359 ? ALA A 362 ? GLY A 567 ALA A 570 AB3 2 THR A 374 ? TYR A 377 ? THR A 582 TYR A 585 AB4 1 TRP A 400 ? LYS A 402 ? TRP A 608 LYS A 610 AB4 2 PHE A 419 ? LEU A 421 ? PHE A 627 LEU A 629 AB5 1 ALA A 494 ? PRO A 495 ? ALA A 702 PRO A 703 AB5 2 TYR A 501 ? ARG A 502 ? TYR A 709 ARG A 710 AB6 1 VAL B 6 ? VAL B 7 ? VAL R 310 VAL R 311 AB6 2 VAL B 28 ? LEU B 29 ? VAL R 332 LEU R 333 AB7 1 TRP B 42 ? THR B 46 ? TRP R 346 THR R 350 AB7 2 GLY B 71 ? GLU B 80 ? GLY R 375 GLU R 384 AB7 3 HIS B 85 ? VAL B 94 ? HIS R 389 VAL R 398 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 15 ? N THR A 223 O VAL A 22 ? O VAL A 230 AA1 2 3 N LEU A 31 ? N LEU A 239 O SER A 455 ? O SER A 663 AA1 3 4 O GLU A 464 ? O GLU A 672 N ARG A 92 ? N ARG A 300 AA2 1 2 O ALA A 116 ? O ALA A 324 N GLU A 105 ? N GLU A 313 AA2 2 3 N ARG A 92 ? N ARG A 300 O GLU A 464 ? O GLU A 672 AA2 3 4 O SER A 455 ? O SER A 663 N LEU A 31 ? N LEU A 239 AA3 1 2 N SER A 44 ? N SER A 252 O TYR A 55 ? O TYR A 263 AA3 2 3 N TRP A 62 ? N TRP A 270 O TYR A 158 ? O TYR A 366 AA4 1 2 N SER A 44 ? N SER A 252 O TYR A 55 ? O TYR A 263 AA4 2 3 N GLY A 63 ? N GLY A 271 O ILE A 430 ? O ILE A 638 AA4 3 4 O LYS A 431 ? O LYS A 639 N GLN A 124 ? N GLN A 332 AA4 4 5 N VAL A 123 ? N VAL A 331 O LEU A 188 ? O LEU A 396 AA5 1 2 N ALA A 210 ? N ALA A 418 O LEU A 512 ? O LEU A 720 AA6 1 2 N ARG A 229 ? N ARG A 437 O ASN A 242 ? O ASN A 450 AA7 1 2 N MET A 261 ? N MET A 469 O GLN A 380 ? O GLN A 588 AA8 1 2 N TRP A 267 ? N TRP A 475 O TYR A 313 ? O TYR A 521 AA9 1 2 N MET A 287 ? N MET A 495 O TYR A 294 ? O TYR A 502 AB1 1 2 N THR A 304 ? N THR A 512 O ARG A 352 ? O ARG A 560 AB2 1 2 N PHE A 321 ? N PHE A 529 O LEU A 340 ? O LEU A 548 AB3 1 2 N MET A 361 ? N MET A 569 O GLY A 375 ? O GLY A 583 AB4 1 2 N ALA A 401 ? N ALA A 609 O LEU A 421 ? O LEU A 629 AB5 1 2 N ALA A 494 ? N ALA A 702 O ARG A 502 ? O ARG A 710 AB6 1 2 N VAL B 6 ? N VAL R 310 O LEU B 29 ? O LEU R 333 AB7 1 2 N GLN B 43 ? N GLN R 347 O LYS B 76 ? O LYS R 380 AB7 2 3 N TYR B 73 ? N TYR R 377 O VAL B 92 ? O VAL R 396 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 353 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 353 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 353 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.80 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 14.50 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 227 ? ? -93.47 51.00 2 1 SER A 233 ? ? -160.26 112.38 3 1 PHE A 275 ? ? -96.27 34.40 4 1 ASN A 276 ? ? -94.83 51.49 5 1 GLU A 350 ? ? -79.35 -165.99 6 1 ASN A 459 ? ? -143.06 20.16 7 1 ASN A 514 ? ? 59.46 82.65 8 1 LEU A 515 ? ? -51.32 -75.82 9 1 GLN A 516 ? ? -167.09 114.37 10 1 HIS A 619 ? ? -37.82 118.10 11 1 ASP A 695 ? ? 52.93 75.38 12 1 ASP A 704 ? ? -124.74 -167.49 13 1 THR A 717 ? ? -130.91 -30.45 14 1 GLU R 315 ? ? 58.41 75.58 15 1 SER R 316 ? ? 63.01 76.03 16 1 VAL R 317 ? ? -30.00 123.83 17 1 GLU R 358 ? ? -140.40 43.37 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 PHE A 618 ? ? HIS A 619 ? ? -148.38 2 1 SER R 316 ? ? VAL R 317 ? ? 74.59 # _pdbx_point_symmetry.entry_id 6JCS _pdbx_point_symmetry.Schoenflies_symbol I # _em_3d_fitting.entry_id 6JCS _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6JCS _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 12590 _em_3d_reconstruction.resolution 3.18 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'Adeno-associated virus - 5' 'MULTIPLE SOURCES' COMPLEX '1, 2' ? ? 2 1 ? 'capsid protein VP1' NATURAL COMPLEX 1 ? ? 3 1 ? PKD1 RECOMBINANT 'ORGANELLE OR CELLULAR COMPONENT' 2 ? ? # _em_imaging.id 1 _em_imaging.entry_id 6JCS _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI ARCTICA' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_virus_entity.entity_assembly_id 2 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6JCS _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6JCS _em_experiment.id 1 _em_experiment.aggregation_state '2D ARRAY' _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 1 2 ? ? 82300 ? ? 'Adeno-associated virus - 5' ? ? 2 3 ? ? 9606 ? ? 'Homo sapiens' ? ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 3 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 36 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON II (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 2 _em_virus_natural_host.ncbi_tax_id 9606 _em_virus_natural_host.organism 'Homo sapiens' _em_virus_natural_host.strain ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 6JCS _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_