HEADER VIRUS 30-JAN-19 6JCS TITLE AAV5 IN COMPLEX WITH AAVR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: DYSLEXIA-ASSOCIATED PROTEIN KIAA0319-LIKE PROTEIN; COMPND 6 CHAIN: R; COMPND 7 FRAGMENT: PKD1; COMPND 8 SYNONYM: ADENO-ASSOCIATED VIRUS RECEPTOR,AAVR; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ADENO-ASSOCIATED VIRUS - 5; SOURCE 3 ORGANISM_TAXID: 82300; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN; SOURCE 7 ORGANISM_TAXID: 9606; SOURCE 8 GENE: KIAA0319L, AAVR, KIAA1837, PP791; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENO-ASSOCIATED VIRUS, AAV5, RECEPTOR, AAVR, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR Z.LOU,R.ZHANG REVDAT 4 27-MAR-24 6JCS 1 REMARK REVDAT 3 06-NOV-19 6JCS 1 CRYST1 REVDAT 2 02-OCT-19 6JCS 1 JRNL REVDAT 1 14-AUG-19 6JCS 0 JRNL AUTH R.ZHANG,G.XU,L.CAO,Z.SUN,Y.HE,M.CUI,Y.SUN,S.LI,H.LI,L.QIN, JRNL AUTH 2 M.HU,Z.YUAN,Z.RAO,W.DING,Z.RAO,Z.LOU JRNL TITL DIVERGENT ENGAGEMENTS BETWEEN ADENO-ASSOCIATED VIRUSES WITH JRNL TITL 2 THEIR CELLULAR RECEPTOR AAVR. JRNL REF NAT COMMUN V. 10 3760 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31434885 JRNL DOI 10.1038/S41467-019-11668-X REMARK 2 REMARK 2 RESOLUTION. 3.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.180 REMARK 3 NUMBER OF PARTICLES : 12590 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6JCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010880. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : 2D ARRAY REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ADENO-ASSOCIATED VIRUS - 5; REMARK 245 CAPSID PROTEIN VP1; PKD1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3600.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 353 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 227 51.00 -93.47 REMARK 500 SER A 233 112.38 -160.26 REMARK 500 PHE A 275 34.40 -96.27 REMARK 500 ASN A 276 51.49 -94.83 REMARK 500 GLU A 350 -165.99 -79.35 REMARK 500 ASN A 459 20.16 -143.06 REMARK 500 ASN A 514 82.65 59.46 REMARK 500 LEU A 515 -75.82 -51.32 REMARK 500 GLN A 516 114.37 -167.09 REMARK 500 HIS A 619 118.10 -37.82 REMARK 500 ASP A 695 75.38 52.93 REMARK 500 ASP A 704 -167.49 -124.74 REMARK 500 THR A 717 -30.45 -130.91 REMARK 500 GLU R 315 75.58 58.41 REMARK 500 SER R 316 76.03 63.01 REMARK 500 VAL R 317 123.83 -30.00 REMARK 500 GLU R 358 43.37 -140.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 618 HIS A 619 -148.38 REMARK 500 SER R 316 VAL R 317 74.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9796 RELATED DB: EMDB REMARK 900 AAV5 IN COMPLEX A LIGAND DBREF 6JCS A 209 724 UNP Q9YIJ1 Q9YIJ1_9VIRU 209 724 DBREF 6JCS R 305 401 UNP Q8IZA0 K319L_HUMAN 305 401 SEQRES 1 A 516 ASP GLY VAL GLY ASN ALA SER GLY ASP TRP HIS CYS ASP SEQRES 2 A 516 SER THR TRP MET GLY ASP ARG VAL VAL THR LYS SER THR SEQRES 3 A 516 ARG THR TRP VAL LEU PRO SER TYR ASN ASN HIS GLN TYR SEQRES 4 A 516 ARG GLU ILE LYS SER GLY SER VAL ASP GLY SER ASN ALA SEQRES 5 A 516 ASN ALA TYR PHE GLY TYR SER THR PRO TRP GLY TYR PHE SEQRES 6 A 516 ASP PHE ASN ARG PHE HIS SER HIS TRP SER PRO ARG ASP SEQRES 7 A 516 TRP GLN ARG LEU ILE ASN ASN TYR TRP GLY PHE ARG PRO SEQRES 8 A 516 ARG SER LEU ARG VAL LYS ILE PHE ASN ILE GLN VAL LYS SEQRES 9 A 516 GLU VAL THR VAL GLN ASP SER THR THR THR ILE ALA ASN SEQRES 10 A 516 ASN LEU THR SER THR VAL GLN VAL PHE THR ASP ASP ASP SEQRES 11 A 516 TYR GLN LEU PRO TYR VAL VAL GLY ASN GLY THR GLU GLY SEQRES 12 A 516 CYS LEU PRO ALA PHE PRO PRO GLN VAL PHE THR LEU PRO SEQRES 13 A 516 GLN TYR GLY TYR ALA THR LEU ASN ARG ASP ASN THR GLU SEQRES 14 A 516 ASN PRO THR GLU ARG SER SER PHE PHE CYS LEU GLU TYR SEQRES 15 A 516 PHE PRO SER LYS MET LEU ARG THR GLY ASN ASN PHE GLU SEQRES 16 A 516 PHE THR TYR ASN PHE GLU GLU VAL PRO PHE HIS SER SER SEQRES 17 A 516 PHE ALA PRO SER GLN ASN LEU PHE LYS LEU ALA ASN PRO SEQRES 18 A 516 LEU VAL ASP GLN TYR LEU TYR ARG PHE VAL SER THR ASN SEQRES 19 A 516 ASN THR GLY GLY VAL GLN PHE ASN LYS ASN LEU ALA GLY SEQRES 20 A 516 ARG TYR ALA ASN THR TYR LYS ASN TRP PHE PRO GLY PRO SEQRES 21 A 516 MET GLY ARG THR GLN GLY TRP ASN LEU GLY SER GLY VAL SEQRES 22 A 516 ASN ARG ALA SER VAL SER ALA PHE ALA THR THR ASN ARG SEQRES 23 A 516 MET GLU LEU GLU GLY ALA SER TYR GLN VAL PRO PRO GLN SEQRES 24 A 516 PRO ASN GLY MET THR ASN ASN LEU GLN GLY SER ASN THR SEQRES 25 A 516 TYR ALA LEU GLU ASN THR MET ILE PHE ASN SER GLN PRO SEQRES 26 A 516 ALA ASN PRO GLY THR THR ALA THR TYR LEU GLU GLY ASN SEQRES 27 A 516 MET LEU ILE THR SER GLU SER GLU THR GLN PRO VAL ASN SEQRES 28 A 516 ARG VAL ALA TYR ASN VAL GLY GLY GLN MET ALA THR ASN SEQRES 29 A 516 ASN GLN SER SER THR THR ALA PRO ALA THR GLY THR TYR SEQRES 30 A 516 ASN LEU GLN GLU ILE VAL PRO GLY SER VAL TRP MET GLU SEQRES 31 A 516 ARG ASP VAL TYR LEU GLN GLY PRO ILE TRP ALA LYS ILE SEQRES 32 A 516 PRO GLU THR GLY ALA HIS PHE HIS PRO SER PRO ALA MET SEQRES 33 A 516 GLY GLY PHE GLY LEU LYS HIS PRO PRO PRO MET MET LEU SEQRES 34 A 516 ILE LYS ASN THR PRO VAL PRO GLY ASN ILE THR SER PHE SEQRES 35 A 516 SER ASP VAL PRO VAL SER SER PHE ILE THR GLN TYR SER SEQRES 36 A 516 THR GLY GLN VAL THR VAL GLU MET GLU TRP GLU LEU LYS SEQRES 37 A 516 LYS GLU ASN SER LYS ARG TRP ASN PRO GLU ILE GLN TYR SEQRES 38 A 516 THR ASN ASN TYR ASN ASP PRO GLN PHE VAL ASP PHE ALA SEQRES 39 A 516 PRO ASP SER THR GLY GLU TYR ARG THR THR ARG PRO ILE SEQRES 40 A 516 GLY THR ARG TYR LEU THR ARG PRO LEU SEQRES 1 R 97 VAL ILE LYS GLU LEU VAL VAL SER ALA GLY GLU SER VAL SEQRES 2 R 97 GLN ILE THR LEU PRO LYS ASN GLU VAL GLN LEU ASN ALA SEQRES 3 R 97 TYR VAL LEU GLN GLU PRO PRO LYS GLY GLU THR TYR THR SEQRES 4 R 97 TYR ASP TRP GLN LEU ILE THR HIS PRO ARG ASP TYR SER SEQRES 5 R 97 GLY GLU MET GLU GLY LYS HIS SER GLN ILE LEU LYS LEU SEQRES 6 R 97 SER LYS LEU THR PRO GLY LEU TYR GLU PHE LYS VAL ILE SEQRES 7 R 97 VAL GLU GLY GLN ASN ALA HIS GLY GLU GLY TYR VAL ASN SEQRES 8 R 97 VAL THR VAL LYS PRO GLU HELIX 1 AA1 SER A 241 HIS A 245 5 5 HELIX 2 AA2 SER A 258 ALA A 262 5 5 HELIX 3 AA3 ARG A 277 HIS A 281 5 5 HELIX 4 AA4 SER A 283 ASN A 292 1 10 HELIX 5 AA5 CYS A 387 PHE A 391 5 5 HELIX 6 AA6 GLU A 552 GLN A 556 5 5 SHEET 1 AA1 5 ASP A 221 TRP A 224 0 SHEET 2 AA1 5 ARG A 228 LEU A 239 -1 O VAL A 230 N THR A 223 SHEET 3 AA1 5 SER A 663 LYS A 677 -1 O SER A 663 N LEU A 239 SHEET 4 AA1 5 TYR A 294 GLN A 317 -1 N ARG A 300 O GLU A 672 SHEET 5 AA1 5 VAL A 360 THR A 362 0 SHEET 1 AA2 5 THR A 320 ASN A 325 0 SHEET 2 AA2 5 TYR A 294 GLN A 317 -1 N GLU A 313 O ALA A 324 SHEET 3 AA2 5 SER A 663 LYS A 677 -1 O GLU A 672 N ARG A 300 SHEET 4 AA2 5 ARG A 228 LEU A 239 -1 N LEU A 239 O SER A 663 SHEET 5 AA2 5 PHE A 402 ASN A 407 0 SHEET 1 AA3 3 ARG A 248 SER A 252 0 SHEET 2 AA3 3 TYR A 263 TYR A 272 -1 O TYR A 263 N SER A 252 SHEET 3 AA3 3 GLN A 365 THR A 370 -1 O TYR A 366 N TRP A 270 SHEET 1 AA4 5 ARG A 248 SER A 252 0 SHEET 2 AA4 5 TYR A 263 TYR A 272 -1 O TYR A 263 N SER A 252 SHEET 3 AA4 5 MET A 635 ASN A 640 -1 O ILE A 638 N GLY A 271 SHEET 4 AA4 5 VAL A 331 ASP A 336 -1 N GLN A 332 O LYS A 639 SHEET 5 AA4 5 LYS A 394 LEU A 396 -1 O LEU A 396 N VAL A 331 SHEET 1 AA5 2 PHE A 417 PRO A 419 0 SHEET 2 AA5 2 LEU A 720 ARG A 722 1 O LEU A 720 N ALA A 418 SHEET 1 AA6 2 TYR A 436 THR A 441 0 SHEET 2 AA6 2 VAL A 447 LYS A 451 -1 O ASN A 450 N ARG A 437 SHEET 1 AA7 2 MET A 469 GLY A 470 0 SHEET 2 AA7 2 LEU A 587 GLN A 588 -1 O GLN A 588 N MET A 469 SHEET 1 AA8 2 TRP A 475 ASN A 476 0 SHEET 2 AA8 2 THR A 520 TYR A 521 -1 O TYR A 521 N TRP A 475 SHEET 1 AA9 2 ARG A 494 GLU A 496 0 SHEET 2 AA9 2 SER A 501 GLN A 503 -1 O TYR A 502 N MET A 495 SHEET 1 AB1 2 MET A 511 THR A 512 0 SHEET 2 AB1 2 ARG A 560 VAL A 561 1 O ARG A 560 N THR A 512 SHEET 1 AB2 2 MET A 527 ASN A 530 0 SHEET 2 AB2 2 MET A 547 THR A 550 -1 O LEU A 548 N PHE A 529 SHEET 1 AB3 2 GLY A 567 ALA A 570 0 SHEET 2 AB3 2 THR A 582 TYR A 585 -1 O GLY A 583 N MET A 569 SHEET 1 AB4 2 TRP A 608 LYS A 610 0 SHEET 2 AB4 2 PHE A 627 LEU A 629 1 O LEU A 629 N ALA A 609 SHEET 1 AB5 2 ALA A 702 PRO A 703 0 SHEET 2 AB5 2 TYR A 709 ARG A 710 -1 O ARG A 710 N ALA A 702 SHEET 1 AB6 2 VAL R 310 VAL R 311 0 SHEET 2 AB6 2 VAL R 332 LEU R 333 -1 O LEU R 333 N VAL R 310 SHEET 1 AB7 3 TRP R 346 THR R 350 0 SHEET 2 AB7 3 GLY R 375 GLU R 384 -1 O LYS R 380 N GLN R 347 SHEET 3 AB7 3 HIS R 389 VAL R 398 -1 O VAL R 396 N TYR R 377 CISPEP 1 PRO A 505 PRO A 506 0 -9.19 CISPEP 2 GLY R 314 GLU R 315 0 9.98 CISPEP 3 LEU R 321 PRO R 322 0 4.03 CISPEP 4 LEU R 333 GLN R 334 0 0.77 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000