HEADER HYDROLASE 31-JAN-19 6JD9 TITLE PROTEUS MIRABILIS LIPASE MUTANT - I118V/E130G COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPASE; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 584; SOURCE 4 GENE: LIP, AM402_13560, NCTC10975_00950; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIPASE, PROTEUS MIRABILIS LIPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.HEATER,W.S.CHAN,M.K.CHAN REVDAT 2 27-MAR-24 6JD9 1 REMARK REVDAT 1 24-JUL-19 6JD9 0 JRNL AUTH B.S.HEATER,W.S.CHAN,M.M.LEE,M.K.CHAN JRNL TITL DIRECTED EVOLUTION OF A GENETICALLY ENCODED IMMOBILIZED JRNL TITL 2 LIPASE FOR THE EFFICIENT PRODUCTION OF BIODIESEL FROM WASTE JRNL TITL 3 COOKING OIL. JRNL REF BIOTECHNOL BIOFUELS V. 12 165 2019 JRNL REFN ESSN 1754-6834 JRNL PMID 31297153 JRNL DOI 10.1186/S13068-019-1509-5 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2089 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1440 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.025 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2282 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2160 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3096 ; 2.353 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4947 ; 1.212 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 6.178 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;38.241 ;24.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;12.269 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2644 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JD9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41629 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 63.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 70% MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.39400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.19700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 17 O HOH A 401 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 26 CG TYR A 26 CD1 -0.081 REMARK 500 GLU A 163 CG GLU A 163 CD 0.096 REMARK 500 GLU A 163 CD GLU A 163 OE1 0.091 REMARK 500 TYR A 172 CE1 TYR A 172 CZ -0.125 REMARK 500 GLU A 183 CB GLU A 183 CG -0.116 REMARK 500 GLU A 183 CD GLU A 183 OE2 -0.093 REMARK 500 VAL A 235 CB VAL A 235 CG1 -0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 30 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE A 47 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 GLU A 51 OE1 - CD - OE2 ANGL. DEV. = -7.9 DEGREES REMARK 500 PHE A 60 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET A 219 CG - SD - CE ANGL. DEV. = -25.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 79.00 99.16 REMARK 500 PHE A 47 50.28 -104.19 REMARK 500 SER A 79 -105.32 67.55 REMARK 500 LYS A 208 -120.36 68.71 REMARK 500 ILE A 246 -66.38 -92.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 210 OD1 REMARK 620 2 ASP A 213 OD2 93.4 REMARK 620 3 ASP A 256 OD1 85.8 169.4 REMARK 620 4 GLN A 260 O 163.8 90.5 93.3 REMARK 620 5 LEU A 264 O 84.7 90.2 100.2 79.5 REMARK 620 6 HOH A 423 O 93.3 82.3 87.2 102.9 172.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 303 DBREF1 6JD9 A 2 287 UNP A0A1Z1SX23_PROMI DBREF2 6JD9 A A0A1Z1SX23 2 287 SEQADV 6JD9 VAL A 118 UNP A0A1Z1SX2 ILE 118 ENGINEERED MUTATION SEQADV 6JD9 GLY A 130 UNP A0A1Z1SX2 GLU 130 ENGINEERED MUTATION SEQRES 1 A 286 SER THR LYS TYR PRO ILE VAL LEU VAL HIS GLY LEU ALA SEQRES 2 A 286 GLY PHE ASN GLU ILE VAL GLY PHE PRO TYR PHE TYR GLY SEQRES 3 A 286 ILE ALA ASP ALA LEU ARG GLN ASP GLY HIS GLN VAL PHE SEQRES 4 A 286 THR ALA SER LEU SER ALA PHE ASN SER ASN GLU VAL ARG SEQRES 5 A 286 GLY LYS GLN LEU TRP GLN PHE VAL GLN THR LEU LEU GLN SEQRES 6 A 286 GLU THR GLN ALA LYS LYS VAL ASN PHE ILE GLY HIS SER SEQRES 7 A 286 GLN GLY PRO LEU ALA CYS ARG TYR VAL ALA ALA ASN TYR SEQRES 8 A 286 PRO ASP SER VAL ALA SER VAL THR SER ILE ASN GLY VAL SEQRES 9 A 286 ASN HIS GLY SER GLU ILE ALA ASP LEU TYR ARG ARG VAL SEQRES 10 A 286 MET ARG LYS ASP SER ILE PRO GLU TYR ILE VAL GLY LYS SEQRES 11 A 286 VAL LEU ASN ALA PHE GLY THR ILE ILE SER THR PHE SER SEQRES 12 A 286 GLY HIS ARG GLY ASP PRO GLN ASP ALA ILE ALA ALA LEU SEQRES 13 A 286 GLU SER LEU THR THR GLU GLN VAL THR GLU PHE ASN ASN SEQRES 14 A 286 LYS TYR PRO GLN ALA LEU PRO LYS THR PRO GLY GLY GLU SEQRES 15 A 286 GLY ASP GLU ILE VAL ASN GLY VAL HIS TYR TYR CYS PHE SEQRES 16 A 286 GLY SER TYR ILE GLN GLY LEU ILE ALA GLY GLU LYS GLY SEQRES 17 A 286 ASN LEU LEU ASP PRO THR HIS ALA ALA MET ARG VAL LEU SEQRES 18 A 286 ASN THR PHE PHE THR GLU LYS GLN ASN ASP GLY LEU VAL SEQRES 19 A 286 GLY ARG SER SER MET ARG LEU GLY LYS LEU ILE LYS ASP SEQRES 20 A 286 ASP TYR ALA GLN ASP HIS ILE ASP MET VAL ASN GLN VAL SEQRES 21 A 286 ALA GLY LEU VAL GLY TYR ASN GLU ASP ILE VAL ALA ILE SEQRES 22 A 286 TYR THR GLN HIS ALA LYS TYR LEU ALA SER LYS GLN LEU HET CA A 301 1 HET MPD A 302 8 HET MPD A 303 8 HETNAM CA CALCIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 CA CA 2+ FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 HOH *215(H2 O) HELIX 1 AA1 GLY A 15 GLY A 21 1 7 HELIX 2 AA2 GLY A 27 ASP A 35 1 9 HELIX 3 AA3 SER A 49 GLN A 69 1 21 HELIX 4 AA4 GLN A 80 TYR A 92 1 13 HELIX 5 AA5 SER A 109 ARG A 120 1 12 HELIX 6 AA6 PRO A 125 GLY A 145 1 21 HELIX 7 AA7 GLN A 151 LEU A 160 5 10 HELIX 8 AA8 THR A 161 TYR A 172 1 12 HELIX 9 AA9 LEU A 203 LEU A 212 5 10 HELIX 10 AB1 ASP A 213 THR A 224 1 12 HELIX 11 AB2 GLY A 236 ARG A 241 5 6 HELIX 12 AB3 ILE A 255 ASN A 259 5 5 HELIX 13 AB4 ASP A 270 LYS A 285 1 16 SHEET 1 AA1 6 VAL A 39 LEU A 44 0 SHEET 2 AA1 6 ILE A 7 GLY A 12 1 N HIS A 11 O LEU A 44 SHEET 3 AA1 6 VAL A 73 HIS A 78 1 O ILE A 76 N VAL A 8 SHEET 4 AA1 6 VAL A 96 ILE A 102 1 O ILE A 102 N GLY A 77 SHEET 5 AA1 6 VAL A 191 SER A 198 1 O PHE A 196 N SER A 101 SHEET 6 AA1 6 ILE A 187 VAL A 188 -1 N VAL A 188 O VAL A 191 SHEET 1 AA2 6 VAL A 39 LEU A 44 0 SHEET 2 AA2 6 ILE A 7 GLY A 12 1 N HIS A 11 O LEU A 44 SHEET 3 AA2 6 VAL A 73 HIS A 78 1 O ILE A 76 N VAL A 8 SHEET 4 AA2 6 VAL A 96 ILE A 102 1 O ILE A 102 N GLY A 77 SHEET 5 AA2 6 VAL A 191 SER A 198 1 O PHE A 196 N SER A 101 SHEET 6 AA2 6 LYS A 244 TYR A 250 1 O ILE A 246 N CYS A 195 LINK OD1 ASN A 210 CA CA A 301 1555 1555 2.35 LINK OD2 ASP A 213 CA CA A 301 1555 1555 2.34 LINK OD1 ASP A 256 CA CA A 301 1555 1555 2.29 LINK O GLN A 260 CA CA A 301 1555 1555 2.39 LINK O LEU A 264 CA CA A 301 1555 1555 2.26 LINK CA CA A 301 O HOH A 423 1555 1555 2.37 CISPEP 1 GLN A 260 VAL A 261 0 4.76 SITE 1 AC1 7 ASN A 210 ASP A 213 ASP A 256 GLN A 260 SITE 2 AC1 7 VAL A 261 LEU A 264 HOH A 423 SITE 1 AC2 4 PHE A 143 ALA A 153 HOH A 538 HOH A 572 SITE 1 AC3 6 SER A 79 GLN A 80 LEU A 234 HIS A 254 SITE 2 AC3 6 ILE A 255 HOH A 461 CRYST1 65.310 65.310 63.591 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015312 0.008840 0.000000 0.00000 SCALE2 0.000000 0.017680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015725 0.00000