HEADER VIRAL PROTEIN 02-FEB-19 6JDU TITLE CRYSTAL STRUCTURE OF PRRSV NSP10 (HELICASE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PP1B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REPLICASE POLYPROTEIN 1AB; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME SOURCE 3 VIRUS; SOURCE 4 ORGANISM_COMMON: PRRSV; SOURCE 5 ORGANISM_TAXID: 28344; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELICASE, ATPASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.TANG,Z.CHEN REVDAT 3 22-NOV-23 6JDU 1 JRNL REVDAT 2 19-AUG-20 6JDU 1 JRNL LINK REVDAT 1 05-FEB-20 6JDU 0 JRNL AUTH C.TANG,Z.DENG,X.LI,M.YANG,Z.TIAN,Z.CHEN,G.WANG,W.WU, JRNL AUTH 2 W.H.FENG,G.ZHANG,Z.CHEN JRNL TITL HELICASE OF TYPE 2 PORCINE REPRODUCTIVE AND RESPIRATORY JRNL TITL 2 SYNDROME VIRUS STRAIN HV REVEALS A UNIQUE STRUCTURE. JRNL REF VIRUSES V. 12 2020 JRNL REFN ESSN 1999-4915 JRNL PMID 32075207 JRNL DOI 10.3390/V12020215 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 15074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 877 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.901 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.245 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.539 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3243 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2880 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4438 ; 1.147 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6660 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 5.792 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;33.932 ;23.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 465 ;15.335 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.818 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3665 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 645 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1698 ; 1.443 ; 5.118 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1697 ; 1.443 ; 5.115 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2119 ; 2.609 ; 7.667 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2120 ; 2.609 ; 7.671 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1545 ; 1.054 ; 5.052 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1545 ; 1.054 ; 5.052 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2320 ; 1.941 ; 7.552 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3394 ; 4.357 ;58.597 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3381 ; 4.343 ;58.695 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.03 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6JDR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, NA HEPES, CALCIUM CHLORIDE, REMARK 280 PH 7.03, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.84800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.45700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.45700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.77200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.45700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.45700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.92400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.45700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.45700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.77200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.45700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.45700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.92400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.84800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 396 REMARK 465 ASP A 397 REMARK 465 GLU A 398 REMARK 465 GLN A 399 REMARK 465 LEU A 400 REMARK 465 ILE A 401 REMARK 465 VAL A 402 REMARK 465 LEU A 403 REMARK 465 ASP A 404 REMARK 465 ALA A 438 REMARK 465 ASP A 439 REMARK 465 LEU A 440 REMARK 465 GLU A 441 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ILE A 80 CD1 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 106 CZ NH1 NH2 REMARK 470 ILE A 108 CG2 CD1 REMARK 470 ARG A 109 CZ NH1 NH2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LYS A 130 CE NZ REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 145 NE CZ NH1 NH2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 HIS A 157 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 188 CZ NH1 NH2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 210 CZ NH1 NH2 REMARK 470 LYS A 241 NZ REMARK 470 LEU A 247 CD1 CD2 REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 LEU A 253 CG CD1 CD2 REMARK 470 ILE A 283 CD1 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 SER A 327 OG REMARK 470 LEU A 344 CD1 CD2 REMARK 470 ILE A 368 CD1 REMARK 470 ARG A 375 NE CZ NH1 NH2 REMARK 470 VAL A 394 CG1 CG2 REMARK 470 ARG A 405 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 406 CG OD1 ND2 REMARK 470 ASN A 407 CG OD1 ND2 REMARK 470 ARG A 408 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 ILE A 410 CG1 CG2 CD1 REMARK 470 GLN A 414 CG CD OE1 NE2 REMARK 470 ASN A 418 CG OD1 ND2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 ARG A 423 CG CD NE CZ NH1 NH2 REMARK 470 THR A 425 OG1 CG2 REMARK 470 ASP A 426 CG OD1 OD2 REMARK 470 LYS A 427 CG CD CE NZ REMARK 470 ARG A 428 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 40 -38.43 -29.51 REMARK 500 TRP A 216 103.03 -47.83 REMARK 500 LYS A 220 -77.12 -78.19 REMARK 500 LEU A 253 90.36 -68.07 REMARK 500 ASP A 326 -126.96 59.06 REMARK 500 THR A 411 41.25 -103.17 REMARK 500 VAL A 412 56.63 34.14 REMARK 500 GLN A 414 91.61 -64.21 REMARK 500 LYS A 421 -70.40 -164.77 REMARK 500 ASP A 426 108.63 -173.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 768 DISTANCE = 7.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 10 SG 105.8 REMARK 620 3 CYS A 25 SG 115.9 105.7 REMARK 620 4 HIS A 28 ND1 119.7 114.9 94.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 20 SG REMARK 620 2 HIS A 32 NE2 106.9 REMARK 620 3 HIS A 34 ND1 116.2 120.0 REMARK 620 4 CYS A 35 SG 107.0 101.6 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 41 SG REMARK 620 2 HIS A 43 ND1 100.1 REMARK 620 3 CYS A 50 SG 101.6 104.4 REMARK 620 4 CYS A 53 SG 117.9 119.5 111.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 66 OE2 REMARK 620 2 GLU A 69 OE1 80.8 REMARK 620 3 GLU A 69 OE2 78.8 47.8 REMARK 620 4 ALA A 228 O 57.0 56.5 95.6 REMARK 620 5 SER A 260 O 60.1 60.5 101.0 5.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 506 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 706 O REMARK 620 2 HOH A 731 O 85.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 DBREF 6JDU A 1 441 UNP J9XNG9 J9XNG9_PRRSV 644 1084 SEQADV 6JDU VAL A 380 UNP J9XNG9 MET 1023 ENGINEERED MUTATION SEQRES 1 A 441 GLY LYS LYS SER ARG MET CYS GLY TYR CYS GLY ALA PRO SEQRES 2 A 441 ALA PRO TYR ALA THR ALA CYS GLY LEU ASP VAL CYS VAL SEQRES 3 A 441 TYR HIS THR HIS PHE HIS GLN HIS CYS PRO VAL ILE ILE SEQRES 4 A 441 TRP CYS GLY HIS PRO ALA GLY SER GLY SER CYS SER GLU SEQRES 5 A 441 CYS GLU PRO PRO LEU GLY LYS GLY THR SER PRO LEU ASP SEQRES 6 A 441 GLU VAL LEU GLU GLN VAL PRO TYR LYS PRO PRO ARG THR SEQRES 7 A 441 VAL ILE MET HIS VAL GLU GLN GLY LEU THR PRO LEU ASP SEQRES 8 A 441 PRO GLY ARG TYR GLN THR ARG ARG GLY LEU VAL SER VAL SEQRES 9 A 441 ARG ARG GLY ILE ARG GLY ASN GLU VAL ASP LEU PRO ASP SEQRES 10 A 441 GLY ASP TYR ALA SER THR ALA LEU LEU PRO THR CYS LYS SEQRES 11 A 441 GLU ILE ASN MET VAL ALA VAL ALA SER ASN VAL LEU ARG SEQRES 12 A 441 SER ARG PHE ILE ILE GLY PRO PRO GLY ALA GLY LYS THR SEQRES 13 A 441 HIS TRP LEU LEU GLN GLN VAL GLN ASP GLY ASP VAL ILE SEQRES 14 A 441 TYR THR PRO THR HIS GLN THR MET LEU ASP MET ILE ARG SEQRES 15 A 441 ALA LEU GLY THR CYS ARG PHE ASN VAL PRO ALA GLY THR SEQRES 16 A 441 THR LEU GLN PHE PRO ALA PRO SER ARG THR GLY PRO TRP SEQRES 17 A 441 VAL ARG ILE LEU ALA GLY GLY TRP CYS PRO GLY LYS ASN SEQRES 18 A 441 SER PHE LEU ASP GLU ALA ALA TYR CYS ASN HIS LEU ASP SEQRES 19 A 441 VAL LEU ARG LEU LEU SER LYS THR THR LEU THR CYS LEU SEQRES 20 A 441 GLY ASP PHE LYS GLN LEU HIS PRO VAL GLY PHE ASP SER SEQRES 21 A 441 HIS CYS TYR VAL PHE ASP ILE MET PRO GLN THR GLN LEU SEQRES 22 A 441 LYS THR ILE TRP ARG PHE GLY GLN ASN ILE CYS ASP ALA SEQRES 23 A 441 ILE GLN PRO ASP TYR ARG ASP LYS LEU MET SER MET VAL SEQRES 24 A 441 ASN THR THR ARG VAL THR TYR VAL GLU LYS PRO VAL ARG SEQRES 25 A 441 TYR GLY GLN VAL LEU THR PRO TYR HIS ARG ASP ARG GLU SEQRES 26 A 441 ASP SER ALA ILE THR ILE ASP SER SER GLN GLY ALA THR SEQRES 27 A 441 PHE ASP VAL VAL THR LEU HIS LEU PRO THR LYS ASP SER SEQRES 28 A 441 LEU ASN ARG GLN ARG ALA LEU VAL ALA ILE THR ARG ALA SEQRES 29 A 441 ARG HIS ALA ILE PHE VAL TYR ASP PRO HIS ARG GLN LEU SEQRES 30 A 441 GLN SER VAL PHE ASP LEU PRO ALA LYS GLY THR PRO VAL SEQRES 31 A 441 ASN LEU ALA VAL HIS ARG ASP GLU GLN LEU ILE VAL LEU SEQRES 32 A 441 ASP ARG ASN ASN ARG GLU ILE THR VAL ALA GLN ALA LEU SEQRES 33 A 441 GLY ASN GLY ASP LYS PHE ARG ALA THR ASP LYS ARG VAL SEQRES 34 A 441 VAL ASP SER LEU ARG ALA ILE CYS ALA ASP LEU GLU HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN 3(ZN 2+) FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *168(H2 O) HELIX 1 AA1 VAL A 26 PHE A 31 5 6 HELIX 2 AA2 CYS A 50 GLU A 54 5 5 HELIX 3 AA3 SER A 62 GLU A 69 1 8 HELIX 4 AA4 ASN A 133 ARG A 143 1 11 HELIX 5 AA5 GLY A 154 VAL A 163 1 10 HELIX 6 AA6 THR A 173 LEU A 184 1 12 HELIX 7 AA7 ALA A 213 GLY A 215 5 3 HELIX 8 AA8 GLU A 226 CYS A 230 5 5 HELIX 9 AA9 ASN A 231 THR A 242 1 12 HELIX 10 AB1 TYR A 263 MET A 268 1 6 HELIX 11 AB2 GLY A 280 GLN A 288 1 9 HELIX 12 AB3 PRO A 289 TYR A 291 5 3 HELIX 13 AB4 TYR A 320 ARG A 324 5 5 HELIX 14 AB5 ASP A 332 GLN A 335 5 4 HELIX 15 AB6 ASN A 353 THR A 362 1 10 HELIX 16 AB7 ARG A 428 ALA A 435 1 8 SHEET 1 AA1 2 TYR A 16 ALA A 17 0 SHEET 2 AA1 2 ASP A 23 VAL A 24 -1 O VAL A 24 N TYR A 16 SHEET 1 AA2 5 THR A 78 VAL A 83 0 SHEET 2 AA2 5 GLY A 118 ALA A 124 -1 O GLY A 118 N VAL A 83 SHEET 3 AA2 5 GLY A 93 THR A 97 -1 N GLN A 96 O THR A 123 SHEET 4 AA2 5 GLY A 100 ARG A 106 -1 O VAL A 102 N TYR A 95 SHEET 5 AA2 5 ASN A 111 VAL A 113 -1 O GLU A 112 N ARG A 105 SHEET 1 AA3 7 TRP A 208 ILE A 211 0 SHEET 2 AA3 7 VAL A 168 THR A 171 1 N ILE A 169 O TRP A 208 SHEET 3 AA3 7 SER A 222 LEU A 224 1 O PHE A 223 N TYR A 170 SHEET 4 AA3 7 LEU A 244 GLY A 248 1 O LEU A 247 N LEU A 224 SHEET 5 AA3 7 ARG A 145 ILE A 148 1 N ARG A 145 O CYS A 246 SHEET 6 AA3 7 GLN A 270 ILE A 276 1 O LEU A 273 N ILE A 148 SHEET 7 AA3 7 LYS A 294 SER A 297 1 O MET A 296 N LYS A 274 SHEET 1 AA4 5 ARG A 303 TYR A 306 0 SHEET 2 AA4 5 ALA A 364 TYR A 371 1 O HIS A 366 N ARG A 303 SHEET 3 AA4 5 PHE A 339 HIS A 345 1 N VAL A 342 O PHE A 369 SHEET 4 AA4 5 GLN A 315 THR A 318 1 N LEU A 317 O HIS A 345 SHEET 5 AA4 5 ILE A 329 THR A 330 1 O ILE A 329 N VAL A 316 SHEET 1 AA5 3 ASN A 406 ARG A 408 0 SHEET 2 AA5 3 ASN A 391 VAL A 394 -1 N LEU A 392 O ARG A 408 SHEET 3 AA5 3 ALA A 424 THR A 425 1 O THR A 425 N ASN A 391 LINK SG CYS A 7 ZN ZN A 502 1555 1555 2.21 LINK SG CYS A 10 ZN ZN A 502 1555 1555 2.12 LINK SG CYS A 20 ZN ZN A 501 1555 1555 2.20 LINK SG CYS A 25 ZN ZN A 502 1555 1555 2.28 LINK ND1 HIS A 28 ZN ZN A 502 1555 1555 1.94 LINK NE2 HIS A 32 ZN ZN A 501 1555 1555 1.96 LINK ND1 HIS A 34 ZN ZN A 501 1555 1555 2.03 LINK SG CYS A 35 ZN ZN A 501 1555 1555 2.05 LINK SG CYS A 41 ZN ZN A 503 1555 1555 2.16 LINK ND1 HIS A 43 ZN ZN A 503 1555 1555 2.04 LINK SG CYS A 50 ZN ZN A 503 1555 1555 2.04 LINK SG CYS A 53 ZN ZN A 503 1555 1555 2.17 LINK OE2 GLU A 66 CA CA A 504 1555 1555 2.48 LINK OE1 GLU A 69 CA CA A 504 1555 1555 2.76 LINK OE2 GLU A 69 CA CA A 504 1555 1555 2.58 LINK O ALA A 228 CA CA A 504 1555 7555 2.42 LINK O SER A 260 CA CA A 504 1555 7555 2.33 LINK CA CA A 506 O HOH A 706 1555 1555 2.86 LINK CA CA A 506 O HOH A 731 1555 1555 2.77 SITE 1 AC1 4 CYS A 20 HIS A 32 HIS A 34 CYS A 35 SITE 1 AC2 4 CYS A 7 CYS A 10 CYS A 25 HIS A 28 SITE 1 AC3 4 CYS A 41 HIS A 43 CYS A 50 CYS A 53 SITE 1 AC4 4 GLU A 66 GLU A 69 ALA A 228 SER A 260 SITE 1 AC5 1 GLU A 52 SITE 1 AC6 3 PRO A 319 HOH A 706 HOH A 731 CRYST1 92.914 92.914 147.696 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006771 0.00000