HEADER HYDROLASE 08-FEB-19 6JF8 TITLE K4U BOUND CRYSTAL STRUCTURE OF CLASS I TYPE B PEPTIDE DEFORMYLASE FROM TITLE 2 ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE DEFORMYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PDF,POLYPEPTIDE DEFORMYLASE; COMPND 5 EC: 3.5.1.88; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 STRAIN: K0420859; SOURCE 5 GENE: DEF, C3415_07350, IX87_00730; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS PEPTIDE DEFORMYLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.H.LEE,T.H.HO,L.W.KANG REVDAT 2 22-NOV-23 6JF8 1 LINK REVDAT 1 12-FEB-20 6JF8 0 JRNL AUTH I.H.LEE,T.H.HO,L.W.KANG JRNL TITL K4U BOUND CRYSTAL STRUCTURE OF CLASS I TYPE B PEPTIDE JRNL TITL 2 DEFORMYLASE FROM ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 64656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.978 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5001 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4699 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6796 ; 2.108 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10888 ; 1.201 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 629 ; 6.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;39.166 ;24.884 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 827 ;12.968 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;15.658 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5594 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 941 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68073 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6JES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 18% (W/V) POLYETHYLENE REMARK 280 GLYCOL 8000, EVAPORATION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.01700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 108 REMARK 465 SER D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 96 CG SD CE REMARK 470 LEU A 98 CD1 CD2 REMARK 470 MET A 118 CG SD CE REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 MET A 130 CG SD CE REMARK 470 ARG A 141 CD NE CZ NH1 NH2 REMARK 470 MET B 96 SD CE REMARK 470 LEU B 98 CD1 CD2 REMARK 470 GLU B 129 CG CD OE1 OE2 REMARK 470 MET B 130 CG SD CE REMARK 470 THR B 133 CG2 REMARK 470 ARG B 141 CD NE CZ NH1 NH2 REMARK 470 MET C 96 SD CE REMARK 470 LEU C 98 CD1 CD2 REMARK 470 GLU C 129 CG CD OE1 OE2 REMARK 470 MET C 130 CG SD CE REMARK 470 ARG C 141 CD NE CZ NH1 NH2 REMARK 470 ARG D 68 CG CD NE CZ NH1 NH2 REMARK 470 MET D 96 SD CE REMARK 470 LEU D 98 CD1 CD2 REMARK 470 MET D 130 CG SD CE REMARK 470 THR D 133 CG2 REMARK 470 ARG D 141 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG C 110 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 MET C 118 CG - SD - CE ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 66 57.07 -153.01 REMARK 500 ALA B 66 54.55 -152.74 REMARK 500 ALA C 66 54.42 -152.01 REMARK 500 ALA D 66 54.26 -152.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 103 SG REMARK 620 2 HIS A 145 NE2 118.5 REMARK 620 3 HIS A 149 NE2 102.6 102.9 REMARK 620 4 LHY A 202 O1 94.8 108.9 130.1 REMARK 620 5 LHY A 202 O2 146.9 94.6 68.9 71.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 103 SG REMARK 620 2 HIS B 145 NE2 117.9 REMARK 620 3 HIS B 149 NE2 104.1 103.1 REMARK 620 4 LHY B 202 O2 149.6 91.7 73.6 REMARK 620 5 LHY B 202 O1 95.3 112.7 124.3 64.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 103 SG REMARK 620 2 HIS C 145 NE2 119.5 REMARK 620 3 HIS C 149 NE2 101.3 104.7 REMARK 620 4 LHY C 202 O2 142.8 97.3 72.0 REMARK 620 5 LHY C 202 O1 93.3 109.7 129.0 67.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 103 SG REMARK 620 2 HIS D 145 NE2 117.5 REMARK 620 3 HIS D 149 NE2 105.5 103.5 REMARK 620 4 LHY D 202 O2 156.2 76.3 88.5 REMARK 620 5 LHY D 202 O1 93.8 111.2 125.9 62.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LHY A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LHY B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LHY C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LHY D 202 DBREF1 6JF8 A 2 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF8 A A0A0E1FIJ3 2 160 DBREF1 6JF8 B 2 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF8 B A0A0E1FIJ3 2 160 DBREF1 6JF8 C 2 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF8 C A0A0E1FIJ3 2 160 DBREF1 6JF8 D 2 160 UNP A0A0E1FIJ3_ACIBA DBREF2 6JF8 D A0A0E1FIJ3 2 160 SEQRES 1 A 159 SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP ILE SEQRES 2 A 159 LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU LEU SEQRES 3 A 159 ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET HIS SEQRES 4 A 159 ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA ALA SEQRES 5 A 159 PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL ALA SEQRES 6 A 159 SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU MET SEQRES 7 A 159 ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU PHE SEQRES 8 A 159 SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SER SEQRES 9 A 159 VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU MET SEQRES 10 A 159 VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET VAL SEQRES 11 A 159 GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL GLN SEQRES 12 A 159 HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL GLU SEQRES 13 A 159 ARG ILE SER SEQRES 1 B 159 SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP ILE SEQRES 2 B 159 LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU LEU SEQRES 3 B 159 ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET HIS SEQRES 4 B 159 ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA ALA SEQRES 5 B 159 PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL ALA SEQRES 6 B 159 SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU MET SEQRES 7 B 159 ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU PHE SEQRES 8 B 159 SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SER SEQRES 9 B 159 VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU MET SEQRES 10 B 159 VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET VAL SEQRES 11 B 159 GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL GLN SEQRES 12 B 159 HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL GLU SEQRES 13 B 159 ARG ILE SER SEQRES 1 C 159 SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP ILE SEQRES 2 C 159 LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU LEU SEQRES 3 C 159 ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET HIS SEQRES 4 C 159 ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA ALA SEQRES 5 C 159 PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL ALA SEQRES 6 C 159 SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU MET SEQRES 7 C 159 ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU PHE SEQRES 8 C 159 SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SER SEQRES 9 C 159 VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU MET SEQRES 10 C 159 VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET VAL SEQRES 11 C 159 GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL GLN SEQRES 12 C 159 HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL GLU SEQRES 13 C 159 ARG ILE SER SEQRES 1 D 159 SER VAL VAL LEU PRO VAL ALA LYS ARG GLY GLU ASP ILE SEQRES 2 D 159 LEU LYS LEU ILE ALA ALA PRO VAL SER ALA ASN GLU LEU SEQRES 3 D 159 ASN SER ASN TRP LEU TYR GLN LEU ALA ASP ALA MET HIS SEQRES 4 D 159 ALA THR MET LEU GLU ARG ASN GLY VAL GLY ILE ALA ALA SEQRES 5 D 159 PRO GLN VAL TYR ILE SER LYS ARG VAL ILE ILE VAL ALA SEQRES 6 D 159 SER ARG PRO ASN PRO ARG TYR PRO ASP ALA PRO GLU MET SEQRES 7 D 159 ASN ALA VAL VAL MET VAL ASN PRO GLU ILE LEU GLU PHE SEQRES 8 D 159 SER SER GLU MET CYS LEU GLY GLU GLU GLY CYS LEU SER SEQRES 9 D 159 VAL PRO ASP GLU ARG GLY GLN VAL GLU ARG ALA GLU MET SEQRES 10 D 159 VAL LYS VAL LYS TYR LEU THR LEU GLN GLY GLU MET VAL SEQRES 11 D 159 GLU THR VAL PHE GLN GLY PHE PRO ALA ARG ILE VAL GLN SEQRES 12 D 159 HIS GLU VAL ASP HIS LEU ASN GLY ILE LEU PHE VAL GLU SEQRES 13 D 159 ARG ILE SER HET ZN A 201 1 HET LHY A 202 16 HET ZN B 201 1 HET LHY B 202 16 HET ZN C 201 1 HET LHY C 202 16 HET ZN D 201 1 HET LHY D 202 16 HETNAM ZN ZINC ION HETNAM LHY L-[(N-HYDROXYAMINO)CARBONYL]PHENYLALANINE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 LHY 4(C10 H12 N2 O4) FORMUL 13 HOH *194(H2 O) HELIX 1 AA1 GLU A 12 LEU A 17 5 6 HELIX 2 AA2 SER A 23 LEU A 27 5 5 HELIX 3 AA3 SER A 29 ARG A 46 1 18 HELIX 4 AA4 PRO A 54 TYR A 57 5 4 HELIX 5 AA5 GLY A 137 ASN A 151 1 15 HELIX 6 AA6 LEU A 154 ILE A 159 5 6 HELIX 7 AA7 GLU B 12 LEU B 17 5 6 HELIX 8 AA8 SER B 23 LEU B 27 5 5 HELIX 9 AA9 SER B 29 ARG B 46 1 18 HELIX 10 AB1 PRO B 54 TYR B 57 5 4 HELIX 11 AB2 GLY B 137 ASN B 151 1 15 HELIX 12 AB3 LEU B 154 ILE B 159 5 6 HELIX 13 AB4 GLU C 12 LEU C 17 5 6 HELIX 14 AB5 SER C 23 LEU C 27 5 5 HELIX 15 AB6 SER C 29 ARG C 46 1 18 HELIX 16 AB7 PRO C 54 TYR C 57 5 4 HELIX 17 AB8 GLY C 137 ASN C 151 1 15 HELIX 18 AB9 LEU C 154 ILE C 159 5 6 HELIX 19 AC1 GLU D 12 LEU D 17 5 6 HELIX 20 AC2 SER D 23 LEU D 27 5 5 HELIX 21 AC3 SER D 29 ARG D 46 1 18 HELIX 22 AC4 PRO D 54 TYR D 57 5 4 HELIX 23 AC5 GLY D 137 ASN D 151 1 15 HELIX 24 AC6 LEU D 154 ILE D 159 5 6 SHEET 1 AA1 5 GLY A 50 ALA A 52 0 SHEET 2 AA1 5 VAL A 62 VAL A 65 -1 O ILE A 64 N ILE A 51 SHEET 3 AA1 5 VAL A 82 PHE A 92 -1 O MET A 84 N ILE A 63 SHEET 4 AA1 5 MET A 118 LEU A 124 -1 O LYS A 122 N GLU A 88 SHEET 5 AA1 5 MET A 130 GLN A 136 -1 O PHE A 135 N VAL A 119 SHEET 1 AA2 2 MET A 96 CYS A 103 0 SHEET 2 AA2 2 VAL A 106 ALA A 116 -1 O GLY A 111 N GLU A 101 SHEET 1 AA3 5 GLY B 50 ALA B 52 0 SHEET 2 AA3 5 VAL B 62 VAL B 65 -1 O ILE B 64 N ILE B 51 SHEET 3 AA3 5 VAL B 82 PHE B 92 -1 O MET B 84 N ILE B 63 SHEET 4 AA3 5 MET B 118 LEU B 124 -1 O LEU B 124 N VAL B 85 SHEET 5 AA3 5 MET B 130 GLN B 136 -1 O PHE B 135 N VAL B 119 SHEET 1 AA4 3 VAL B 106 PRO B 107 0 SHEET 2 AA4 3 MET B 96 CYS B 103 -1 N CYS B 103 O VAL B 106 SHEET 3 AA4 3 ARG B 110 ALA B 116 -1 O VAL B 113 N GLY B 99 SHEET 1 AA5 5 GLY C 50 ALA C 52 0 SHEET 2 AA5 5 VAL C 62 VAL C 65 -1 O ILE C 64 N ILE C 51 SHEET 3 AA5 5 VAL C 82 PHE C 92 -1 O MET C 84 N ILE C 63 SHEET 4 AA5 5 MET C 118 LEU C 124 -1 O LEU C 124 N VAL C 85 SHEET 5 AA5 5 MET C 130 GLN C 136 -1 O PHE C 135 N VAL C 119 SHEET 1 AA6 2 MET C 96 GLU C 101 0 SHEET 2 AA6 2 GLY C 111 ALA C 116 -1 O GLY C 111 N GLU C 101 SHEET 1 AA7 5 GLY D 50 ALA D 52 0 SHEET 2 AA7 5 VAL D 62 VAL D 65 -1 O ILE D 64 N ILE D 51 SHEET 3 AA7 5 VAL D 82 PHE D 92 -1 O MET D 84 N ILE D 63 SHEET 4 AA7 5 MET D 118 LEU D 124 -1 O LEU D 124 N VAL D 85 SHEET 5 AA7 5 MET D 130 GLN D 136 -1 O THR D 133 N VAL D 121 SHEET 1 AA8 2 MET D 96 CYS D 103 0 SHEET 2 AA8 2 VAL D 106 ALA D 116 -1 O ARG D 115 N CYS D 97 LINK SG CYS A 103 ZN ZN A 201 1555 1555 2.28 LINK NE2 HIS A 145 ZN ZN A 201 1555 1555 2.08 LINK NE2 HIS A 149 ZN ZN A 201 1555 1555 2.14 LINK ZN ZN A 201 O1 LHY A 202 1555 1555 1.93 LINK ZN ZN A 201 O2 LHY A 202 1555 1555 2.41 LINK SG CYS B 103 ZN ZN B 201 1555 1555 2.32 LINK NE2 HIS B 145 ZN ZN B 201 1555 1555 2.03 LINK NE2 HIS B 149 ZN ZN B 201 1555 1555 2.13 LINK ZN ZN B 201 O2 LHY B 202 1555 1555 2.22 LINK ZN ZN B 201 O1 LHY B 202 1555 1555 2.17 LINK SG CYS C 103 ZN ZN C 201 1555 1555 2.29 LINK NE2 HIS C 145 ZN ZN C 201 1555 1555 2.08 LINK NE2 HIS C 149 ZN ZN C 201 1555 1555 2.12 LINK ZN ZN C 201 O2 LHY C 202 1555 1555 2.59 LINK ZN ZN C 201 O1 LHY C 202 1555 1555 1.92 LINK SG CYS D 103 ZN ZN D 201 1555 1555 2.30 LINK NE2 HIS D 145 ZN ZN D 201 1555 1555 2.04 LINK NE2 HIS D 149 ZN ZN D 201 1555 1555 2.11 LINK ZN ZN D 201 O2 LHY D 202 1555 1555 1.70 LINK ZN ZN D 201 O1 LHY D 202 1555 1555 2.15 SITE 1 AC1 5 GLN A 55 CYS A 103 HIS A 145 HIS A 149 SITE 2 AC1 5 LHY A 202 SITE 1 AC2 15 GLY A 48 VAL A 49 GLY A 50 GLN A 55 SITE 2 AC2 15 ARG A 72 TYR A 73 GLU A 101 GLY A 102 SITE 3 AC2 15 CYS A 103 LEU A 104 PHE A 138 HIS A 145 SITE 4 AC2 15 GLU A 146 HIS A 149 ZN A 201 SITE 1 AC3 5 GLN B 55 CYS B 103 HIS B 145 HIS B 149 SITE 2 AC3 5 LHY B 202 SITE 1 AC4 15 GLY B 48 VAL B 49 GLY B 50 GLN B 55 SITE 2 AC4 15 ARG B 72 TYR B 73 GLU B 101 GLY B 102 SITE 3 AC4 15 CYS B 103 LEU B 104 PHE B 138 HIS B 145 SITE 4 AC4 15 GLU B 146 HIS B 149 ZN B 201 SITE 1 AC5 5 GLN C 55 CYS C 103 HIS C 145 HIS C 149 SITE 2 AC5 5 LHY C 202 SITE 1 AC6 15 GLY C 48 VAL C 49 GLY C 50 GLN C 55 SITE 2 AC6 15 ARG C 72 TYR C 73 GLU C 101 GLY C 102 SITE 3 AC6 15 CYS C 103 LEU C 104 PHE C 138 HIS C 145 SITE 4 AC6 15 GLU C 146 HIS C 149 ZN C 201 SITE 1 AC7 5 GLN D 55 CYS D 103 HIS D 145 HIS D 149 SITE 2 AC7 5 LHY D 202 SITE 1 AC8 15 GLY D 48 VAL D 49 GLY D 50 GLN D 55 SITE 2 AC8 15 ARG D 72 TYR D 73 GLU D 101 GLY D 102 SITE 3 AC8 15 CYS D 103 LEU D 104 PHE D 138 HIS D 145 SITE 4 AC8 15 GLU D 146 HIS D 149 ZN D 201 CRYST1 71.158 40.034 111.051 90.00 90.02 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014053 0.000000 0.000004 0.00000 SCALE2 0.000000 0.024979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009005 0.00000