HEADER HYDROLASE 17-FEB-19 6JH5 TITLE STRUCTURE OF MARINE BACTERIAL LAMINARINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMCAT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIMARINA; SOURCE 3 ORGANISM_TAXID: 290174; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.YANG,Y.XU,T.MIYAKAWA,L.RU,M.TANOKURA,L.LONG REVDAT 5 22-NOV-23 6JH5 1 REMARK REVDAT 4 25-NOV-20 6JH5 1 JRNL REVDAT 3 07-OCT-20 6JH5 1 JRNL REVDAT 2 30-SEP-20 6JH5 1 AUTHOR JRNL REVDAT 1 03-APR-19 6JH5 0 JRNL AUTH J.YANG,Y.XU,T.MIYAKAWA,L.LONG,M.TANOKURA JRNL TITL MOLECULAR BASIS FOR SUBSTRATE RECOGNITION AND CATALYSIS BY A JRNL TITL 2 MARINE BACTERIAL LAMINARINASE. JRNL REF APPL.ENVIRON.MICROBIOL. V. 86 2020 JRNL REFN ESSN 1098-5336 JRNL PMID 32917756 JRNL DOI 10.1128/AEM.01796-20 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 33173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1725 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1925 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1685 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2623 ; 1.824 ; 1.878 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3850 ; 1.061 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 7.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;36.333 ;24.466 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 285 ; 9.920 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2271 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 927 ; 1.490 ; 1.583 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 926 ; 1.453 ; 1.582 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1157 ; 2.195 ; 2.371 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1158 ; 2.194 ; 2.373 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 998 ; 2.421 ; 1.768 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 999 ; 2.420 ; 1.770 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1467 ; 3.554 ; 2.582 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2573 ; 5.978 ;15.397 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2374 ; 5.188 ;14.136 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 55.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.26600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4CRQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (V/V) ETHONAL, 100 MM MES PH7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.76450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.76450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.38750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.93950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.38750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.93950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.76450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.38750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.93950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.76450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.38750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.93950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 755 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 THR A 253 REMARK 465 ASP A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 171 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 436 O HOH A 685 1.88 REMARK 500 O HOH A 508 O HOH A 722 1.90 REMARK 500 O HOH A 621 O HOH A 660 2.05 REMARK 500 O HOH A 581 O HOH A 600 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 66 CD GLU A 66 OE2 -0.074 REMARK 500 GLU A 135 CD GLU A 135 OE2 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 -166.19 -162.01 REMARK 500 ARG A 94 -54.55 -124.66 REMARK 500 TYR A 99 158.47 81.47 REMARK 500 ASN A 143 -130.50 54.86 REMARK 500 ALA A 146 41.41 -94.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 30 O REMARK 620 2 GLY A 68 O 95.6 REMARK 620 3 ASP A 245 O 80.9 98.2 REMARK 620 4 ASP A 245 OD1 151.0 89.0 70.2 REMARK 620 5 HOH A 404 O 93.3 165.9 94.0 88.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 DBREF 6JH5 A 20 262 PDB 6JH5 6JH5 20 262 SEQRES 1 A 243 MET GLN ASN TRP THR LEU VAL TRP GLN ASP GLU PHE THR SEQRES 2 A 243 ASN GLY ILE SER SER ASP TRP VAL PHE GLU THR GLY ASN SEQRES 3 A 243 GLY ASN SER GLY TRP GLY ASN ASN GLU LEU GLN TYR TYR SEQRES 4 A 243 ARG ARG GLU ASN ALA THR VAL GLU ASN GLY ASN LEU VAL SEQRES 5 A 243 ILE THR ALA LYS ARG GLU SER ILE GLY GLY TYR ASN TYR SEQRES 6 A 243 THR SER THR ARG MET LYS THR GLN GLY ARG LYS SER TRP SEQRES 7 A 243 LYS TYR GLY LYS VAL GLU ALA ARG ILE ALA MET PRO SER SEQRES 8 A 243 PHE MET GLY SER TRP PRO ALA PHE TRP MET LEU GLY ASP SEQRES 9 A 243 ASN ILE SER SER VAL GLY TRP PRO ALA CYS GLY GLU ILE SEQRES 10 A 243 ASP ILE MET GLU HIS VAL ASN THR GLU ALA GLN THR HIS SEQRES 11 A 243 GLY THR ILE HIS TRP GLN ASP HIS ASN ASN THR TYR ALA SEQRES 12 A 243 ASN TYR SER GLY SER ILE PRO VAL SER SER VAL THR SER SEQRES 13 A 243 TYR HIS ILE TYR THR ILE GLU TRP ASP ALA SER VAL ILE SEQRES 14 A 243 LYS TRP PHE VAL ASP GLY ASN LEU TYR HIS GLU ALA SER SEQRES 15 A 243 ILE ALA ASN GLY VAL ASN GLY THR SER GLU PHE HIS ASN SEQRES 16 A 243 ASN PHE PHE ILE LEU LEU ASN MET ALA ILE GLY GLY ASN SEQRES 17 A 243 TRP PRO GLY PHE ASN ILE ASP ASN ASN ALA PHE PRO ALA SEQRES 18 A 243 ARG MET LEU VAL ASP TYR VAL ARG VAL TYR GLN LYS THR SEQRES 19 A 243 ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *367(H2 O) HELIX 1 AA1 ASN A 124 GLY A 129 1 6 HELIX 2 AA2 ALA A 203 HIS A 213 5 11 HELIX 3 AA3 ASP A 234 PHE A 238 5 5 SHEET 1 AA1 4 THR A 24 ASP A 29 0 SHEET 2 AA1 4 ALA A 240 GLN A 251 -1 O VAL A 249 N TRP A 27 SHEET 3 AA1 4 ASN A 69 ILE A 79 -1 N ILE A 72 O MET A 242 SHEET 4 AA1 4 ALA A 63 GLU A 66 -1 N THR A 64 O VAL A 71 SHEET 1 AA2 8 GLN A 56 TYR A 58 0 SHEET 2 AA2 8 TYR A 82 SER A 86 1 O TYR A 84 N TYR A 57 SHEET 3 AA2 8 ASN A 69 ILE A 79 -1 N LYS A 75 O THR A 85 SHEET 4 AA2 8 ALA A 240 GLN A 251 -1 O MET A 242 N ILE A 72 SHEET 5 AA2 8 GLY A 100 ALA A 107 -1 N ALA A 107 O LEU A 243 SHEET 6 AA2 8 HIS A 177 TRP A 183 -1 O TYR A 179 N ALA A 104 SHEET 7 AA2 8 VAL A 187 VAL A 192 -1 O PHE A 191 N THR A 180 SHEET 8 AA2 8 ASN A 195 SER A 201 -1 O HIS A 198 N TRP A 190 SHEET 1 AA3 7 VAL A 40 PHE A 41 0 SHEET 2 AA3 7 ARG A 88 LYS A 90 -1 O LYS A 90 N VAL A 40 SHEET 3 AA3 7 PHE A 216 ILE A 224 -1 O LEU A 220 N MET A 89 SHEET 4 AA3 7 SER A 114 GLY A 122 -1 N TRP A 119 O LEU A 219 SHEET 5 AA3 7 GLU A 135 GLU A 140 -1 O MET A 139 N PHE A 118 SHEET 6 AA3 7 GLN A 147 GLN A 155 -1 O THR A 151 N ASP A 137 SHEET 7 AA3 7 TYR A 161 PRO A 169 -1 O ALA A 162 N TRP A 154 LINK O GLU A 30 CA CA A 301 1555 1555 2.51 LINK O GLY A 68 CA CA A 301 1555 1555 2.46 LINK O ASP A 245 CA CA A 301 1555 1555 2.52 LINK OD1 ASP A 245 CA CA A 301 1555 1555 2.77 LINK CA CA A 301 O HOH A 404 1555 1555 2.70 CISPEP 1 TRP A 130 PRO A 131 0 10.64 CISPEP 2 PHE A 238 PRO A 239 0 -2.43 SITE 1 AC1 4 GLU A 30 GLY A 68 ASP A 245 HOH A 404 CRYST1 66.775 101.879 75.529 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014976 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013240 0.00000