HEADER BIOSYNTHETIC PROTEIN 17-FEB-19 6JHB TITLE CRYSTAL STRUCTURE OF NADPH AND 4-HYDROXYPHENYLPYRUVIC ACID BOUND AERF TITLE 2 FROM MICROCYSTIS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT CHAIN DEHYDROGENASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AERF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROCYSTIS AERUGINOSA DIANCHI905; SOURCE 3 ORGANISM_TAXID: 1235808; SOURCE 4 GENE: AERF, C789_498; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.QIU,Y.WEI,W.ZHU REVDAT 2 22-NOV-23 6JHB 1 REMARK REVDAT 1 27-NOV-19 6JHB 0 JRNL AUTH X.QIU,Y.WEI,W.ZHU,J.FU,X.DUAN,H.JIN,P.ZHU,C.ZHOU,X.YAN JRNL TITL STRUCTURAL AND FUNCTIONAL INVESTIGATION OF AERF, A JRNL TITL 2 NADPH-DEPENDENT ALKENAL DOUBLE BOND REDUCTASE PARTICIPATING JRNL TITL 3 IN THE BIOSYNTHESIS OF CHOI MOIETY OF AERUGINOSIN JRNL REF J.STRUCT.BIOL. 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31726097 JRNL DOI 10.1016/J.JSB.2019.107415 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 25509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1362 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.27 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1795 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.348 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3881 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3672 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5288 ; 1.566 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8426 ; 0.929 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 6.786 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;39.898 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;19.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 632 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4362 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 825 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2012 ; 2.387 ; 4.393 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2011 ; 2.383 ; 4.391 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2509 ; 3.508 ; 6.578 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2510 ; 3.509 ; 6.579 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1869 ; 2.521 ; 4.623 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1870 ; 2.520 ; 4.624 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2775 ; 3.842 ; 6.864 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4476 ; 5.687 ;35.763 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4473 ; 5.688 ;35.763 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9570 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.474 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JH7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M NA HEPES PH7.5, 25 % REMARK 280 (W/V) PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.54800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.32200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.77400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.54800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.77400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.32200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 97 REMARK 465 ASN A 98 REMARK 465 PHE A 99 REMARK 465 ALA A 100 REMARK 465 GLU A 101 REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 GLY A 150 REMARK 465 LYS A 151 REMARK 465 GLU A 152 REMARK 465 PRO A 153 REMARK 465 SER A 154 REMARK 465 PRO A 155 REMARK 465 ARG A 156 REMARK 465 TYR A 205 REMARK 465 ALA A 206 REMARK 465 LYS A 207 REMARK 465 LYS A 208 REMARK 465 GLU A 209 REMARK 465 GLY A 210 REMARK 465 THR A 211 REMARK 465 THR A 212 REMARK 465 PRO A 213 REMARK 465 ASP A 214 REMARK 465 SER A 264 REMARK 465 ALA A 265 REMARK 465 PHE A 266 REMARK 465 LEU A 267 REMARK 465 GLU A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 ALA B 265 REMARK 465 PHE B 266 REMARK 465 LEU B 267 REMARK 465 GLU B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CE NZ REMARK 470 LYS A 26 NZ REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 ARG A 39 NH1 NH2 REMARK 470 GLN A 42 CD OE1 NE2 REMARK 470 ARG A 43 CD NE CZ NH1 NH2 REMARK 470 GLN A 46 OE1 NE2 REMARK 470 GLN A 49 OE1 NE2 REMARK 470 GLN A 53 CD OE1 NE2 REMARK 470 ARG A 62 CD NE CZ NH1 NH2 REMARK 470 GLN A 69 OE1 NE2 REMARK 470 GLN A 71 CD OE1 NE2 REMARK 470 LEU A 81 CD1 CD2 REMARK 470 GLU A 95 CD OE1 OE2 REMARK 470 ASN A 102 CB CG OD1 ND2 REMARK 470 LEU A 103 CD1 CD2 REMARK 470 ILE A 104 CG1 CG2 CD1 REMARK 470 GLU A 105 CB CG CD OE1 OE2 REMARK 470 GLU A 110 CD OE1 OE2 REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 ASN A 114 OD1 ND2 REMARK 470 GLY A 147 CA C O REMARK 470 LEU A 157 CD1 CD2 REMARK 470 LYS A 159 NZ REMARK 470 LYS A 172 CE NZ REMARK 470 ARG A 176 CD NE CZ NH1 NH2 REMARK 470 ARG A 197 CZ NH1 NH2 REMARK 470 GLU A 200 CB CG CD OE1 OE2 REMARK 470 TYR A 201 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 202 CB CG CD1 CD2 REMARK 470 ILE A 204 CG1 CG2 CD1 REMARK 470 ARG A 217 CZ NH1 NH2 REMARK 470 GLU A 218 CG CD OE1 OE2 REMARK 470 ARG A 219 CD NE CZ NH1 NH2 REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS B 6 CD CE NZ REMARK 470 GLN B 42 CG CD OE1 NE2 REMARK 470 ARG B 43 NH1 NH2 REMARK 470 GLN B 46 OE1 NE2 REMARK 470 GLN B 53 OE1 NE2 REMARK 470 GLN B 59 OE1 NE2 REMARK 470 GLN B 69 OE1 NE2 REMARK 470 GLN B 71 CD OE1 NE2 REMARK 470 LYS B 86 CE NZ REMARK 470 ASN B 98 OD1 ND2 REMARK 470 ALA B 100 CB REMARK 470 GLU B 101 OE1 OE2 REMARK 470 ASN B 102 CG OD1 ND2 REMARK 470 LEU B 103 CD1 CD2 REMARK 470 GLU B 105 CB CG CD OE1 OE2 REMARK 470 GLU B 110 CD OE1 OE2 REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 VAL B 115 CG2 REMARK 470 LYS B 136 CE NZ REMARK 470 LYS B 151 CE NZ REMARK 470 GLU B 152 CB CG CD OE1 OE2 REMARK 470 SER B 154 CB OG REMARK 470 ARG B 156 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 172 CE NZ REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 200 CB CG CD OE1 OE2 REMARK 470 LYS B 207 NZ REMARK 470 LYS B 208 CD CE NZ REMARK 470 GLU B 218 CD OE1 OE2 REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 ASN B 227 OD1 ND2 REMARK 470 GLU B 233 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 198 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 200 -79.07 -75.00 REMARK 500 TYR A 201 21.70 -71.93 REMARK 500 ILE A 216 -39.41 87.16 REMARK 500 ILE A 216 3.04 47.16 REMARK 500 ARG A 228 142.92 -173.92 REMARK 500 ASP A 258 14.21 -145.36 REMARK 500 ILE B 146 -93.80 -104.60 REMARK 500 LEU B 157 42.91 -152.94 REMARK 500 ASP B 258 19.14 -154.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 215 ILE A 216 -148.13 REMARK 500 ILE A 216 ARG A 217 145.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ENO B 302 DBREF 6JHB A 1 266 UNP L8NWH6 L8NWH6_MICAE 1 266 DBREF 6JHB B 1 266 UNP L8NWH6 L8NWH6_MICAE 1 266 SEQADV 6JHB LEU A 267 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB GLU A 268 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS A 269 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS A 270 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS A 271 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS A 272 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS A 273 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS A 274 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB LEU B 267 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB GLU B 268 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS B 269 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS B 270 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS B 271 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS B 272 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS B 273 UNP L8NWH6 EXPRESSION TAG SEQADV 6JHB HIS B 274 UNP L8NWH6 EXPRESSION TAG SEQRES 1 A 274 MET ASP LEU GLY LEU LYS ASP LYS VAL ALA LEU ILE THR SEQRES 2 A 274 GLY SER SER ALA GLY ILE GLY PHE THR ILE ALA GLU LYS SEQRES 3 A 274 LEU ALA GLU GLU GLY CYS HIS LEU ILE ILE CYS GLY ARG SEQRES 4 A 274 ASN SER GLN ARG LEU GLU GLN ALA TYR GLN SER LEU ALA SEQRES 5 A 274 GLN ALA TYR PRO ALA GLN GLN ILE LEU ARG LEU VAL ALA SEQRES 6 A 274 ASP VAL HIS GLN ALA GLN ASP SER GLU GLN LEU ILE GLN SEQRES 7 A 274 ASP SER LEU ASN GLN TYR GLY LYS ILE ASP ILE LEU VAL SEQRES 8 A 274 ASN ASN SER GLU GLY ALA ASN PHE ALA GLU ASN LEU ILE SEQRES 9 A 274 GLU ASN LEU SER ASP GLU ASP TRP LEU ASN VAL PHE GLN SEQRES 10 A 274 GLY LYS LEU ILE GLY TYR ILE ARG LEU THR ASN LEU VAL SEQRES 11 A 274 LEU PRO ILE MET LYS LYS GLN HIS TRP GLY ARG ILE VAL SEQRES 12 A 274 ASN ILE ILE GLY THR SER GLY LYS GLU PRO SER PRO ARG SEQRES 13 A 274 LEU VAL LYS SER GLY VAL VAL ASN ALA ALA LEU MET ASN SEQRES 14 A 274 PHE THR LYS SER VAL ALA ARG GLN THR ALA PRO TYR ASN SEQRES 15 A 274 VAL LEU ILE ASN SER VAL ASN PRO GLY VAL ILE ASP THR SEQRES 16 A 274 PRO ARG HIS ARG GLU TYR LEU GLU ILE TYR ALA LYS LYS SEQRES 17 A 274 GLU GLY THR THR PRO ASP LEU ILE ARG GLU ARG ILE LEU SEQRES 18 A 274 LYS THR ILE PRO MET ASN ARG ILE GLY THR THR GLU GLU SEQRES 19 A 274 PHE ALA ASN LEU VAL VAL PHE LEU ALA SER GLU CYS ALA SEQRES 20 A 274 SER TYR ILE THR GLY ILE THR ILE PRO LEU ASP GLY GLY SEQRES 21 A 274 LEU SER SER SER ALA PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 22 A 274 HIS SEQRES 1 B 274 MET ASP LEU GLY LEU LYS ASP LYS VAL ALA LEU ILE THR SEQRES 2 B 274 GLY SER SER ALA GLY ILE GLY PHE THR ILE ALA GLU LYS SEQRES 3 B 274 LEU ALA GLU GLU GLY CYS HIS LEU ILE ILE CYS GLY ARG SEQRES 4 B 274 ASN SER GLN ARG LEU GLU GLN ALA TYR GLN SER LEU ALA SEQRES 5 B 274 GLN ALA TYR PRO ALA GLN GLN ILE LEU ARG LEU VAL ALA SEQRES 6 B 274 ASP VAL HIS GLN ALA GLN ASP SER GLU GLN LEU ILE GLN SEQRES 7 B 274 ASP SER LEU ASN GLN TYR GLY LYS ILE ASP ILE LEU VAL SEQRES 8 B 274 ASN ASN SER GLU GLY ALA ASN PHE ALA GLU ASN LEU ILE SEQRES 9 B 274 GLU ASN LEU SER ASP GLU ASP TRP LEU ASN VAL PHE GLN SEQRES 10 B 274 GLY LYS LEU ILE GLY TYR ILE ARG LEU THR ASN LEU VAL SEQRES 11 B 274 LEU PRO ILE MET LYS LYS GLN HIS TRP GLY ARG ILE VAL SEQRES 12 B 274 ASN ILE ILE GLY THR SER GLY LYS GLU PRO SER PRO ARG SEQRES 13 B 274 LEU VAL LYS SER GLY VAL VAL ASN ALA ALA LEU MET ASN SEQRES 14 B 274 PHE THR LYS SER VAL ALA ARG GLN THR ALA PRO TYR ASN SEQRES 15 B 274 VAL LEU ILE ASN SER VAL ASN PRO GLY VAL ILE ASP THR SEQRES 16 B 274 PRO ARG HIS ARG GLU TYR LEU GLU ILE TYR ALA LYS LYS SEQRES 17 B 274 GLU GLY THR THR PRO ASP LEU ILE ARG GLU ARG ILE LEU SEQRES 18 B 274 LYS THR ILE PRO MET ASN ARG ILE GLY THR THR GLU GLU SEQRES 19 B 274 PHE ALA ASN LEU VAL VAL PHE LEU ALA SER GLU CYS ALA SEQRES 20 B 274 SER TYR ILE THR GLY ILE THR ILE PRO LEU ASP GLY GLY SEQRES 21 B 274 LEU SER SER SER ALA PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 22 B 274 HIS HET NDP A 301 48 HET NDP B 301 48 HET ENO B 302 13 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM ENO 3-(4-HYDROXY-PHENYL)PYRUVIC ACID HETSYN ENO HPP FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 ENO C9 H8 O4 FORMUL 6 HOH *53(H2 O) HELIX 1 AA1 ALA A 17 GLU A 30 1 14 HELIX 2 AA2 ASN A 40 TYR A 55 1 16 HELIX 3 AA3 GLN A 69 GLY A 85 1 17 HELIX 4 AA4 LEU A 103 LEU A 107 5 5 HELIX 5 AA5 SER A 108 GLN A 117 1 10 HELIX 6 AA6 GLY A 118 HIS A 138 1 21 HELIX 7 AA7 VAL A 158 ALA A 179 1 22 HELIX 8 AA8 THR A 195 TYR A 201 1 7 HELIX 9 AA9 ARG A 217 LYS A 222 1 6 HELIX 10 AB1 THR A 231 ALA A 243 1 13 HELIX 11 AB2 SER A 244 SER A 248 5 5 HELIX 12 AB3 ALA B 17 GLU B 30 1 14 HELIX 13 AB4 ASN B 40 TYR B 55 1 16 HELIX 14 AB5 GLN B 69 GLY B 85 1 17 HELIX 15 AB6 LEU B 103 LEU B 107 5 5 HELIX 16 AB7 SER B 108 GLY B 118 1 11 HELIX 17 AB8 GLY B 118 HIS B 138 1 21 HELIX 18 AB9 GLY B 147 LYS B 151 5 5 HELIX 19 AC1 LEU B 157 ALA B 179 1 23 HELIX 20 AC2 THR B 195 GLY B 210 1 16 HELIX 21 AC3 THR B 212 ILE B 224 1 13 HELIX 22 AC4 THR B 231 ALA B 243 1 13 HELIX 23 AC5 SER B 244 SER B 248 5 5 HELIX 24 AC6 GLY B 260 SER B 264 5 5 SHEET 1 AA1 7 ILE A 60 VAL A 64 0 SHEET 2 AA1 7 HIS A 33 GLY A 38 1 N LEU A 34 O LEU A 61 SHEET 3 AA1 7 VAL A 9 ILE A 12 1 N ALA A 10 O HIS A 33 SHEET 4 AA1 7 ILE A 89 ASN A 92 1 O ILE A 89 N LEU A 11 SHEET 5 AA1 7 GLY A 140 ILE A 145 1 O ILE A 145 N ASN A 92 SHEET 6 AA1 7 VAL A 183 PRO A 190 1 O LEU A 184 N GLY A 140 SHEET 7 AA1 7 THR A 254 LEU A 257 1 O LEU A 257 N ASN A 189 SHEET 1 AA2 7 ILE B 60 VAL B 64 0 SHEET 2 AA2 7 HIS B 33 GLY B 38 1 N ILE B 36 O LEU B 61 SHEET 3 AA2 7 VAL B 9 ILE B 12 1 N ALA B 10 O HIS B 33 SHEET 4 AA2 7 ILE B 89 ASN B 92 1 O ILE B 89 N LEU B 11 SHEET 5 AA2 7 GLY B 140 ILE B 145 1 O ILE B 145 N ASN B 92 SHEET 6 AA2 7 VAL B 183 PRO B 190 1 O LEU B 184 N GLY B 140 SHEET 7 AA2 7 THR B 254 LEU B 257 1 O ILE B 255 N ASN B 189 SITE 1 AC1 26 GLY A 14 SER A 16 ALA A 17 ILE A 19 SITE 2 AC1 26 GLY A 38 ARG A 39 ASN A 40 ALA A 65 SITE 3 AC1 26 ASP A 66 VAL A 67 HIS A 68 ASN A 93 SITE 4 AC1 26 SER A 94 GLU A 95 LYS A 119 TYR A 123 SITE 5 AC1 26 ILE A 145 GLY A 147 PRO A 190 GLY A 191 SITE 6 AC1 26 ILE A 193 THR A 195 PRO A 196 ARG A 197 SITE 7 AC1 26 HOH A 412 HOH A 426 SITE 1 AC2 30 GLY B 14 SER B 16 ALA B 17 GLY B 18 SITE 2 AC2 30 ILE B 19 GLY B 38 ARG B 39 ASN B 40 SITE 3 AC2 30 ARG B 43 ALA B 65 ASP B 66 VAL B 67 SITE 4 AC2 30 HIS B 68 ASN B 93 SER B 94 GLU B 95 SITE 5 AC2 30 LYS B 119 TYR B 123 ILE B 145 ILE B 146 SITE 6 AC2 30 PRO B 190 GLY B 191 VAL B 192 ILE B 193 SITE 7 AC2 30 THR B 195 PRO B 196 ARG B 197 ENO B 302 SITE 8 AC2 30 HOH B 404 HOH B 412 SITE 1 AC3 10 ILE B 146 GLY B 147 THR B 148 SER B 149 SITE 2 AC3 10 LEU B 157 SER B 160 ASN B 164 HIS B 198 SITE 3 AC3 10 NDP B 301 HOH B 405 CRYST1 101.124 101.124 115.096 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009889 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008688 0.00000