HEADER CYTOKINE 18-FEB-19 6JHD TITLE SOLUTION STRUCTURE OF IFN ALPHA8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON ALPHA-8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IFN-ALPHA-8,INTERFERON ALPHA-B,LEIF B,INTERFERON ALPHA-B2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IFNA8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTERFERON ALPHA8, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR A.KEN-ICHI,M.SHIGEYUKI REVDAT 2 14-JUN-23 6JHD 1 REMARK REVDAT 1 19-FEB-20 6JHD 0 JRNL AUTH A.KEN-ICHI,M.SHIGEYUKI JRNL TITL DETERMINATION OF SOLUTION STRUCTURE OF INTERFERON ALPHA8: JRNL TITL 2 NOVEL INSIGHTS INTO THE PREFERRED INTERACTION WITH IFNAR2 JRNL TITL 3 AMONG ITS SUBTYPES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300010835. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 3.4 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-13C; U-15N] REMARK 210 INTERFERON, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; HN(CA)CO; 3D HN(CO)CA; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRPIPE, NMRVIEW REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 66 HG1 THR A 70 1.55 REMARK 500 O ASP A 78 H LEU A 82 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 5 82.19 -178.91 REMARK 500 1 THR A 6 -176.47 59.88 REMARK 500 1 LEU A 9 -74.50 -70.35 REMARK 500 1 ALA A 14 -5.93 80.36 REMARK 500 1 LEU A 30 -62.01 -132.49 REMARK 500 1 GLN A 47 65.29 -172.52 REMARK 500 1 LYS A 71 -33.30 87.96 REMARK 500 1 ILE A 107 40.10 -102.36 REMARK 500 1 GLU A 108 -36.24 -134.61 REMARK 500 1 SER A 137 -71.44 -71.19 REMARK 500 1 SER A 138 -46.32 -174.47 REMARK 500 1 ILE A 156 56.99 -103.74 REMARK 500 1 ASN A 157 -42.52 -178.21 REMARK 500 1 LYS A 163 137.94 63.54 REMARK 500 1 SER A 164 -123.10 -121.94 REMARK 500 1 LYS A 165 39.62 -170.49 REMARK 500 2 LEU A 3 86.39 59.46 REMARK 500 2 PRO A 4 81.52 -59.67 REMARK 500 2 SER A 8 31.82 -164.25 REMARK 500 2 LEU A 9 -66.35 -106.71 REMARK 500 2 ARG A 12 80.57 60.86 REMARK 500 2 ARG A 13 -43.39 -168.75 REMARK 500 2 LEU A 30 -61.70 -132.37 REMARK 500 2 GLN A 47 64.67 -173.11 REMARK 500 2 THR A 70 -73.80 -82.21 REMARK 500 2 LYS A 71 -48.90 176.24 REMARK 500 2 GLU A 103 62.07 67.80 REMARK 500 2 ILE A 107 38.69 -96.02 REMARK 500 2 SER A 137 -76.33 -70.72 REMARK 500 2 SER A 138 -48.01 -168.78 REMARK 500 2 ARG A 161 19.56 57.87 REMARK 500 3 GLN A 5 -56.22 -176.37 REMARK 500 3 ASN A 11 -70.93 -84.31 REMARK 500 3 LEU A 30 -62.89 -139.75 REMARK 500 3 GLN A 47 66.14 -162.10 REMARK 500 3 THR A 70 -70.67 -77.93 REMARK 500 3 LYS A 71 -47.45 169.90 REMARK 500 3 LEU A 96 -55.19 -178.85 REMARK 500 3 GLU A 103 61.74 69.21 REMARK 500 3 ILE A 107 64.27 -111.73 REMARK 500 3 GLU A 108 -46.61 -135.25 REMARK 500 3 SER A 137 -76.89 -69.75 REMARK 500 3 SER A 138 -47.97 -167.21 REMARK 500 3 LYS A 163 -42.05 -170.28 REMARK 500 3 SER A 164 -123.41 -122.91 REMARK 500 3 LYS A 165 42.29 -176.12 REMARK 500 4 GLN A 5 172.72 60.18 REMARK 500 4 LEU A 9 160.31 59.91 REMARK 500 4 ASN A 11 -110.41 -63.51 REMARK 500 4 LEU A 30 -65.90 -136.84 REMARK 500 REMARK 500 THIS ENTRY HAS 218 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 12031 RELATED DB: BMRB DBREF 6JHD A 1 166 UNP P32881 IFNA8_HUMAN 24 189 SEQRES 1 A 166 CYS ASP LEU PRO GLN THR HIS SER LEU GLY ASN ARG ARG SEQRES 2 A 166 ALA LEU ILE LEU LEU ALA GLN MET ARG ARG ILE SER PRO SEQRES 3 A 166 PHE SER CYS LEU LYS ASP ARG HIS ASP PHE GLU PHE PRO SEQRES 4 A 166 GLN GLU GLU PHE ASP ASP LYS GLN PHE GLN LYS ALA GLN SEQRES 5 A 166 ALA ILE SER VAL LEU HIS GLU MET ILE GLN GLN THR PHE SEQRES 6 A 166 ASN LEU PHE SER THR LYS ASP SER SER ALA ALA LEU ASP SEQRES 7 A 166 GLU THR LEU LEU ASP GLU PHE TYR ILE GLU LEU ASP GLN SEQRES 8 A 166 GLN LEU ASN ASP LEU GLU SER CYS VAL MET GLN GLU VAL SEQRES 9 A 166 GLY VAL ILE GLU SER PRO LEU MET TYR GLU ASP SER ILE SEQRES 10 A 166 LEU ALA VAL ARG LYS TYR PHE GLN ARG ILE THR LEU TYR SEQRES 11 A 166 LEU THR GLU LYS LYS TYR SER SER CYS ALA TRP GLU VAL SEQRES 12 A 166 VAL ARG ALA GLU ILE MET ARG SER PHE SER LEU SER ILE SEQRES 13 A 166 ASN LEU GLN LYS ARG LEU LYS SER LYS GLU HELIX 1 AA1 ALA A 14 GLN A 20 1 7 HELIX 2 AA2 SER A 25 CYS A 29 5 5 HELIX 3 AA3 PRO A 39 ASP A 44 1 6 HELIX 4 AA4 GLN A 49 THR A 70 1 22 HELIX 5 AA5 SER A 73 LEU A 77 5 5 HELIX 6 AA6 ASP A 78 GLU A 103 1 26 HELIX 7 AA7 SER A 109 LYS A 135 1 27 HELIX 8 AA8 SER A 138 ILE A 156 1 19 HELIX 9 AA9 ASN A 157 ARG A 161 5 5 SSBOND 1 CYS A 1 CYS A 99 1555 1555 2.03 SSBOND 2 CYS A 29 CYS A 139 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1