HEADER PROTEIN BINDING/HYDROLASE 19-FEB-19 6JHW TITLE STRUCTURE OF ANTI-CRISPR ACRIIC3 AND NMECAS9 HNH COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACRIIC3; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9; COMPND 7 CHAIN: B, D; COMPND 8 FRAGMENT: HNH DOMAIN; COMPND 9 EC: 3.1.-.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 8 ORGANISM_TAXID: 487; SOURCE 9 GENE: CAS9, ERS040961_01379; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PROTEIN BINDING, PROTEIN BINDING-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.SUH,B.J.LEE,S.J.LEE,Y.KIM REVDAT 4 22-NOV-23 6JHW 1 REMARK REVDAT 3 18-DEC-19 6JHW 1 JRNL REVDAT 2 11-SEP-19 6JHW 1 SOURCE DBREF SEQADV REVDAT 1 28-AUG-19 6JHW 0 JRNL AUTH Y.KIM,S.J.LEE,H.J.YOON,N.K.KIM,B.J.LEE,J.Y.SUH JRNL TITL ANTI-CRISPR ACRIIC3 DISCRIMINATES BETWEEN CAS9 ORTHOLOGS VIA JRNL TITL 2 TARGETING THE VARIABLE SURFACE OF THE HNH NUCLEASE DOMAIN. JRNL REF FEBS J. V. 286 4661 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31389128 JRNL DOI 10.1111/FEBS.15037 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2082 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4198 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.77000 REMARK 3 B22 (A**2) : 1.77000 REMARK 3 B33 (A**2) : -3.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4278 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3828 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5728 ; 1.581 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9016 ; 1.036 ; 1.641 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 7.153 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;30.418 ;21.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 812 ;17.412 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;19.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4842 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 830 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2028 ; 4.553 ; 4.332 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2027 ; 4.550 ; 4.330 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2528 ; 6.413 ; 6.476 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2529 ; 6.412 ; 6.478 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2250 ; 4.562 ; 4.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2251 ; 4.561 ; 4.827 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3201 ; 6.402 ; 7.068 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4930 ; 9.140 ;51.174 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4929 ; 9.140 ;51.182 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29510 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: 6JHV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.07 M NACL, 0.05 M SODIUM CITRATE, PH REMARK 280 4.5, 22% (V/V) PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.68150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.52225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.84075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN B 655 REMARK 465 MET C 1 REMARK 465 GLN D 655 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO D 591 CD PRO D 591 N -0.263 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 591 C - N - CD ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG D 594 C - N - CA ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 64 0.33 -68.66 REMARK 500 ASN B 601 15.87 -142.06 REMARK 500 ASN B 602 35.99 -74.14 REMARK 500 SER B 629 150.61 -47.97 REMARK 500 ASP C 45 48.50 -88.69 REMARK 500 ILE C 114 -61.87 -93.22 REMARK 500 PRO D 591 48.93 -86.53 REMARK 500 TRP D 596 -82.08 -125.21 REMARK 500 ASP D 597 -62.58 -106.78 REMARK 500 PHE D 600 101.12 -54.07 REMARK 500 ASN D 602 26.32 -150.64 REMARK 500 ASN D 613 11.05 -141.36 REMARK 500 GLU D 621 -73.94 -56.90 REMARK 500 ASN D 624 53.95 70.04 REMARK 500 SER D 629 150.35 -45.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 16 LYS C 17 -148.93 REMARK 500 SER D 599 PHE D 600 147.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 20 0.10 SIDE CHAIN REMARK 500 ARG A 97 0.09 SIDE CHAIN REMARK 500 ARG B 538 0.08 SIDE CHAIN REMARK 500 ARG D 651 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE MATCH UNP A0A3E2QDI5_NEIME WAS OBSOLETED WITH REMARK 999 NO SUPERSEDE. THERE IS NO MATCH IN UNIPROT. DBREF 6JHW A 1 117 PDB 6JHW 6JHW 1 117 DBREF1 6JHW B 518 655 UNP A0A0T7L299_NEIME DBREF2 6JHW B A0A0T7L299 518 655 DBREF 6JHW C 1 117 PDB 6JHW 6JHW 1 117 DBREF1 6JHW D 518 655 UNP A0A0T7L299_NEIME DBREF2 6JHW D A0A0T7L299 518 655 SEQADV 6JHW GLY B 517 UNP A0A0T7L29 EXPRESSION TAG SEQADV 6JHW GLY D 517 UNP A0A0T7L29 EXPRESSION TAG SEQRES 1 A 117 MET ALA PHE LYS ARG ALA ILE ILE PHE THR SER PHE ASN SEQRES 2 A 117 GLY PHE GLU LYS VAL SER ARG THR GLU LYS ARG ARG LEU SEQRES 3 A 117 ALA LYS ILE ILE ASN ALA ARG VAL SER ILE ILE ASP GLU SEQRES 4 A 117 TYR LEU ARG ALA LYS ASP THR ASN ALA SER LEU ASP GLY SEQRES 5 A 117 GLN TYR ARG ALA PHE LEU PHE ASN ASP GLU SER PRO ALA SEQRES 6 A 117 MET THR GLU PHE LEU ALA LYS LEU LYS ALA PHE ALA GLU SEQRES 7 A 117 SER CYS THR GLY ILE SER ILE ASP ALA TRP GLU ILE GLU SEQRES 8 A 117 GLU SER GLU TYR VAL ARG LEU PRO VAL GLU ARG ARG ASP SEQRES 9 A 117 PHE LEU ALA ALA ALA ASN GLY LYS GLU ILE PHE LYS ILE SEQRES 1 B 139 GLY GLU ILE GLU LYS ARG GLN GLU GLU ASN ARG LYS ASP SEQRES 2 B 139 ARG GLU LYS ALA ALA ALA LYS PHE ARG GLU TYR PHE PRO SEQRES 3 B 139 ASN PHE VAL GLY GLU PRO LYS SER LYS ASP ILE LEU LYS SEQRES 4 B 139 LEU ARG LEU TYR GLU GLN GLN HIS GLY LYS CYS LEU TYR SEQRES 5 B 139 SER GLY LYS GLU ILE ASN LEU GLY ARG LEU ASN GLU LYS SEQRES 6 B 139 GLY TYR VAL GLU ILE ASP HIS ALA LEU PRO PHE SER ARG SEQRES 7 B 139 THR TRP ASP ASP SER PHE ASN ASN LYS VAL LEU VAL LEU SEQRES 8 B 139 GLY SER GLU ASN GLN ASN LYS GLY ASN GLN THR PRO TYR SEQRES 9 B 139 GLU TYR PHE ASN GLY LYS ASP ASN SER ARG GLU TRP GLN SEQRES 10 B 139 GLU PHE LYS ALA ARG VAL GLU THR SER ARG PHE PRO ARG SEQRES 11 B 139 SER LYS LYS GLN ARG ILE LEU LEU GLN SEQRES 1 C 117 MET ALA PHE LYS ARG ALA ILE ILE PHE THR SER PHE ASN SEQRES 2 C 117 GLY PHE GLU LYS VAL SER ARG THR GLU LYS ARG ARG LEU SEQRES 3 C 117 ALA LYS ILE ILE ASN ALA ARG VAL SER ILE ILE ASP GLU SEQRES 4 C 117 TYR LEU ARG ALA LYS ASP THR ASN ALA SER LEU ASP GLY SEQRES 5 C 117 GLN TYR ARG ALA PHE LEU PHE ASN ASP GLU SER PRO ALA SEQRES 6 C 117 MET THR GLU PHE LEU ALA LYS LEU LYS ALA PHE ALA GLU SEQRES 7 C 117 SER CYS THR GLY ILE SER ILE ASP ALA TRP GLU ILE GLU SEQRES 8 C 117 GLU SER GLU TYR VAL ARG LEU PRO VAL GLU ARG ARG ASP SEQRES 9 C 117 PHE LEU ALA ALA ALA ASN GLY LYS GLU ILE PHE LYS ILE SEQRES 1 D 139 GLY GLU ILE GLU LYS ARG GLN GLU GLU ASN ARG LYS ASP SEQRES 2 D 139 ARG GLU LYS ALA ALA ALA LYS PHE ARG GLU TYR PHE PRO SEQRES 3 D 139 ASN PHE VAL GLY GLU PRO LYS SER LYS ASP ILE LEU LYS SEQRES 4 D 139 LEU ARG LEU TYR GLU GLN GLN HIS GLY LYS CYS LEU TYR SEQRES 5 D 139 SER GLY LYS GLU ILE ASN LEU GLY ARG LEU ASN GLU LYS SEQRES 6 D 139 GLY TYR VAL GLU ILE ASP HIS ALA LEU PRO PHE SER ARG SEQRES 7 D 139 THR TRP ASP ASP SER PHE ASN ASN LYS VAL LEU VAL LEU SEQRES 8 D 139 GLY SER GLU ASN GLN ASN LYS GLY ASN GLN THR PRO TYR SEQRES 9 D 139 GLU TYR PHE ASN GLY LYS ASP ASN SER ARG GLU TRP GLN SEQRES 10 D 139 GLU PHE LYS ALA ARG VAL GLU THR SER ARG PHE PRO ARG SEQRES 11 D 139 SER LYS LYS GLN ARG ILE LEU LEU GLN FORMUL 5 HOH *73(H2 O) HELIX 1 AA1 SER A 19 ALA A 32 1 14 HELIX 2 AA2 ARG A 33 VAL A 34 5 2 HELIX 3 AA3 SER A 35 ARG A 42 5 8 HELIX 4 AA4 THR A 46 ASP A 51 1 6 HELIX 5 AA5 PRO A 64 CYS A 80 1 17 HELIX 6 AA6 GLU A 92 VAL A 96 1 5 HELIX 7 AA7 ARG A 102 GLY A 111 1 10 HELIX 8 AA8 GLU B 518 PHE B 541 1 24 HELIX 9 AA9 LYS B 549 GLN B 562 1 14 HELIX 10 AB1 ASN B 574 LEU B 578 5 5 HELIX 11 AB2 SER B 609 ASN B 611 5 3 HELIX 12 AB3 THR B 618 PHE B 623 1 6 HELIX 13 AB4 SER B 629 SER B 642 1 14 HELIX 14 AB5 PRO B 645 LEU B 653 1 9 HELIX 15 AB6 SER C 19 ARG C 33 1 15 HELIX 16 AB7 VAL C 34 ARG C 42 5 9 HELIX 17 AB8 THR C 46 ASP C 51 1 6 HELIX 18 AB9 PRO C 64 CYS C 80 1 17 HELIX 19 AC1 GLU C 92 LEU C 98 1 7 HELIX 20 AC2 ARG C 102 GLY C 111 1 10 HELIX 21 AC3 GLU D 518 PHE D 541 1 24 HELIX 22 AC4 LYS D 549 GLN D 562 1 14 HELIX 23 AC5 ASN D 574 LEU D 578 5 5 HELIX 24 AC6 SER D 609 ASN D 611 5 3 HELIX 25 AC7 THR D 618 PHE D 623 1 6 HELIX 26 AC8 SER D 629 THR D 641 1 13 HELIX 27 AC9 PRO D 645 LEU D 653 1 9 SHEET 1 AA1 4 GLN A 53 ASN A 60 0 SHEET 2 AA1 4 PHE A 3 PHE A 12 -1 N ALA A 6 O PHE A 57 SHEET 3 AA1 4 ILE A 83 GLU A 91 -1 O TRP A 88 N ILE A 7 SHEET 4 AA1 4 LYS A 112 ILE A 117 -1 O ILE A 114 N ALA A 87 SHEET 1 AA2 2 VAL B 584 HIS B 588 0 SHEET 2 AA2 2 LYS B 603 LEU B 607 -1 O VAL B 606 N GLU B 585 SHEET 1 AA3 4 GLN C 53 ASN C 60 0 SHEET 2 AA3 4 PHE C 3 PHE C 12 -1 N LYS C 4 O PHE C 59 SHEET 3 AA3 4 ILE C 83 GLU C 91 -1 O TRP C 88 N ILE C 7 SHEET 4 AA3 4 LYS C 112 LYS C 116 -1 O ILE C 114 N ALA C 87 SHEET 1 AA4 2 VAL D 584 HIS D 588 0 SHEET 2 AA4 2 LYS D 603 LEU D 607 -1 O VAL D 606 N GLU D 585 CRYST1 53.821 53.821 163.363 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018580 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006121 0.00000