HEADER HYDROLASE 20-FEB-19 6JIA TITLE MARINE BACTERIAL LAMINARINASE MUTANT E135A COMPLEX WITH TITLE 2 LAMINARITETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMCAT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIMARINA; SOURCE 3 ORGANISM_TAXID: 290174; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.JIAN,X.YUQUN,T.MIYAKAWA,M.TANOKURA,L.LIJUAN REVDAT 1 15-MAY-19 6JIA 0 JRNL AUTH Y.JIAN,X.YUQUN,T.MIYAKAWA,M.TANOKURA,L.LIJUAN JRNL TITL MARINE BACTERIAL LAMINARINASE MUTANT E135A COMPLEX WITH JRNL TITL 2 LAMINARITETRAOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1854 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.26000 REMARK 3 B22 (A**2) : 2.36000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1964 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1679 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2682 ; 1.872 ; 1.904 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3837 ; 0.965 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 7.469 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;36.427 ;24.356 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 282 ;12.482 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.085 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.241 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2253 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 517 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 925 ; 2.098 ; 2.248 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 924 ; 2.087 ; 2.247 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1155 ; 2.851 ; 3.363 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1156 ; 2.851 ; 3.365 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1039 ; 3.305 ; 2.541 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 992 ; 3.090 ; 2.487 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1456 ; 4.254 ; 3.637 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8970 ; 6.142 ;22.666 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8614 ; 5.649 ;22.087 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JIA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18576 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4CRQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% (V/V) ETHONAL, 28% PEG20000 100 MM REMARK 280 MES PH7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.43150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.72800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.43150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.72800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.19050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.43150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.72800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.19050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.43150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.72800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 631 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 642 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 GLN A 21 REMARK 465 THR A 253 REMARK 465 ASP A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 137 O HOH A 401 1.82 REMARK 500 O HOH A 438 O HOH A 579 2.04 REMARK 500 O2 Z6H A 302 O3 ALL A 303 2.08 REMARK 500 O HOH A 501 O HOH A 653 2.12 REMARK 500 O HOH A 516 O HOH A 609 2.13 REMARK 500 O HOH A 446 O HOH A 546 2.14 REMARK 500 O HOH A 541 O HOH A 542 2.15 REMARK 500 O HOH A 507 O HOH A 614 2.15 REMARK 500 O1 GLC A 305 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 571 O HOH A 608 6555 2.05 REMARK 500 O HOH A 406 O HOH A 584 3654 2.11 REMARK 500 O HOH A 632 O HOH A 632 4555 2.14 REMARK 500 O HOH A 463 O HOH A 511 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 86 -166.70 -169.58 REMARK 500 ARG A 94 -50.97 -122.32 REMARK 500 TYR A 99 154.04 66.80 REMARK 500 TRP A 115 72.76 -155.93 REMARK 500 ASN A 143 -132.64 58.19 REMARK 500 ALA A 146 39.04 -91.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 656 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 30 O REMARK 620 2 GLY A 68 O 88.4 REMARK 620 3 ASP A 245 O 87.0 102.4 REMARK 620 4 ASP A 245 OD1 162.1 96.3 75.1 REMARK 620 5 HOH A 414 O 95.6 168.4 88.7 83.2 REMARK 620 6 HOH A 571 O 130.9 93.3 139.6 66.2 75.9 REMARK 620 7 HOH A 608 O 87.2 96.1 160.4 109.3 73.2 43.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Poly-Saccharide residues Z6H A REMARK 800 302 through GLC A 305 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS PROTEIN IS E135A MUTANT. DBREF 6JIA A 20 262 PDB 6JIA 6JIA 20 262 SEQRES 1 A 243 MET GLN ASN TRP THR LEU VAL TRP GLN ASP GLU PHE THR SEQRES 2 A 243 ASN GLY ILE SER SER ASP TRP VAL PHE GLU THR GLY ASN SEQRES 3 A 243 GLY ASN SER GLY TRP GLY ASN ASN GLU LEU GLN TYR TYR SEQRES 4 A 243 ARG ARG GLU ASN ALA THR VAL GLU ASN GLY ASN LEU VAL SEQRES 5 A 243 ILE THR ALA LYS ARG GLU SER ILE GLY GLY TYR ASN TYR SEQRES 6 A 243 THR SER THR ARG MET LYS THR GLN GLY ARG LYS SER TRP SEQRES 7 A 243 LYS TYR GLY LYS VAL GLU ALA ARG ILE ALA MET PRO SER SEQRES 8 A 243 PHE MET GLY SER TRP PRO ALA PHE TRP MET LEU GLY ASP SEQRES 9 A 243 ASN ILE SER SER VAL GLY TRP PRO ALA CYS GLY ALA ILE SEQRES 10 A 243 ASP ILE MET GLU HIS VAL ASN THR GLU ALA GLN THR HIS SEQRES 11 A 243 GLY THR ILE HIS TRP GLN ASP HIS ASN ASN THR TYR ALA SEQRES 12 A 243 ASN TYR SER GLY SER ILE PRO VAL SER SER VAL THR SER SEQRES 13 A 243 TYR HIS ILE TYR THR ILE GLU TRP ASP ALA SER VAL ILE SEQRES 14 A 243 LYS TRP PHE VAL ASP GLY ASN LEU TYR HIS GLU ALA SER SEQRES 15 A 243 ILE ALA ASN GLY VAL ASN GLY THR SER GLU PHE HIS ASN SEQRES 16 A 243 ASN PHE PHE ILE LEU LEU ASN MET ALA ILE GLY GLY ASN SEQRES 17 A 243 TRP PRO GLY PHE ASN ILE ASP ASN ASN ALA PHE PRO ALA SEQRES 18 A 243 ARG MET LEU VAL ASP TYR VAL ARG VAL TYR GLN LYS THR SEQRES 19 A 243 ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CA A 301 1 HET Z6H A 302 11 HET ALL A 303 11 HET BGC A 304 11 HET GLC A 305 12 HETNAM CA CALCIUM ION HETNAM Z6H ALPHA-L-ALTROPYRANOSE HETNAM ALL D-ALLOPYRANOSE HETNAM BGC BETA-D-GLUCOSE HETNAM GLC ALPHA-D-GLUCOSE FORMUL 2 CA CA 2+ FORMUL 3 Z6H C6 H12 O6 FORMUL 4 ALL C6 H12 O6 FORMUL 5 BGC C6 H12 O6 FORMUL 5 GLC C6 H12 O6 FORMUL 6 HOH *256(H2 O) HELIX 1 AA1 ASN A 124 GLY A 129 1 6 HELIX 2 AA2 ALA A 203 ASN A 214 5 12 HELIX 3 AA3 ASP A 234 PHE A 238 5 5 SHEET 1 AA1 4 THR A 24 ASP A 29 0 SHEET 2 AA1 4 ALA A 240 GLN A 251 -1 O VAL A 249 N VAL A 26 SHEET 3 AA1 4 ASN A 69 ILE A 79 -1 N ILE A 72 O MET A 242 SHEET 4 AA1 4 ALA A 63 GLU A 66 -1 N THR A 64 O VAL A 71 SHEET 1 AA2 8 GLN A 56 TYR A 58 0 SHEET 2 AA2 8 TYR A 82 SER A 86 1 O TYR A 84 N TYR A 57 SHEET 3 AA2 8 ASN A 69 ILE A 79 -1 N ILE A 79 O TYR A 82 SHEET 4 AA2 8 ALA A 240 GLN A 251 -1 O MET A 242 N ILE A 72 SHEET 5 AA2 8 GLY A 100 ALA A 107 -1 N ALA A 107 O LEU A 243 SHEET 6 AA2 8 HIS A 177 TRP A 183 -1 O TRP A 183 N GLY A 100 SHEET 7 AA2 8 VAL A 187 VAL A 192 -1 O LYS A 189 N GLU A 182 SHEET 8 AA2 8 ASN A 195 SER A 201 -1 O HIS A 198 N TRP A 190 SHEET 1 AA3 7 VAL A 40 PHE A 41 0 SHEET 2 AA3 7 ARG A 88 LYS A 90 -1 O LYS A 90 N VAL A 40 SHEET 3 AA3 7 PHE A 216 ILE A 224 -1 O LEU A 220 N MET A 89 SHEET 4 AA3 7 SER A 114 GLY A 122 -1 N TRP A 119 O LEU A 219 SHEET 5 AA3 7 ALA A 135 GLU A 140 -1 O MET A 139 N PHE A 118 SHEET 6 AA3 7 GLN A 147 GLN A 155 -1 O THR A 151 N ASP A 137 SHEET 7 AA3 7 TYR A 161 PRO A 169 -1 O ALA A 162 N TRP A 154 LINK O GLU A 30 CA CA A 301 1555 1555 2.40 LINK O GLY A 68 CA CA A 301 1555 1555 2.19 LINK O ASP A 245 CA CA A 301 1555 1555 2.31 LINK OD1 ASP A 245 CA CA A 301 1555 1555 2.66 LINK CA CA A 301 O HOH A 414 1555 1555 2.57 LINK CA CA A 301 O HOH A 571 1555 1555 2.84 LINK C1 Z6H A 302 O3 ALL A 303 1555 1555 1.33 LINK C1 ALL A 303 O3 BGC A 304 1555 1555 1.43 LINK C1 BGC A 304 O3 GLC A 305 1555 1555 1.43 LINK CA CA A 301 O HOH A 608 1555 6555 2.64 CISPEP 1 TRP A 130 PRO A 131 0 5.74 CISPEP 2 PHE A 238 PRO A 239 0 2.35 SITE 1 AC1 6 GLU A 30 GLY A 68 ASP A 245 HOH A 414 SITE 2 AC1 6 HOH A 571 HOH A 608 SITE 1 AC2 22 GLY A 51 ASN A 52 ARG A 88 TRP A 115 SITE 2 AC2 22 ALA A 117 TRP A 119 TRP A 130 ASP A 137 SITE 3 AC2 22 GLU A 140 HIS A 153 HOH A 401 HOH A 402 SITE 4 AC2 22 HOH A 403 HOH A 429 HOH A 451 HOH A 454 SITE 5 AC2 22 HOH A 466 HOH A 473 HOH A 475 HOH A 506 SITE 6 AC2 22 HOH A 516 HOH A 525 CRYST1 66.863 95.456 72.381 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013816 0.00000