HEADER ISOMERASE 23-FEB-19 6JIS TITLE CRYSTAL STRUCTURE OF THE HISTIDINE RACEMASE CNTK IN COBALT AND NICKEL TITLE 2 TRANSPORTER SYSTEM OF STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELATE EPIMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTIDINE RACEMASE CNTK; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: CNTK, DAPF, D5R87_08325, D5R88_09755, M1K003_1013; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTIDINE RACEMASE, COBALT AND NICKEL TRANSPORTER SYSTEM, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LUO,Y.JU,H.ZHOU REVDAT 2 22-NOV-23 6JIS 1 LINK REVDAT 1 16-OCT-19 6JIS 0 JRNL AUTH S.LUO,Y.JU,J.ZHOU,Q.GU,J.XU,H.ZHOU JRNL TITL CRYSTAL STRUCTURE OF CNTK, THE COFACTOR-INDEPENDENT JRNL TITL 2 HISTIDINE RACEMASE IN STAPHYLOPINE-MEDIATED METAL JRNL TITL 3 ACQUISITION OF STAPHYLOCOCCUS AUREUS. JRNL REF INT.J.BIOL.MACROMOL. V. 135 725 2019 JRNL REFN ISSN 0141-8130 JRNL PMID 31129210 JRNL DOI 10.1016/J.IJBIOMAC.2019.05.169 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 24057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1245 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2029 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.57000 REMARK 3 B22 (A**2) : -1.65000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2113 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1841 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2867 ; 1.405 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4271 ; 1.353 ; 1.560 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 6.898 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;36.714 ;23.838 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 330 ;12.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;21.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2381 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 434 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1060 ; 1.726 ; 2.206 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1059 ; 1.726 ; 2.205 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1325 ; 2.697 ; 3.301 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1326 ; 2.696 ; 3.301 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 2.271 ; 2.484 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1054 ; 2.270 ; 2.484 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1543 ; 3.550 ; 3.611 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2360 ; 5.736 ;27.861 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2321 ; 5.593 ;27.538 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1300011192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25303 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 32.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6JIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 6.5, 25% PEG 3350., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.42500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.18700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.42500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.18700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -474.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -33.75550 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.93400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 SER A 53 REMARK 465 THR A 54 REMARK 465 GLN A 55 REMARK 465 ASN A 56 REMARK 465 ASP A 57 REMARK 465 ASP A 58 REMARK 465 GLU A 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 138 NZ REMARK 470 GLU A 145 OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 LYS A 179 CD CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 ILE A 206 CG1 CG2 CD1 REMARK 470 ARG A 226 NH1 NH2 REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 LYS A 231 CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 42 -148.49 -136.32 REMARK 500 CYS A 44 130.33 76.31 REMARK 500 ASN A 227 18.96 56.03 REMARK 500 CYS A 249 64.53 -111.76 REMARK 500 HIS A 250 -132.14 46.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 310 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 26 OD1 REMARK 620 2 HOH A 511 O 85.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 313 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 38 O REMARK 620 2 CYS A 45 O 72.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 312 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 HOH A 410 O 62.2 REMARK 620 3 HOH A 454 O 90.8 147.3 REMARK 620 4 HOH A 457 O 142.6 81.7 126.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 311 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 170 O REMARK 620 2 ARG A 170 O 0.3 REMARK 620 3 GLN A 172 O 85.4 85.2 REMARK 620 4 TYR A 198 OH 101.2 101.4 142.6 REMARK 620 5 HOH A 529 O 67.1 67.0 61.7 154.4 REMARK 620 6 HOH A 568 O 161.4 161.2 80.7 97.3 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 314 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 172 OE1 REMARK 620 2 GLN A 173 O 93.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 309 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 231 O REMARK 620 2 ASP A 232 O 62.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 308 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 232 O REMARK 620 2 THR A 234 OG1 89.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS A 314 DBREF1 6JIS A 1 273 UNP A0A389TBD7_STAAU DBREF2 6JIS A A0A389TBD7 1 273 SEQADV 6JIS MET A -13 UNP A0A389TBD INITIATING METHIONINE SEQADV 6JIS GLY A -12 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS SER A -11 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS SER A -10 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS HIS A -9 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS HIS A -8 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS HIS A -7 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS HIS A -6 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS HIS A -5 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS HIS A -4 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS SER A -3 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS SER A -2 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS GLY A -1 UNP A0A389TBD EXPRESSION TAG SEQADV 6JIS HIS A 0 UNP A0A389TBD EXPRESSION TAG SEQRES 1 A 287 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 287 HIS MET ASN ARG GLN VAL ILE GLU PHE SER LYS TYR ASN SEQRES 3 A 287 PRO SER GLY ASN MET THR ILE LEU VAL HIS SER LYS HIS SEQRES 4 A 287 ASP ALA SER GLU TYR ALA SER ILE ALA ASN GLN LEU MET SEQRES 5 A 287 ALA ALA THR HIS VAL CYS CYS GLU GLN VAL GLY PHE ILE SEQRES 6 A 287 GLU SER THR GLN ASN ASP ASP GLY ASN ASP PHE HIS LEU SEQRES 7 A 287 VAL MET SER GLY ASN GLU PHE CYS GLY ASN ALA THR MET SEQRES 8 A 287 SER TYR ILE HIS HIS LEU GLN GLU SER HIS LEU LEU LYS SEQRES 9 A 287 ASP GLN GLN PHE LYS VAL LYS VAL SER GLY CYS SER ASP SEQRES 10 A 287 LEU VAL GLN CYS ALA ILE HIS ASP CYS GLN TYR TYR GLU SEQRES 11 A 287 VAL GLN MET PRO GLN ALA HIS ARG VAL VAL PRO THR THR SEQRES 12 A 287 ILE ASN MET GLY ASN HIS SER TRP LYS ALA LEU GLU ILE SEQRES 13 A 287 ILE TYR GLU THR TYR VAL HIS TYR VAL ILE PRO VAL LYS SEQRES 14 A 287 GLN VAL THR THR GLU ILE GLN HIS LEU VAL GLU ALA PHE SEQRES 15 A 287 VAL ARG GLU GLN GLN TRP SER HIS LYS TYR LYS THR VAL SEQRES 16 A 287 GLY MET MET LEU PHE ASP GLU GLN ARG GLN PHE LEU GLN SEQRES 17 A 287 PRO LEU ILE TYR ILE PRO GLU ILE GLN SER LEU ILE TRP SEQRES 18 A 287 GLU ASN SER CYS GLY SER GLY THR ALA SER ILE GLY VAL SEQRES 19 A 287 PHE ASN ASN TYR GLN ARG ASN ASP ALA CYS LYS ASP PHE SEQRES 20 A 287 THR VAL HIS GLN PRO GLY GLY SER ILE LEU VAL THR SER SEQRES 21 A 287 LYS ARG CYS HIS GLN LEU GLY TYR GLN THR SER ILE LYS SEQRES 22 A 287 GLY GLN VAL THR THR VAL ALA THR GLY LYS ALA TYR ILE SEQRES 23 A 287 GLU HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET CS A 308 1 HET CS A 309 1 HET CS A 310 1 HET CS A 311 1 HET CS A 312 1 HET CS A 313 1 HET CS A 314 1 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CS CESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CL 3(CL 1-) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 CS 7(CS 1+) FORMUL 16 HOH *194(H2 O) HELIX 1 AA1 ASP A 26 SER A 28 5 3 HELIX 2 AA2 GLU A 29 ALA A 39 1 11 HELIX 3 AA3 CYS A 72 LEU A 88 1 17 HELIX 4 AA4 ASP A 111 GLN A 113 5 3 HELIX 5 AA5 THR A 158 GLN A 172 1 15 HELIX 6 AA6 CYS A 211 ASN A 227 1 17 HELIX 7 AA7 HIS A 250 LEU A 252 5 3 SHEET 1 AA111 CYS A 230 GLN A 237 0 SHEET 2 AA111 GLY A 240 ARG A 248 -1 O GLY A 240 N GLN A 237 SHEET 3 AA111 TYR A 254 GLY A 260 -1 O SER A 257 N THR A 245 SHEET 4 AA111 TYR A 114 GLN A 118 -1 N VAL A 117 O ILE A 258 SHEET 5 AA111 VAL A 105 HIS A 110 -1 N HIS A 110 O TYR A 114 SHEET 6 AA111 GLN A 92 VAL A 98 -1 N VAL A 96 O VAL A 105 SHEET 7 AA111 HIS A 63 MET A 66 1 N LEU A 64 O LYS A 97 SHEET 8 AA111 GLN A 47 ILE A 51 -1 N PHE A 50 O VAL A 65 SHEET 9 AA111 THR A 18 VAL A 21 1 N VAL A 21 O GLY A 49 SHEET 10 AA111 VAL A 5 ASN A 12 -1 N TYR A 11 O THR A 18 SHEET 11 AA111 THR A 263 TYR A 271 -1 O ALA A 270 N ILE A 6 SHEET 1 AA2 6 ARG A 124 MET A 132 0 SHEET 2 AA2 6 HIS A 135 ILE A 143 -1 O GLU A 141 N VAL A 126 SHEET 3 AA2 6 TYR A 147 PRO A 153 -1 O HIS A 149 N ILE A 142 SHEET 4 AA2 6 THR A 180 ASP A 187 1 O MET A 184 N TYR A 150 SHEET 5 AA2 6 PHE A 192 ILE A 199 -1 O PHE A 192 N ASP A 187 SHEET 6 AA2 6 SER A 204 TRP A 207 -1 O ILE A 206 N ILE A 197 LINK OD1 ASP A 26 CS CS A 310 1555 1555 3.24 LINK O MET A 38 CS CS A 313 1555 1555 2.86 LINK O CYS A 45 CS CS A 313 1555 1555 3.06 LINK OE2 GLU A 70 CS CS A 312 1555 1555 3.25 LINK O AARG A 170 CS CS A 311 1555 1555 3.16 LINK O BARG A 170 CS CS A 311 1555 1555 3.14 LINK O GLN A 172 CS CS A 311 1555 1555 2.89 LINK OE1 GLN A 172 CS CS A 314 1555 1555 2.80 LINK O GLN A 173 CS CS A 314 1555 1555 2.83 LINK OH TYR A 198 CS CS A 311 1555 1555 2.85 LINK O LYS A 231 CS CS A 309 1555 1555 3.05 LINK O ASP A 232 CS CS A 308 1555 1555 2.99 LINK O ASP A 232 CS CS A 309 1555 1555 3.12 LINK OG1 THR A 234 CS CS A 308 1555 1555 3.04 LINK CS CS A 310 O HOH A 511 1555 1555 3.21 LINK CS CS A 311 O HOH A 529 1555 1555 3.04 LINK CS CS A 311 O HOH A 568 1555 1555 3.37 LINK CS CS A 312 O HOH A 410 1555 1555 3.30 LINK CS CS A 312 O HOH A 454 1555 1555 3.44 LINK CS CS A 312 O HOH A 457 1555 1555 2.95 SITE 1 AC1 3 SER A 175 TYR A 178 CS A 314 SITE 1 AC2 2 SER A 28 VAL A 157 SITE 1 AC3 2 ILE A 202 GLN A 203 SITE 1 AC4 4 HIS A 81 GLN A 113 VAL A 262 HOH A 471 SITE 1 AC5 5 GLN A 93 GLN A 106 GLN A 118 EDO A 307 SITE 2 AC5 5 HOH A 480 SITE 1 AC6 3 GLY A 100 SER A 102 HOH A 409 SITE 1 AC7 3 GLU A 116 PRO A 127 EDO A 305 SITE 1 AC8 2 ASP A 232 THR A 234 SITE 1 AC9 2 LYS A 231 ASP A 232 SITE 1 AD1 1 ASP A 26 SITE 1 AD2 5 VAL A 169 ARG A 170 GLN A 172 TYR A 198 SITE 2 AD2 5 HOH A 529 SITE 1 AD3 3 GLU A 70 TYR A 147 HOH A 457 SITE 1 AD4 2 MET A 38 CYS A 45 SITE 1 AD5 4 GLN A 172 GLN A 173 TRP A 174 CL A 301 CRYST1 70.850 60.374 76.755 90.00 116.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014114 0.000000 0.006911 0.00000 SCALE2 0.000000 0.016563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014507 0.00000