HEADER OXIDOREDUCTASE 23-FEB-19 6JIT TITLE COMPLEX STRUCTURE OF AN IMINE REDUCTASE AT 2.05 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE NAD-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STACKEBRANDTIA NASSAUENSIS (STRAIN DSM 44728 / SOURCE 3 NRRL B-16338 / NBRC 102104 / LLR-40K-21); SOURCE 4 ORGANISM_TAXID: 446470; SOURCE 5 STRAIN: DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21; SOURCE 6 GENE: SNAS_4330; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS IMINE REDUCTASES, HIGHLY ACTIVE, STEREOSELECTIVE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.LI,L.WU,G.W.ZHENG,J.H.ZHOU REVDAT 2 22-NOV-23 6JIT 1 REMARK REVDAT 1 26-FEB-20 6JIT 0 JRNL AUTH H.LI,L.WU,G.W.ZHENG,J.H.ZHOU JRNL TITL COMPLEX STRUCTURE OF AN IMINE REDUCTASE AT 2.05 ANGSTROM JRNL TITL 2 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 68047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9639 - 5.9145 0.99 2767 185 0.1569 0.1640 REMARK 3 2 5.9145 - 4.6958 1.00 2762 148 0.1601 0.1600 REMARK 3 3 4.6958 - 4.1026 1.00 2738 129 0.1323 0.1648 REMARK 3 4 4.1026 - 3.7276 1.00 2755 134 0.1467 0.1691 REMARK 3 5 3.7276 - 3.4605 1.00 2765 122 0.1681 0.1935 REMARK 3 6 3.4605 - 3.2566 1.00 2715 143 0.1810 0.2084 REMARK 3 7 3.2566 - 3.0935 1.00 2709 152 0.1935 0.2568 REMARK 3 8 3.0935 - 2.9589 1.00 2726 113 0.1829 0.1927 REMARK 3 9 2.9589 - 2.8450 1.00 2757 111 0.1958 0.2092 REMARK 3 10 2.8450 - 2.7468 1.00 2712 128 0.1890 0.2140 REMARK 3 11 2.7468 - 2.6609 1.00 2695 143 0.1926 0.2377 REMARK 3 12 2.6609 - 2.5849 1.00 2696 156 0.1929 0.2309 REMARK 3 13 2.5849 - 2.5168 1.00 2710 152 0.2008 0.2228 REMARK 3 14 2.5168 - 2.4554 1.00 2693 151 0.2026 0.2336 REMARK 3 15 2.4554 - 2.3996 1.00 2700 122 0.1959 0.2707 REMARK 3 16 2.3996 - 2.3485 1.00 2744 127 0.2036 0.2553 REMARK 3 17 2.3485 - 2.3016 1.00 2689 135 0.2140 0.2844 REMARK 3 18 2.3016 - 2.2581 0.98 2646 133 0.3163 0.3389 REMARK 3 19 2.2581 - 2.2178 0.97 2604 122 0.4417 0.5361 REMARK 3 20 2.2178 - 2.1802 0.99 2692 155 0.2492 0.2961 REMARK 3 21 2.1802 - 2.1450 0.97 2644 134 0.2257 0.2814 REMARK 3 22 2.1450 - 2.1120 0.97 2597 157 0.2179 0.2605 REMARK 3 23 2.1120 - 2.0810 0.98 2653 137 0.2264 0.2830 REMARK 3 24 2.0810 - 2.0517 0.97 2558 131 0.2337 0.2524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6600 REMARK 3 ANGLE : 0.567 9020 REMARK 3 CHIRALITY : 0.042 1074 REMARK 3 PLANARITY : 0.004 1148 REMARK 3 DIHEDRAL : 15.779 3947 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.23400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.77100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6JIZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5M AMMONIUM ACETATE, 0.1M TRIS-HCL PH REMARK 280 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.11433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.22867 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 112.22867 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.11433 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -53.29900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -92.31658 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -56.11433 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 ALA A 125 REMARK 465 PRO A 126 REMARK 465 THR A 127 REMARK 465 VAL A 128 REMARK 465 GLY A 129 REMARK 465 THR A 130 REMARK 465 GLU A 131 REMARK 465 ALA A 132 REMARK 465 ALA A 219 REMARK 465 GLU A 220 REMARK 465 ALA A 221 REMARK 465 ALA A 299 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 125 REMARK 465 PRO B 126 REMARK 465 THR B 127 REMARK 465 VAL B 128 REMARK 465 GLY B 129 REMARK 465 THR B 130 REMARK 465 GLU B 131 REMARK 465 ALA B 299 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 SER C 3 REMARK 465 THR C 223 REMARK 465 GLY C 224 REMARK 465 LEU C 225 REMARK 465 ALA C 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 124 CG CD REMARK 470 THR A 223 OG1 CG2 REMARK 470 LEU A 225 CG CD1 CD2 REMARK 470 SER B 96 OG REMARK 470 GLU C 226 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 43 O HOH B 401 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 124 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 40.36 -109.32 REMARK 500 GLU A 239 -119.83 -105.82 REMARK 500 ALA B 241 108.71 -170.35 REMARK 500 LEU C 94 41.63 -103.92 REMARK 500 ASP C 97 -172.84 -170.41 REMARK 500 ALA C 221 62.85 -116.64 REMARK 500 GLU C 239 -92.37 -68.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 581 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH B 582 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 583 DISTANCE = 7.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LW7 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP C 301 DBREF 6JIT A 1 299 UNP D3Q3R0 D3Q3R0_STANL 1 299 DBREF 6JIT B 1 299 UNP D3Q3R0 D3Q3R0_STANL 1 299 DBREF 6JIT C 1 299 UNP D3Q3R0 D3Q3R0_STANL 1 299 SEQADV 6JIT ILE A 123 UNP D3Q3R0 THR 123 ENGINEERED MUTATION SEQADV 6JIT LEU A 178 UNP D3Q3R0 PHE 178 ENGINEERED MUTATION SEQADV 6JIT ALA A 228 UNP D3Q3R0 GLY 228 ENGINEERED MUTATION SEQADV 6JIT ILE B 123 UNP D3Q3R0 THR 123 ENGINEERED MUTATION SEQADV 6JIT LEU B 178 UNP D3Q3R0 PHE 178 ENGINEERED MUTATION SEQADV 6JIT ALA B 228 UNP D3Q3R0 GLY 228 ENGINEERED MUTATION SEQADV 6JIT ILE C 123 UNP D3Q3R0 THR 123 ENGINEERED MUTATION SEQADV 6JIT LEU C 178 UNP D3Q3R0 PHE 178 ENGINEERED MUTATION SEQADV 6JIT ALA C 228 UNP D3Q3R0 GLY 228 ENGINEERED MUTATION SEQRES 1 A 299 MET ASN SER LYS LYS SER PRO VAL THR LEU ILE GLY LEU SEQRES 2 A 299 GLY PRO MET GLY GLN ALA MET VAL ARG THR LEU LEU GLY SEQRES 3 A 299 GLN GLY HIS PRO VAL THR VAL TRP ASN ARG THR PRO SER SEQRES 4 A 299 ARG ALA GLU PRO LEU VAL VAL GLU GLY ALA ARG LEU ALA SEQRES 5 A 299 ALA SER PRO THR GLU ALA VAL ALA SER SER ASP LEU VAL SEQRES 6 A 299 ILE LEU SER LEU THR ASP TYR GLN ALA MET TYR ASP ILE SEQRES 7 A 299 LEU SER THR ALA GLU SER ALA LEU ALA GLY ARG THR ILE SEQRES 8 A 299 VAL ASN LEU SER SER ASP ASP PRO ASP VAL THR ARG GLU SEQRES 9 A 299 ALA ALA LYS TRP ALA ALA LYS HIS GLY ALA THR PHE ILE SEQRES 10 A 299 ALA GLY GLY VAL MET ILE PRO ALA PRO THR VAL GLY THR SEQRES 11 A 299 GLU ALA ALA TYR VAL PHE TYR SER GLY PRO LYS SER ALA SEQRES 12 A 299 PHE ASP ALA HIS GLU PRO VAL LEU ARG HIS ILE GLY GLY SEQRES 13 A 299 PRO ARG PHE LEU GLY GLU ASP THR GLY LEU ALA GLN LEU SEQRES 14 A 299 TYR TYR LEU ALA HIS LEU ASP VAL LEU LEU THR THR LEU SEQRES 15 A 299 ALA SER VAL VAL HIS ALA THR ALA LEU VAL SER ALA ALA SEQRES 16 A 299 GLY VAL ASP GLU ALA ALA PHE ALA PRO GLU ALA ILE ARG SEQRES 17 A 299 MET VAL ILE GLU THR GLY GLN MET LEU ALA ALA GLU ALA SEQRES 18 A 299 GLU THR GLY LEU GLU LEU ALA ARG ASN LEU ALA SER GLY SEQRES 19 A 299 ASN HIS PRO GLY GLU LEU ALA THR ALA VAL MET MET GLY SEQRES 20 A 299 ALA THR ALA ASP HIS ILE VAL SER ALA ALA LYS GLY SER SEQRES 21 A 299 GLY VAL ASP LEU VAL LEU PRO GLU ALA VAL LYS SER LEU SEQRES 22 A 299 TYR ASP ARG THR VAL ALA ALA GLY HIS GLY LYS ASP SER SEQRES 23 A 299 TRP THR ALA MET TYR GLU ILE ILE LYS LYS LYS ALA ALA SEQRES 1 B 299 MET ASN SER LYS LYS SER PRO VAL THR LEU ILE GLY LEU SEQRES 2 B 299 GLY PRO MET GLY GLN ALA MET VAL ARG THR LEU LEU GLY SEQRES 3 B 299 GLN GLY HIS PRO VAL THR VAL TRP ASN ARG THR PRO SER SEQRES 4 B 299 ARG ALA GLU PRO LEU VAL VAL GLU GLY ALA ARG LEU ALA SEQRES 5 B 299 ALA SER PRO THR GLU ALA VAL ALA SER SER ASP LEU VAL SEQRES 6 B 299 ILE LEU SER LEU THR ASP TYR GLN ALA MET TYR ASP ILE SEQRES 7 B 299 LEU SER THR ALA GLU SER ALA LEU ALA GLY ARG THR ILE SEQRES 8 B 299 VAL ASN LEU SER SER ASP ASP PRO ASP VAL THR ARG GLU SEQRES 9 B 299 ALA ALA LYS TRP ALA ALA LYS HIS GLY ALA THR PHE ILE SEQRES 10 B 299 ALA GLY GLY VAL MET ILE PRO ALA PRO THR VAL GLY THR SEQRES 11 B 299 GLU ALA ALA TYR VAL PHE TYR SER GLY PRO LYS SER ALA SEQRES 12 B 299 PHE ASP ALA HIS GLU PRO VAL LEU ARG HIS ILE GLY GLY SEQRES 13 B 299 PRO ARG PHE LEU GLY GLU ASP THR GLY LEU ALA GLN LEU SEQRES 14 B 299 TYR TYR LEU ALA HIS LEU ASP VAL LEU LEU THR THR LEU SEQRES 15 B 299 ALA SER VAL VAL HIS ALA THR ALA LEU VAL SER ALA ALA SEQRES 16 B 299 GLY VAL ASP GLU ALA ALA PHE ALA PRO GLU ALA ILE ARG SEQRES 17 B 299 MET VAL ILE GLU THR GLY GLN MET LEU ALA ALA GLU ALA SEQRES 18 B 299 GLU THR GLY LEU GLU LEU ALA ARG ASN LEU ALA SER GLY SEQRES 19 B 299 ASN HIS PRO GLY GLU LEU ALA THR ALA VAL MET MET GLY SEQRES 20 B 299 ALA THR ALA ASP HIS ILE VAL SER ALA ALA LYS GLY SER SEQRES 21 B 299 GLY VAL ASP LEU VAL LEU PRO GLU ALA VAL LYS SER LEU SEQRES 22 B 299 TYR ASP ARG THR VAL ALA ALA GLY HIS GLY LYS ASP SER SEQRES 23 B 299 TRP THR ALA MET TYR GLU ILE ILE LYS LYS LYS ALA ALA SEQRES 1 C 299 MET ASN SER LYS LYS SER PRO VAL THR LEU ILE GLY LEU SEQRES 2 C 299 GLY PRO MET GLY GLN ALA MET VAL ARG THR LEU LEU GLY SEQRES 3 C 299 GLN GLY HIS PRO VAL THR VAL TRP ASN ARG THR PRO SER SEQRES 4 C 299 ARG ALA GLU PRO LEU VAL VAL GLU GLY ALA ARG LEU ALA SEQRES 5 C 299 ALA SER PRO THR GLU ALA VAL ALA SER SER ASP LEU VAL SEQRES 6 C 299 ILE LEU SER LEU THR ASP TYR GLN ALA MET TYR ASP ILE SEQRES 7 C 299 LEU SER THR ALA GLU SER ALA LEU ALA GLY ARG THR ILE SEQRES 8 C 299 VAL ASN LEU SER SER ASP ASP PRO ASP VAL THR ARG GLU SEQRES 9 C 299 ALA ALA LYS TRP ALA ALA LYS HIS GLY ALA THR PHE ILE SEQRES 10 C 299 ALA GLY GLY VAL MET ILE PRO ALA PRO THR VAL GLY THR SEQRES 11 C 299 GLU ALA ALA TYR VAL PHE TYR SER GLY PRO LYS SER ALA SEQRES 12 C 299 PHE ASP ALA HIS GLU PRO VAL LEU ARG HIS ILE GLY GLY SEQRES 13 C 299 PRO ARG PHE LEU GLY GLU ASP THR GLY LEU ALA GLN LEU SEQRES 14 C 299 TYR TYR LEU ALA HIS LEU ASP VAL LEU LEU THR THR LEU SEQRES 15 C 299 ALA SER VAL VAL HIS ALA THR ALA LEU VAL SER ALA ALA SEQRES 16 C 299 GLY VAL ASP GLU ALA ALA PHE ALA PRO GLU ALA ILE ARG SEQRES 17 C 299 MET VAL ILE GLU THR GLY GLN MET LEU ALA ALA GLU ALA SEQRES 18 C 299 GLU THR GLY LEU GLU LEU ALA ARG ASN LEU ALA SER GLY SEQRES 19 C 299 ASN HIS PRO GLY GLU LEU ALA THR ALA VAL MET MET GLY SEQRES 20 C 299 ALA THR ALA ASP HIS ILE VAL SER ALA ALA LYS GLY SER SEQRES 21 C 299 GLY VAL ASP LEU VAL LEU PRO GLU ALA VAL LYS SER LEU SEQRES 22 C 299 TYR ASP ARG THR VAL ALA ALA GLY HIS GLY LYS ASP SER SEQRES 23 C 299 TRP THR ALA MET TYR GLU ILE ILE LYS LYS LYS ALA ALA HET CL A 301 1 HET LW7 B 301 18 HET NAP C 301 48 HETNAM CL CHLORIDE ION HETNAM LW7 1-(2-PHENYLETHYL)-3,4-DIHYDROISOQUINOLINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 4 CL CL 1- FORMUL 5 LW7 C17 H17 N FORMUL 6 NAP C21 H28 N7 O17 P3 FORMUL 7 HOH *600(H2 O) HELIX 1 AA1 GLY A 14 GLN A 27 1 14 HELIX 2 AA2 THR A 37 ARG A 40 5 4 HELIX 3 AA3 ALA A 41 GLU A 47 1 7 HELIX 4 AA4 SER A 54 SER A 61 1 8 HELIX 5 AA5 ASP A 71 SER A 80 1 10 HELIX 6 AA6 THR A 81 LEU A 86 5 6 HELIX 7 AA7 ASP A 98 HIS A 112 1 15 HELIX 8 AA8 PRO A 140 GLY A 155 1 16 HELIX 9 AA9 GLY A 165 ALA A 194 1 30 HELIX 10 AB1 ASP A 198 LEU A 217 1 20 HELIX 11 AB2 THR A 223 GLY A 234 1 12 HELIX 12 AB3 THR A 242 GLY A 261 1 20 HELIX 13 AB4 LEU A 264 ALA A 280 1 17 HELIX 14 AB5 SER A 286 ALA A 289 5 4 HELIX 15 AB6 MET A 290 LYS A 295 1 6 HELIX 16 AB7 GLY B 14 GLN B 27 1 14 HELIX 17 AB8 THR B 37 VAL B 46 1 10 HELIX 18 AB9 SER B 54 SER B 61 1 8 HELIX 19 AC1 ASP B 71 LEU B 79 1 9 HELIX 20 AC2 SER B 80 LEU B 86 5 7 HELIX 21 AC3 ASP B 98 HIS B 112 1 15 HELIX 22 AC4 PRO B 140 GLY B 155 1 16 HELIX 23 AC5 GLY B 165 ALA B 194 1 30 HELIX 24 AC6 ASP B 198 ALA B 218 1 21 HELIX 25 AC7 ALA B 219 GLY B 224 1 6 HELIX 26 AC8 GLU B 226 GLY B 234 1 9 HELIX 27 AC9 THR B 242 SER B 260 1 19 HELIX 28 AD1 LEU B 264 ALA B 280 1 17 HELIX 29 AD2 SER B 286 ALA B 289 5 4 HELIX 30 AD3 MET B 290 LYS B 295 1 6 HELIX 31 AD4 GLY C 14 GLN C 27 1 14 HELIX 32 AD5 THR C 37 ARG C 40 5 4 HELIX 33 AD6 ALA C 41 GLU C 47 1 7 HELIX 34 AD7 SER C 54 ALA C 60 1 7 HELIX 35 AD8 ASP C 71 SER C 80 1 10 HELIX 36 AD9 THR C 81 LEU C 86 5 6 HELIX 37 AE1 ASP C 98 HIS C 112 1 15 HELIX 38 AE2 PRO C 124 VAL C 128 5 5 HELIX 39 AE3 PRO C 140 ARG C 152 1 13 HELIX 40 AE4 THR C 164 ALA C 194 1 31 HELIX 41 AE5 ASP C 198 GLU C 220 1 23 HELIX 42 AE6 LEU C 227 GLY C 234 1 8 HELIX 43 AE7 THR C 242 SER C 260 1 19 HELIX 44 AE8 LEU C 264 ALA C 280 1 17 HELIX 45 AE9 SER C 286 THR C 288 5 3 HELIX 46 AF1 ALA C 289 LYS C 295 1 7 SHEET 1 AA1 8 ARG A 50 LEU A 51 0 SHEET 2 AA1 8 VAL A 31 TRP A 34 1 N VAL A 33 O ARG A 50 SHEET 3 AA1 8 VAL A 8 ILE A 11 1 N VAL A 8 O THR A 32 SHEET 4 AA1 8 LEU A 64 LEU A 67 1 O ILE A 66 N THR A 9 SHEET 5 AA1 8 THR A 90 ASN A 93 1 O VAL A 92 N VAL A 65 SHEET 6 AA1 8 THR A 115 MET A 122 1 O THR A 115 N ILE A 91 SHEET 7 AA1 8 TYR A 134 SER A 138 -1 O PHE A 136 N GLY A 120 SHEET 8 AA1 8 GLY A 156 GLY A 161 1 O LEU A 160 N TYR A 137 SHEET 1 AA2 8 ARG B 50 LEU B 51 0 SHEET 2 AA2 8 VAL B 31 TRP B 34 1 N VAL B 33 O ARG B 50 SHEET 3 AA2 8 VAL B 8 ILE B 11 1 N VAL B 8 O THR B 32 SHEET 4 AA2 8 LEU B 64 LEU B 67 1 O ILE B 66 N THR B 9 SHEET 5 AA2 8 THR B 90 ASN B 93 1 O VAL B 92 N VAL B 65 SHEET 6 AA2 8 THR B 115 MET B 122 1 O THR B 115 N ILE B 91 SHEET 7 AA2 8 TYR B 134 SER B 138 -1 O TYR B 134 N MET B 122 SHEET 8 AA2 8 PRO B 157 GLY B 161 1 O LEU B 160 N TYR B 137 SHEET 1 AA3 8 ARG C 50 LEU C 51 0 SHEET 2 AA3 8 VAL C 31 TRP C 34 1 N VAL C 33 O ARG C 50 SHEET 3 AA3 8 VAL C 8 ILE C 11 1 N VAL C 8 O THR C 32 SHEET 4 AA3 8 LEU C 64 LEU C 67 1 O ILE C 66 N THR C 9 SHEET 5 AA3 8 THR C 90 ASN C 93 1 O VAL C 92 N VAL C 65 SHEET 6 AA3 8 THR C 115 VAL C 121 1 O THR C 115 N ILE C 91 SHEET 7 AA3 8 TYR C 134 SER C 138 -1 O PHE C 136 N GLY C 120 SHEET 8 AA3 8 GLY C 156 GLY C 161 1 O LEU C 160 N TYR C 137 SITE 1 AC1 2 ARG A 103 HOH A 548 SITE 1 AC2 5 MET B 216 LEU B 217 THR B 223 MET C 122 SITE 2 AC2 5 NAP C 301 SITE 1 AC3 38 LEU B 240 MET B 245 LW7 B 301 GLY C 12 SITE 2 AC3 38 LEU C 13 GLY C 14 PRO C 15 MET C 16 SITE 3 AC3 38 ASN C 35 ARG C 36 THR C 37 ARG C 40 SITE 4 AC3 38 SER C 68 LEU C 69 THR C 70 ALA C 74 SITE 5 AC3 38 ASP C 77 ILE C 78 LEU C 94 SER C 95 SITE 6 AC3 38 SER C 96 VAL C 121 ILE C 123 PRO C 124 SITE 7 AC3 38 TYR C 171 HOH C 416 HOH C 417 HOH C 427 SITE 8 AC3 38 HOH C 439 HOH C 440 HOH C 449 HOH C 477 SITE 9 AC3 38 HOH C 492 HOH C 499 HOH C 502 HOH C 504 SITE 10 AC3 38 HOH C 542 HOH C 544 CRYST1 106.598 106.598 168.343 90.00 90.00 120.00 P 31 1 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009381 0.005416 0.000000 0.00000 SCALE2 0.000000 0.010832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005940 0.00000