data_6JJI # _entry.id 6JJI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JJI pdb_00006jji 10.2210/pdb6jji/pdb WWPDB D_1300011193 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JJI _pdbx_database_status.recvd_initial_deposition_date 2019-02-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Y.S.' 1 0000-0002-4948-6449 'Parkinson, G.N.' 2 0000-0002-1865-9685 'Wei, D.G.' 3 0000-0001-7776-7320 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 48 _citation.language ? _citation.page_first 9886 _citation.page_last 9898 _citation.title 'Native de novo structural determinations of non-canonical nucleic acid motifs by X-ray crystallography at long wavelengths.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaa439 _citation.pdbx_database_id_PubMed 32453431 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.' 1 ? primary 'El Omari, K.' 2 ? primary 'Duman, R.' 3 ? primary 'Liu, S.' 4 ? primary 'Haider, S.' 5 ? primary 'Wagner, A.' 6 ? primary 'Parkinson, G.N.' 7 ? primary 'Wei, D.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6JJI _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.509 _cell.length_a_esd ? _cell.length_b 29.244 _cell.length_b_esd ? _cell.length_c 57.557 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*GP*CP*UP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A)-3') ; 4572.788 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer syn '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' 678.826 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUCGGCGGCGGA _entity_poly.pdbx_seq_one_letter_code_can GGCUCGGCGGCGGA _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 G n 1 7 G n 1 8 C n 1 9 G n 1 10 G n 1 11 C n 1 12 G n 1 13 G n 1 14 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Pseudorabies virus Ea' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 101947 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6JJI _struct_ref.pdbx_db_accession 6JJI _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6JJI _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 14 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6JJI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 14 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 POH non-polymer . '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' TMPyP4 'C44 H38 N8 4' 678.826 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JJI _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.16 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Potassium cacodylate, Sodium cacodylate, Potassium chloride, MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-05-05 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97900 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6JJI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.1 _reflns.d_resolution_low 16.042 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 825 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.57 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.6 _reflns.pdbx_Rmerge_I_obs 0.108 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.1 _reflns_shell.d_res_low 3.21 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 79 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.403 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 166.810 _refine.B_iso_mean 71.0763 _refine.B_iso_min 34.620 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JJI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.1000 _refine.ls_d_res_low 16.0420 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 817 _refine.ls_number_reflns_R_free 36 _refine.ls_number_reflns_R_work 781 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.4900 _refine.ls_percent_reflns_R_free 4.4100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1950 _refine.ls_R_factor_R_free 0.2497 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1927 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.170 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6JJH _refine.pdbx_stereochemistry_target_values LS_WUNIT_K1 _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.9500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1200 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.1000 _refine_hist.d_res_low 16.0420 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 358 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 14 _refine_hist.pdbx_B_iso_mean_ligand 70.59 _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 303 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.1 _refine_ls_shell.d_res_low 3.21 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_R_work 781 _refine_ls_shell.percent_reflns_obs 97.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2497 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.1927 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6JJI _struct.title 'Crystal structure of a two-quartet RNA parallel G-quadruplex complexed with the porphyrin TMPyP4 (1:1)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JJI _struct_keywords.text 'G-quadruplex, two-quartet, complex, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 O6 ? ? ? 1_555 D K . K ? ? B G 1 B K 103 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc2 metalc ? ? A G 1 O6 ? ? ? 1_555 D K . K ? ? B G 1 B K 103 4_555 ? ? ? ? ? ? ? 2.695 ? ? metalc3 metalc ? ? A G 2 O6 ? ? ? 1_555 C K . K ? ? B G 2 B K 102 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc4 metalc ? ? A G 2 O6 ? ? ? 1_555 C K . K ? ? B G 2 B K 102 4_555 ? ? ? ? ? ? ? 2.758 ? ? metalc5 metalc ? ? A G 2 O6 ? ? ? 1_555 D K . K ? ? B G 2 B K 103 1_555 ? ? ? ? ? ? ? 2.607 ? ? metalc6 metalc ? ? A G 2 O6 ? ? ? 1_555 D K . K ? ? B G 2 B K 103 4_555 ? ? ? ? ? ? ? 2.916 ? ? metalc7 metalc ? ? A G 6 O6 ? ? ? 1_555 D K . K ? ? B G 6 B K 103 1_555 ? ? ? ? ? ? ? 2.471 ? ? metalc8 metalc ? ? A G 6 O6 ? ? ? 1_555 D K . K ? ? B G 6 B K 103 4_555 ? ? ? ? ? ? ? 2.730 ? ? metalc9 metalc ? ? A G 7 O6 ? ? ? 1_555 C K . K ? ? B G 7 B K 102 1_555 ? ? ? ? ? ? ? 2.698 ? ? metalc10 metalc ? ? A G 7 O6 ? ? ? 1_555 C K . K ? ? B G 7 B K 102 4_555 ? ? ? ? ? ? ? 2.826 ? ? metalc11 metalc ? ? A G 7 O6 ? ? ? 1_555 D K . K ? ? B G 7 B K 103 1_555 ? ? ? ? ? ? ? 2.711 ? ? metalc12 metalc ? ? A G 7 O6 ? ? ? 1_555 D K . K ? ? B G 7 B K 103 4_555 ? ? ? ? ? ? ? 2.795 ? ? metalc13 metalc ? ? A G 9 O6 ? ? ? 1_555 B K . K ? ? B G 9 B K 101 1_555 ? ? ? ? ? ? ? 2.939 ? ? metalc14 metalc ? ? A G 9 O6 ? ? ? 1_555 B K . K ? ? B G 9 B K 101 4_555 ? ? ? ? ? ? ? 2.992 ? ? metalc15 metalc ? ? A G 9 O6 ? ? ? 1_555 C K . K ? ? B G 9 B K 102 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc16 metalc ? ? A G 9 O6 ? ? ? 1_555 C K . K ? ? B G 9 B K 102 4_555 ? ? ? ? ? ? ? 2.733 ? ? metalc17 metalc ? ? A G 10 O6 ? ? ? 1_555 B K . K ? ? B G 10 B K 101 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc18 metalc ? ? A G 10 O6 ? ? ? 1_555 B K . K ? ? B G 10 B K 101 4_555 ? ? ? ? ? ? ? 2.816 ? ? metalc19 metalc ? ? A G 12 O6 ? ? ? 1_555 B K . K ? ? B G 12 B K 101 1_555 ? ? ? ? ? ? ? 2.945 ? ? metalc20 metalc ? ? A G 12 O6 ? ? ? 1_555 B K . K ? ? B G 12 B K 101 4_555 ? ? ? ? ? ? ? 3.045 ? ? metalc21 metalc ? ? A G 12 O6 ? ? ? 1_555 C K . K ? ? B G 12 B K 102 1_555 ? ? ? ? ? ? ? 2.670 ? ? metalc22 metalc ? ? A G 12 O6 ? ? ? 1_555 C K . K ? ? B G 12 B K 102 4_555 ? ? ? ? ? ? ? 2.828 ? ? metalc23 metalc ? ? A G 13 O6 ? ? ? 1_555 B K . K ? ? B G 13 B K 101 1_555 ? ? ? ? ? ? ? 2.820 ? ? metalc24 metalc ? ? A G 13 O6 ? ? ? 1_555 B K . K ? ? B G 13 B K 101 4_555 ? ? ? ? ? ? ? 2.896 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A G 6 O6 ? ? B G 1 B G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A G 6 N7 ? ? B G 1 B G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A G 7 O6 ? ? B G 2 B G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A G 7 N7 ? ? B G 2 B G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 12 O6 ? ? B G 9 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 12 N7 ? ? B G 9 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 13 O6 ? ? B G 10 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 13 N7 ? ? B G 10 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B K 101 ? 10 'binding site for residue K B 101' AC2 Software B K 102 ? 12 'binding site for residue K B 102' AC3 Software B K 103 ? 10 'binding site for residue K B 103' AC4 Software B POH 104 ? 8 'binding site for residue POH B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 G A 9 ? G B 9 . ? 1_555 ? 2 AC1 10 G A 9 ? G B 9 . ? 4_555 ? 3 AC1 10 G A 10 ? G B 10 . ? 4_555 ? 4 AC1 10 G A 10 ? G B 10 . ? 1_555 ? 5 AC1 10 G A 12 ? G B 12 . ? 1_555 ? 6 AC1 10 G A 12 ? G B 12 . ? 4_555 ? 7 AC1 10 G A 13 ? G B 13 . ? 1_555 ? 8 AC1 10 G A 13 ? G B 13 . ? 4_555 ? 9 AC1 10 K C . ? K B 102 . ? 4_555 ? 10 AC1 10 K C . ? K B 102 . ? 1_555 ? 11 AC2 12 G A 2 ? G B 2 . ? 4_555 ? 12 AC2 12 G A 2 ? G B 2 . ? 1_555 ? 13 AC2 12 G A 7 ? G B 7 . ? 1_555 ? 14 AC2 12 G A 7 ? G B 7 . ? 4_555 ? 15 AC2 12 G A 9 ? G B 9 . ? 4_555 ? 16 AC2 12 G A 9 ? G B 9 . ? 1_555 ? 17 AC2 12 G A 12 ? G B 12 . ? 4_555 ? 18 AC2 12 G A 12 ? G B 12 . ? 1_555 ? 19 AC2 12 K B . ? K B 101 . ? 4_555 ? 20 AC2 12 K B . ? K B 101 . ? 1_555 ? 21 AC2 12 K D . ? K B 103 . ? 4_555 ? 22 AC2 12 K D . ? K B 103 . ? 1_555 ? 23 AC3 10 G A 1 ? G B 1 . ? 4_555 ? 24 AC3 10 G A 1 ? G B 1 . ? 1_555 ? 25 AC3 10 G A 2 ? G B 2 . ? 1_555 ? 26 AC3 10 G A 2 ? G B 2 . ? 4_555 ? 27 AC3 10 G A 6 ? G B 6 . ? 4_555 ? 28 AC3 10 G A 6 ? G B 6 . ? 1_555 ? 29 AC3 10 G A 7 ? G B 7 . ? 1_555 ? 30 AC3 10 G A 7 ? G B 7 . ? 4_555 ? 31 AC3 10 K C . ? K B 102 . ? 4_555 ? 32 AC3 10 K C . ? K B 102 . ? 1_555 ? 33 AC4 8 C A 5 ? C B 5 . ? 1_455 ? 34 AC4 8 C A 5 ? C B 5 . ? 4_455 ? 35 AC4 8 G A 10 ? G B 10 . ? 1_555 ? 36 AC4 8 G A 10 ? G B 10 . ? 4_555 ? 37 AC4 8 G A 13 ? G B 13 . ? 4_555 ? 38 AC4 8 G A 13 ? G B 13 . ? 1_555 ? 39 AC4 8 A A 14 ? A B 14 . ? 4_555 ? 40 AC4 8 A A 14 ? A B 14 . ? 1_555 ? # _atom_sites.entry_id 6JJI _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.042537 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034195 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017374 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 G 2 2 2 G G B . n A 1 3 C 3 3 3 C C B . n A 1 4 U 4 4 4 U U B . n A 1 5 C 5 5 5 C C B . n A 1 6 G 6 6 6 G G B . n A 1 7 G 7 7 7 G G B . n A 1 8 C 8 8 8 C C B . n A 1 9 G 9 9 9 G G B . n A 1 10 G 10 10 10 G G B . n A 1 11 C 11 11 11 C C B . n A 1 12 G 12 12 12 G G B . n A 1 13 G 13 13 13 G G B . n A 1 14 A 14 14 14 A A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 101 1 K K B . C 2 K 1 102 2 K K B . D 2 K 1 103 3 K K B . E 3 POH 1 104 1 POH POH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 900 ? 1 MORE -4 ? 1 'SSA (A^2)' 5440 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B K 101 ? B K . 2 1 B K 102 ? C K . 3 1 B K 103 ? D K . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 1 ? B G 1 ? 1_555 0.0 ? 2 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 2 ? B G 2 ? 1_555 79.9 ? 3 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 2 ? B G 2 ? 1_555 79.9 ? 4 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 2 ? B G 2 ? 1_555 79.9 ? 5 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 2 ? B G 2 ? 1_555 79.9 ? 6 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 2 ? B G 2 ? 1_555 0.0 ? 7 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 78.1 ? 8 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 78.1 ? 9 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 94.3 ? 10 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 94.3 ? 11 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 78.1 ? 12 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 78.1 ? 13 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 94.3 ? 14 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 94.3 ? 15 O6 ? A G 6 ? B G 6 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 0.0 ? 16 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 145.3 ? 17 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 145.3 ? 18 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 70.0 ? 19 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 70.0 ? 20 O6 ? A G 6 ? B G 6 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 87.1 ? 21 O6 ? A G 6 ? B G 6 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 87.1 ? 22 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 145.3 ? 23 O6 ? A G 1 ? B G 1 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 145.3 ? 24 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 70.0 ? 25 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 70.0 ? 26 O6 ? A G 6 ? B G 6 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 87.1 ? 27 O6 ? A G 6 ? B G 6 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 87.1 ? 28 O6 ? A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 103 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 0.0 ? 29 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 2 ? B G 2 ? 1_555 0.0 ? 30 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 69.5 ? 31 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 69.5 ? 32 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 69.5 ? 33 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 69.5 ? 34 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 7 ? B G 7 ? 1_555 0.0 ? 35 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 130.1 ? 36 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 130.1 ? 37 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 77.1 ? 38 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 77.1 ? 39 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 130.1 ? 40 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 130.1 ? 41 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 77.1 ? 42 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 77.1 ? 43 O6 ? A G 9 ? B G 9 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 0.0 ? 44 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 82.0 ? 45 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 82.0 ? 46 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 87.5 ? 47 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 87.5 ? 48 O6 ? A G 9 ? B G 9 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 60.2 ? 49 O6 ? A G 9 ? B G 9 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 60.2 ? 50 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 82.0 ? 51 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 82.0 ? 52 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 87.5 ? 53 O6 ? A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 87.5 ? 54 O6 ? A G 9 ? B G 9 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 60.2 ? 55 O6 ? A G 9 ? B G 9 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 60.2 ? 56 O6 ? A G 12 ? B G 12 ? 1_555 K ? C K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 0.0 ? 57 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 0.0 ? 58 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 10 ? B G 10 ? 1_555 79.8 ? 59 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 10 ? B G 10 ? 1_555 79.8 ? 60 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 10 ? B G 10 ? 1_555 79.8 ? 61 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 10 ? B G 10 ? 1_555 79.8 ? 62 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 10 ? B G 10 ? 1_555 0.0 ? 63 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 53.9 ? 64 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 53.9 ? 65 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 93.7 ? 66 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 93.7 ? 67 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 53.9 ? 68 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 53.9 ? 69 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 93.7 ? 70 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 93.7 ? 71 O6 ? A G 12 ? B G 12 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 0.0 ? 72 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 121.1 ? 73 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 121.1 ? 74 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 85.3 ? 75 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 85.3 ? 76 O6 ? A G 12 ? B G 12 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 71.0 ? 77 O6 ? A G 12 ? B G 12 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 71.0 ? 78 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 121.1 ? 79 O6 ? A G 9 ? B G 9 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 121.1 ? 80 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 85.3 ? 81 O6 ? A G 10 ? B G 10 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 85.3 ? 82 O6 ? A G 12 ? B G 12 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 71.0 ? 83 O6 ? A G 12 ? B G 12 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 71.0 ? 84 O6 ? A G 13 ? B G 13 ? 1_555 K ? B K . ? B K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 0.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-02-26 2 'Structure model' 1 1 2020-09-09 3 'Structure model' 1 2 2020-10-07 4 'Structure model' 1 3 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' 5 3 'Structure model' 'Database references' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_struct_conn_angle 4 2 'Structure model' refine_ls_shell 5 2 'Structure model' reflns_shell 6 2 'Structure model' struct_conn 7 3 'Structure model' citation 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' database_2 11 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.value' 15 2 'Structure model' '_refine_ls_shell.d_res_low' 16 2 'Structure model' '_reflns_shell.d_res_low' 17 2 'Structure model' '_struct_conn.pdbx_dist_value' 18 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 20 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 2 'Structure model' '_struct_conn.ptnr2_symmetry' 23 3 'Structure model' '_citation.journal_volume' 24 3 'Structure model' '_citation.page_first' 25 3 'Structure model' '_citation.page_last' 26 4 'Structure model' '_database_2.pdbx_DOI' 27 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 8.0762 _pdbx_refine_tls.origin_y 2.9584 _pdbx_refine_tls.origin_z 4.4843 _pdbx_refine_tls.T[1][1] 0.4487 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.1394 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] 0.0071 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.5065 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] 0.0850 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.5806 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 3.7420 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.3343 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] 0.0303 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 9.3281 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.9756 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 2.8320 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.1476 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.0432 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.3778 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 1.5600 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.2791 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.2917 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.3647 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.1161 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.2184 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? B 1 ? ? B 14 ? all 2 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? C 3 ? all 3 'X-RAY DIFFRACTION' 1 ? ? T 1 ? ? T 1 ? all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.13_2998 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6JJI _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 K K K N N 111 POH CX3 C Y N 112 POH C2A C Y N 113 POH C71 C Y N 114 POH C81 C Y N 115 POH C91 C Y N 116 POH CXN C N N 117 POH C3A C Y N 118 POH C4A C Y N 119 POH C1A C Y N 120 POH CXD C Y N 121 POH NXT N Y N 122 POH NA N Y N 123 POH NB N Y N 124 POH NC N Y N 125 POH ND N Y N 126 POH CHB C Y N 127 POH C1B C Y N 128 POH CX4 C Y N 129 POH C2B C Y N 130 POH C72 C Y N 131 POH C82 C Y N 132 POH C92 C Y N 133 POH CXO C N N 134 POH C3B C Y N 135 POH C4B C Y N 136 POH CXE C Y N 137 POH NXU N Y N 138 POH CHC C Y N 139 POH C1C C Y N 140 POH CX5 C Y N 141 POH C2C C Y N 142 POH C73 C Y N 143 POH C83 C Y N 144 POH C93 C Y N 145 POH CXP C N N 146 POH C3C C Y N 147 POH C4C C Y N 148 POH CXF C Y N 149 POH NXV N Y N 150 POH CHD C Y N 151 POH C1D C Y N 152 POH CX6 C Y N 153 POH C2D C Y N 154 POH C74 C Y N 155 POH C84 C Y N 156 POH C94 C Y N 157 POH CXQ C N N 158 POH C3D C Y N 159 POH C4D C Y N 160 POH CXG C Y N 161 POH CHA C Y N 162 POH NXW N Y N 163 POH H51 H N N 164 POH H11 H N N 165 POH H31 H N N 166 POH H41 H N N 167 POH H811 H N N 168 POH H821 H N N 169 POH H831 H N N 170 POH H21 H N N 171 POH H61 H N N 172 POH H71 H N N 173 POH H73 H N N 174 POH H52 H N N 175 POH H12 H N N 176 POH H32 H N N 177 POH H42 H N N 178 POH H812 H N N 179 POH H822 H N N 180 POH H832 H N N 181 POH H22 H N N 182 POH H62 H N N 183 POH H53 H N N 184 POH H13 H N N 185 POH H33 H N N 186 POH H43 H N N 187 POH H813 H N N 188 POH H823 H N N 189 POH H833 H N N 190 POH H23 H N N 191 POH H63 H N N 192 POH H54 H N N 193 POH H14 H N N 194 POH H34 H N N 195 POH H44 H N N 196 POH H814 H N N 197 POH H824 H N N 198 POH H834 H N N 199 POH H24 H N N 200 POH H64 H N N 201 U OP3 O N N 202 U P P N N 203 U OP1 O N N 204 U OP2 O N N 205 U "O5'" O N N 206 U "C5'" C N N 207 U "C4'" C N R 208 U "O4'" O N N 209 U "C3'" C N S 210 U "O3'" O N N 211 U "C2'" C N R 212 U "O2'" O N N 213 U "C1'" C N R 214 U N1 N N N 215 U C2 C N N 216 U O2 O N N 217 U N3 N N N 218 U C4 C N N 219 U O4 O N N 220 U C5 C N N 221 U C6 C N N 222 U HOP3 H N N 223 U HOP2 H N N 224 U "H5'" H N N 225 U "H5''" H N N 226 U "H4'" H N N 227 U "H3'" H N N 228 U "HO3'" H N N 229 U "H2'" H N N 230 U "HO2'" H N N 231 U "H1'" H N N 232 U H3 H N N 233 U H5 H N N 234 U H6 H N N 235 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 POH CX3 CXD doub Y N 116 POH CX3 NXT sing Y N 117 POH C2A C3A doub Y N 118 POH C2A C1A sing Y N 119 POH C71 C81 doub Y N 120 POH C71 CXD sing Y N 121 POH C71 CHB sing Y N 122 POH C81 C91 sing Y N 123 POH C91 NXT doub Y N 124 POH CXN NXT sing N N 125 POH C3A C4A sing Y N 126 POH C4A NA sing Y N 127 POH C4A CHB doub Y N 128 POH C1A NA sing Y N 129 POH C1A CHA doub Y N 130 POH NB C1B doub Y N 131 POH NB C4B sing Y N 132 POH NC C1C sing Y N 133 POH NC C4C sing Y N 134 POH ND C1D sing Y N 135 POH ND C4D doub Y N 136 POH CHB C1B sing Y N 137 POH C1B C2B sing Y N 138 POH CX4 CXE doub Y N 139 POH CX4 NXU sing Y N 140 POH C2B C3B doub Y N 141 POH C72 C82 doub Y N 142 POH C72 CXE sing Y N 143 POH C72 CHC sing Y N 144 POH C82 C92 sing Y N 145 POH C92 NXU doub Y N 146 POH CXO NXU sing N N 147 POH C3B C4B sing Y N 148 POH C4B CHC doub Y N 149 POH CHC C1C sing Y N 150 POH C1C C2C doub Y N 151 POH CX5 CXF doub Y N 152 POH CX5 NXV sing Y N 153 POH C2C C3C sing Y N 154 POH C73 C83 doub Y N 155 POH C73 CXF sing Y N 156 POH C73 CHD sing Y N 157 POH C83 C93 sing Y N 158 POH C93 NXV doub Y N 159 POH CXP NXV sing N N 160 POH C3C C4C doub Y N 161 POH C4C CHD sing Y N 162 POH CHD C1D doub Y N 163 POH C1D C2D sing Y N 164 POH CX6 CXG sing Y N 165 POH CX6 NXW doub Y N 166 POH C2D C3D doub Y N 167 POH C74 C84 sing Y N 168 POH C74 CXG doub Y N 169 POH C74 CHA sing Y N 170 POH C84 C94 doub Y N 171 POH C94 NXW sing Y N 172 POH CXQ NXW sing N N 173 POH C3D C4D sing Y N 174 POH C4D CHA sing Y N 175 POH CX3 H51 sing N N 176 POH C2A H11 sing N N 177 POH C81 H31 sing N N 178 POH C91 H41 sing N N 179 POH CXN H811 sing N N 180 POH CXN H821 sing N N 181 POH CXN H831 sing N N 182 POH C3A H21 sing N N 183 POH CXD H61 sing N N 184 POH NA H71 sing N N 185 POH NC H73 sing N N 186 POH CX4 H52 sing N N 187 POH C2B H12 sing N N 188 POH C82 H32 sing N N 189 POH C92 H42 sing N N 190 POH CXO H812 sing N N 191 POH CXO H822 sing N N 192 POH CXO H832 sing N N 193 POH C3B H22 sing N N 194 POH CXE H62 sing N N 195 POH CX5 H53 sing N N 196 POH C2C H13 sing N N 197 POH C83 H33 sing N N 198 POH C93 H43 sing N N 199 POH CXP H813 sing N N 200 POH CXP H823 sing N N 201 POH CXP H833 sing N N 202 POH C3C H23 sing N N 203 POH CXF H63 sing N N 204 POH CX6 H54 sing N N 205 POH C2D H14 sing N N 206 POH C84 H34 sing N N 207 POH C94 H44 sing N N 208 POH CXQ H814 sing N N 209 POH CXQ H824 sing N N 210 POH CXQ H834 sing N N 211 POH C3D H24 sing N N 212 POH CXG H64 sing N N 213 U OP3 P sing N N 214 U OP3 HOP3 sing N N 215 U P OP1 doub N N 216 U P OP2 sing N N 217 U P "O5'" sing N N 218 U OP2 HOP2 sing N N 219 U "O5'" "C5'" sing N N 220 U "C5'" "C4'" sing N N 221 U "C5'" "H5'" sing N N 222 U "C5'" "H5''" sing N N 223 U "C4'" "O4'" sing N N 224 U "C4'" "C3'" sing N N 225 U "C4'" "H4'" sing N N 226 U "O4'" "C1'" sing N N 227 U "C3'" "O3'" sing N N 228 U "C3'" "C2'" sing N N 229 U "C3'" "H3'" sing N N 230 U "O3'" "HO3'" sing N N 231 U "C2'" "O2'" sing N N 232 U "C2'" "C1'" sing N N 233 U "C2'" "H2'" sing N N 234 U "O2'" "HO2'" sing N N 235 U "C1'" N1 sing N N 236 U "C1'" "H1'" sing N N 237 U N1 C2 sing N N 238 U N1 C6 sing N N 239 U C2 O2 doub N N 240 U C2 N3 sing N N 241 U N3 C4 sing N N 242 U N3 H3 sing N N 243 U C4 O4 doub N N 244 U C4 C5 sing N N 245 U C5 C6 doub N N 246 U C5 H5 sing N N 247 U C6 H6 sing N N 248 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6JJI 'double helix' 6JJI 'parallel strands' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A G 6 1_555 1.273 3.791 -0.401 9.374 3.602 -88.082 1 B_G1:G6_B B 1 ? B 6 ? 6 3 1 A G 2 1_555 A G 7 1_555 1.431 3.409 -0.010 -2.997 -1.278 -90.480 2 B_G2:G7_B B 2 ? B 7 ? 6 3 1 A G 12 1_555 A G 9 1_555 -0.986 -3.505 -0.049 -0.174 -4.318 97.267 3 B_G12:G9_B B 12 ? B 9 ? 6 3 1 A G 13 1_555 A G 10 1_555 -2.184 -3.269 -0.601 6.398 11.405 91.153 4 B_G13:G10_B B 13 ? B 10 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A G 6 1_555 A G 2 1_555 A G 7 1_555 -0.347 -1.530 -3.158 -2.317 1.363 45.546 -1.858 0.644 -3.180 1.759 2.989 45.621 1 BB_G1G2:G7G6_BB B 1 ? B 6 ? B 2 ? B 7 ? 1 A G 2 1_555 A G 7 1_555 A G 12 1_555 A G 9 1_555 -1.378 -3.234 -0.177 115.477 -127.827 174.849 -1.620 0.687 -0.110 -63.916 -57.741 179.653 2 BB_G2G12:G9G7_BB B 2 ? B 7 ? B 12 ? B 9 ? 1 A G 12 1_555 A G 9 1_555 A G 13 1_555 A G 10 1_555 -0.507 -1.235 3.111 -3.952 -0.328 34.520 -2.021 0.268 3.159 -0.550 6.633 34.740 3 BB_G12G13:G10G9_BB B 12 ? B 9 ? B 13 ? B 10 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31672558 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 K ? ? K ? ? 'SUBJECT OF INVESTIGATION' ? 2 POH ? ? POH ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 '(1Z,4Z,9Z,15Z)-5,10,15,20-tetrakis(1-methylpyridin-1-ium-4-yl)-21,23-dihydroporphyrin' POH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JJH _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details dimer #