HEADER MEMBRANE PROTEIN 28-FEB-19 6JKD TITLE CRYSTAL STRUCTURE OF TETRAMERIC PEPTSO2 IN I4 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTON:OLIGOPEPTIDE SYMPORTER POT FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS MR-1; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_1277; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDE TRANSPORTER, LCP CRYSTALLIZATION, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NAGAMURA,M.FUKUDA,R.ISHITANI,O.NUREKI REVDAT 2 22-NOV-23 6JKD 1 REMARK REVDAT 1 15-MAY-19 6JKD 0 JRNL AUTH R.NAGAMURA,M.FUKUDA,A.KAWAMOTO,K.MATOBA,N.DOHMAE,R.ISHITANI, JRNL AUTH 2 J.TAKAGI,O.NUREKI JRNL TITL STRUCTURAL BASIS FOR OLIGOMERIZATION OF THE PROKARYOTIC JRNL TITL 2 PEPTIDE TRANSPORTER PEPTSO2. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 75 348 2019 JRNL REFN ESSN 2053-230X JRNL PMID 31045564 JRNL DOI 10.1107/S2053230X19003546 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 6420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.810 REMARK 3 FREE R VALUE TEST SET COUNT : 630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2958 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3389 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3476 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.569 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JKD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6448 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.39400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.10900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 200, 100 MM NA MALONATE, PH REMARK 280 7.0, 100 MM NA ACETATE, PH 4.0, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.05000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.05000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 57.57500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.05000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 57.57500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 57.57500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 76010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 ASP A 136 REMARK 465 SER A 266 REMARK 465 GLU A 267 REMARK 465 PRO A 268 REMARK 465 SER A 269 REMARK 465 GLU A 270 REMARK 465 ALA A 347 REMARK 465 GLY A 348 REMARK 465 ARG A 349 REMARK 465 ASN A 350 REMARK 465 ASN A 351 REMARK 465 LYS A 352 REMARK 465 ASP A 353 REMARK 465 PHE A 354 REMARK 465 SER A 355 REMARK 465 ALA A 414 REMARK 465 ARG A 415 REMARK 465 TYR A 416 REMARK 465 VAL A 417 REMARK 465 PRO A 418 REMARK 465 ALA A 419 REMARK 465 ARG A 420 REMARK 465 MET A 421 REMARK 465 GLY A 422 REMARK 465 GLU A 493 REMARK 465 SER A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 ALA A 497 REMARK 465 HIS A 498 REMARK 465 SER A 499 REMARK 465 SER A 500 REMARK 465 ILE A 501 REMARK 465 GLU A 502 REMARK 465 ASN A 503 REMARK 465 ASN A 504 REMARK 465 ALA A 505 REMARK 465 ALA A 506 REMARK 465 ALA A 507 REMARK 465 SER A 508 REMARK 465 LEU A 509 REMARK 465 ARG A 510 REMARK 465 ASP A 511 REMARK 465 VAL A 512 REMARK 465 LYS A 513 REMARK 465 ALA A 514 REMARK 465 GLU A 515 REMARK 465 GLN A 516 REMARK 465 LEU A 517 REMARK 465 GLU A 518 REMARK 465 SER A 519 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 GLU A 522 REMARK 465 ASN A 523 REMARK 465 LEU A 524 REMARK 465 TYR A 525 REMARK 465 PHE A 526 REMARK 465 GLN A 527 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CE NZ REMARK 470 PHE A 176 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 SER A 202 OG REMARK 470 ASN A 205 CG OD1 ND2 REMARK 470 SER A 208 OG REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 VAL A 215 CG1 CG2 REMARK 470 ARG A 271 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 342 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 342 CZ3 CH2 REMARK 470 SER A 343 OG REMARK 470 TYR A 344 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP A 346 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 346 CZ3 CH2 REMARK 470 THR A 386 OG1 CG2 REMARK 470 LEU A 408 CG CD1 CD2 REMARK 470 MET A 412 CG SD CE REMARK 470 ILE A 413 CG1 CG2 CD1 REMARK 470 PHE A 424 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 33.07 -96.58 REMARK 500 PHE A 120 -61.44 -94.98 REMARK 500 ASN A 174 -52.68 -134.36 REMARK 500 PRO A 214 -176.96 -67.55 REMARK 500 THR A 296 -81.21 -105.16 REMARK 500 ASP A 309 106.72 -59.75 REMARK 500 ALA A 447 58.78 -116.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 6JKD A 1 516 UNP Q8EHE6 Q8EHE6_SHEON 1 516 SEQADV 6JKD LEU A 517 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD GLU A 518 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD SER A 519 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD SER A 520 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD GLY A 521 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD GLU A 522 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD ASN A 523 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD LEU A 524 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD TYR A 525 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD PHE A 526 UNP Q8EHE6 EXPRESSION TAG SEQADV 6JKD GLN A 527 UNP Q8EHE6 EXPRESSION TAG SEQRES 1 A 527 MET THR LEU GLY THR ASN GLN VAL SER LYS THR HIS SER SEQRES 2 A 527 PHE MET THR VAL SER LEU ILE GLU LEU TRP GLU ARG PHE SEQRES 3 A 527 GLY TYR TYR GLY MET GLN ALA LEU ILE VAL TYR PHE MET SEQRES 4 A 527 VAL GLN ARG LEU GLY PHE ASP ASP SER ARG ALA ASN LEU SEQRES 5 A 527 VAL TRP SER ALA CYS ALA ALA LEU ILE TYR VAL SER PRO SEQRES 6 A 527 ALA ILE GLY GLY TRP VAL GLY ASP LYS ILE LEU GLY THR SEQRES 7 A 527 LYS ARG THR MET LEU LEU GLY ALA GLY ILE LEU SER VAL SEQRES 8 A 527 GLY TYR ALA LEU MET THR VAL PRO THR GLU ASN THR TRP SEQRES 9 A 527 PHE MET PHE SER ALA LEU GLY VAL ILE VAL VAL GLY ASN SEQRES 10 A 527 GLY LEU PHE LYS PRO ASN ALA GLY ASN LEU VAL ARG LYS SEQRES 11 A 527 ILE TYR GLU GLY ASP ASP SER LYS ILE ASP SER ALA PHE SEQRES 12 A 527 THR ILE TYR TYR MET ALA VAL ASN VAL GLY SER THR PHE SEQRES 13 A 527 SER MET LEU LEU THR PRO TRP ILE LYS ASP TYR VAL ASN SEQRES 14 A 527 ALA GLN TYR GLY ASN GLU PHE GLY TRP HIS ALA ALA PHE SEQRES 15 A 527 ALA VAL CYS CYS VAL GLY ILE LEU VAL GLY LEU GLY ASN SEQRES 16 A 527 TYR ALA LEU MET HIS LYS SER LEU ALA ASN TYR GLY SER SEQRES 17 A 527 GLU PRO ASP THR ARG PRO VAL ASN LYS LYS SER LEU ALA SEQRES 18 A 527 ILE VAL LEU ALA LEU ALA ALA LEU SER VAL VAL ALA SER SEQRES 19 A 527 ALA ILE ILE LEU GLU TYR GLU ASP VAL ALA ARG VAL PHE SEQRES 20 A 527 VAL TYR ALA ALA GLY VAL ALA VAL LEU GLY ILE PHE PHE SEQRES 21 A 527 HIS LEU ILE ARG THR SER GLU PRO SER GLU ARG ALA GLY SEQRES 22 A 527 LEU ILE ALA ALA LEU ILE LEU THR VAL GLN THR VAL PHE SEQRES 23 A 527 PHE PHE ILE PHE TYR GLN GLN MET SER THR SER LEU ALA SEQRES 24 A 527 LEU PHE ALA LEU ARG ASN VAL ASP TRP ASP PHE GLN VAL SEQRES 25 A 527 PHE GLY THR HIS LEU TRP THR TRP SER PRO ALA GLN PHE SEQRES 26 A 527 GLN ALA LEU ASN PRO ILE TRP ILE MET VAL LEU SER PRO SEQRES 27 A 527 VAL LEU ALA TRP SER TYR SER TRP ALA GLY ARG ASN ASN SEQRES 28 A 527 LYS ASP PHE SER ILE ALA ALA LYS PHE ALA LEU GLY PHE SEQRES 29 A 527 ALA VAL VAL ALA ILE GLY PHE PHE ILE TYR GLY PHE ALA SEQRES 30 A 527 GLY GLN PHE ALA VAL ASN GLY LYS THR SER SER TRP VAL SEQRES 31 A 527 MET ILE TRP GLY TYR ALA SER TYR SER LEU GLY GLU LEU SEQRES 32 A 527 LEU VAL SER GLY LEU GLY LEU ALA MET ILE ALA ARG TYR SEQRES 33 A 527 VAL PRO ALA ARG MET GLY GLY PHE MET MET GLY ALA TYR SEQRES 34 A 527 PHE VAL ALA SER GLY ILE SER GLN TYR LEU GLY GLY VAL SEQRES 35 A 527 VAL ALA ASN PHE ALA SER VAL PRO GLN ASP LEU VAL ASP SEQRES 36 A 527 PRO LEU GLN THR LEU PRO VAL TYR THR ASN LEU PHE ASN SEQRES 37 A 527 LYS LEU GLY VAL ALA ALA VAL VAL CYS THR ILE ILE ALA SEQRES 38 A 527 LEU ALA VAL LEU PRO LEU MET ARG ARG LEU THR GLU SER SEQRES 39 A 527 HIS HIS ALA HIS SER SER ILE GLU ASN ASN ALA ALA ALA SEQRES 40 A 527 SER LEU ARG ASP VAL LYS ALA GLU GLN LEU GLU SER SER SEQRES 41 A 527 GLY GLU ASN LEU TYR PHE GLN HELIX 1 AA1 SER A 9 GLN A 41 1 33 HELIX 2 AA2 ASP A 46 ILE A 75 1 30 HELIX 3 AA3 GLY A 77 THR A 97 1 21 HELIX 4 AA4 ASN A 102 TYR A 132 1 31 HELIX 5 AA5 LYS A 138 GLY A 173 1 36 HELIX 6 AA6 GLU A 175 HIS A 200 1 26 HELIX 7 AA7 LYS A 201 ASN A 205 5 5 HELIX 8 AA8 GLU A 209 ARG A 213 5 5 HELIX 9 AA9 ASN A 216 TYR A 240 1 25 HELIX 10 AB1 TYR A 240 ARG A 264 1 25 HELIX 11 AB2 GLY A 273 MET A 294 1 22 HELIX 12 AB3 THR A 296 ASN A 305 1 10 HELIX 13 AB4 ALA A 323 GLN A 326 5 4 HELIX 14 AB5 ALA A 327 TRP A 346 1 20 HELIX 15 AB6 ALA A 358 ALA A 381 1 24 HELIX 16 AB7 SER A 388 VAL A 405 1 18 HELIX 17 AB8 PHE A 424 ASN A 445 1 22 HELIX 18 AB9 PHE A 446 SER A 448 5 3 HELIX 19 AC1 ASP A 455 THR A 492 1 38 SHEET 1 AA1 2 ASP A 309 VAL A 312 0 SHEET 2 AA1 2 THR A 315 THR A 319 -1 O TRP A 318 N PHE A 310 CRYST1 115.150 115.150 110.100 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008684 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009083 0.00000