HEADER TRANSFERASE 01-MAR-19 6JKI TITLE CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF THE ESSENTIAL M1G37 TRNA TITLE 2 METHYLTRANSFERASE TRMD FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 GENE: TRMD, PA14_15990; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE, TRMD, PSEUDOMONAS AERUGIONA, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.JAROENSUK,C.W.LIEW,S.ATICHARTPONGKUL,Y.H.CHIONH,Y.H.WONG,W.H.ZHONG, AUTHOR 2 M.E.MCBEE,N.THONGDEE,E.G.PRESTWICH,M.S.DEMOTT,S.MONGKOLSUK, AUTHOR 3 P.C.DEDON,J.LESCAR,M.FUANGTHONG REVDAT 4 22-NOV-23 6JKI 1 LINK REVDAT 3 30-OCT-19 6JKI 1 JRNL REVDAT 2 02-OCT-19 6JKI 1 JRNL REVDAT 1 03-JUL-19 6JKI 0 JRNL AUTH J.JAROENSUK,Y.H.WONG,W.ZHONG,C.W.LIEW,S.MAENPUEN,A.E.SAHILI, JRNL AUTH 2 S.ATICHARTPONGKUL,Y.H.CHIONH,Q.NAH,N.THONGDEE,M.E.MCBEE, JRNL AUTH 3 E.G.PRESTWICH,M.S.DEMOTT,P.CHAIYEN,S.MONGKOLSUK,P.C.DEDON, JRNL AUTH 4 J.LESCAR,M.FUANGTHONG JRNL TITL CRYSTAL STRUCTURE AND CATALYTIC MECHANISM OF THE ESSENTIAL JRNL TITL 2 M1G37 TRNA METHYLTRANSFERASE TRMD FROMPSEUDOMONAS JRNL TITL 3 AERUGINOSA. JRNL REF RNA V. 25 1481 2019 JRNL REFN ESSN 1469-9001 JRNL PMID 31399541 JRNL DOI 10.1261/RNA.066746.118 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.32 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 402 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4100 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 382 REMARK 3 BIN R VALUE (WORKING SET) : 0.3974 REMARK 3 BIN FREE R VALUE : 0.6809 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3844 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 133 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56300 REMARK 3 B22 (A**2) : -0.56300 REMARK 3 B33 (A**2) : 1.12610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.620 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.293 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.571 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.294 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4038 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5443 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1441 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 678 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4038 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 497 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4574 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.18 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.0 - 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.890575 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 OPTICS : CRYOGENICALLY COOLED CHANNEL CUT REMARK 200 CRYSTAL MONOCHROMATOR, A CONVEX REMARK 200 PREFOCUSSING MIRROR AND A REMARK 200 KIRKPATRICK-BAEZ PAIR OF REMARK 200 FOCUSSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 49.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5GM8 REMARK 200 REMARK 200 REMARK: CUBIC SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, PH 8.4, 12.5% (V/V) REMARK 280 MPD, 12.5% (W/V) PEG 1000, 12.5% (W/V) PEG 3350, 5% (W/V) PEG REMARK 280 200, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.20000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.20000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 166 REMARK 465 HIS A 167 REMARK 465 ALA A 168 REMARK 465 ASP A 169 REMARK 465 SER A 170 REMARK 465 ALA A 171 REMARK 465 GLU A 172 REMARK 465 ASP A 251 REMARK 465 SER A 252 REMARK 465 GLY B 166 REMARK 465 HIS B 167 REMARK 465 ALA B 168 REMARK 465 ASP B 169 REMARK 465 ASP B 251 REMARK 465 SER B 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 175 O SFG A 306 1.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 120 -133.29 59.40 REMARK 500 SER A 231 47.22 -91.06 REMARK 500 ARG B 49 -8.61 -59.71 REMARK 500 TYR B 120 -130.33 59.16 REMARK 500 GLU B 173 42.88 -145.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 509 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SFG A 301 N REMARK 620 2 ASP B 182 OD2 85.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 510 DBREF 6JKI A 5 252 UNP Q02RL6 TRMD_PSEAB 5 252 DBREF 6JKI B 5 252 UNP Q02RL6 TRMD_PSEAB 5 252 SEQADV 6JKI SER A 3 UNP Q02RL6 EXPRESSION TAG SEQADV 6JKI MET A 4 UNP Q02RL6 EXPRESSION TAG SEQADV 6JKI SER B 3 UNP Q02RL6 EXPRESSION TAG SEQADV 6JKI MET B 4 UNP Q02RL6 EXPRESSION TAG SEQRES 1 A 250 SER MET LEU TRP VAL GLY VAL VAL SER ILE PHE PRO GLU SEQRES 2 A 250 MET PHE ARG ALA ILE SER ASP TYR GLY ILE THR SER ARG SEQRES 3 A 250 ALA VAL LYS GLN GLY LEU LEU THR LEU THR CYS TRP ASN SEQRES 4 A 250 PRO ARG VAL TYR THR GLU ASP ARG HIS GLN THR VAL ASP SEQRES 5 A 250 ASP ARG PRO PHE GLY GLY GLY PRO GLY MET VAL MET LYS SEQRES 6 A 250 ILE LYS PRO LEU GLU GLY ALA LEU ALA ASP ALA ARG GLN SEQRES 7 A 250 ALA ALA GLY GLY ARG LYS ALA LYS VAL ILE TYR LEU SER SEQRES 8 A 250 PRO GLN GLY ARG GLN LEU THR GLN ALA GLY VAL ARG GLU SEQRES 9 A 250 LEU ALA GLU GLU GLU ALA LEU ILE LEU ILE ALA GLY ARG SEQRES 10 A 250 TYR GLU GLY ILE ASP GLU ARG PHE ILE GLU GLU HIS VAL SEQRES 11 A 250 ASP GLU GLU TRP SER ILE GLY ASP TYR VAL LEU SER GLY SEQRES 12 A 250 GLY GLU LEU PRO ALA MET VAL LEU VAL ASP ALA VAL THR SEQRES 13 A 250 ARG LEU LEU PRO GLY ALA LEU GLY HIS ALA ASP SER ALA SEQRES 14 A 250 GLU GLU ASP SER PHE THR ASP GLY LEU LEU ASP CYS PRO SEQRES 15 A 250 HIS TYR THR ARG PRO GLU VAL TYR ALA ASP LYS ARG VAL SEQRES 16 A 250 PRO GLU VAL LEU LEU SER GLY ASN HIS GLU HIS ILE ARG SEQRES 17 A 250 ARG TRP ARG LEU GLN GLN ALA LEU GLY ARG THR TRP GLU SEQRES 18 A 250 ARG ARG ALA ASP LEU LEU ASP SER ARG SER LEU SER GLY SEQRES 19 A 250 GLU GLU GLN LYS LEU LEU ALA GLU TYR ILE ARG GLN ARG SEQRES 20 A 250 ASP ASP SER SEQRES 1 B 250 SER MET LEU TRP VAL GLY VAL VAL SER ILE PHE PRO GLU SEQRES 2 B 250 MET PHE ARG ALA ILE SER ASP TYR GLY ILE THR SER ARG SEQRES 3 B 250 ALA VAL LYS GLN GLY LEU LEU THR LEU THR CYS TRP ASN SEQRES 4 B 250 PRO ARG VAL TYR THR GLU ASP ARG HIS GLN THR VAL ASP SEQRES 5 B 250 ASP ARG PRO PHE GLY GLY GLY PRO GLY MET VAL MET LYS SEQRES 6 B 250 ILE LYS PRO LEU GLU GLY ALA LEU ALA ASP ALA ARG GLN SEQRES 7 B 250 ALA ALA GLY GLY ARG LYS ALA LYS VAL ILE TYR LEU SER SEQRES 8 B 250 PRO GLN GLY ARG GLN LEU THR GLN ALA GLY VAL ARG GLU SEQRES 9 B 250 LEU ALA GLU GLU GLU ALA LEU ILE LEU ILE ALA GLY ARG SEQRES 10 B 250 TYR GLU GLY ILE ASP GLU ARG PHE ILE GLU GLU HIS VAL SEQRES 11 B 250 ASP GLU GLU TRP SER ILE GLY ASP TYR VAL LEU SER GLY SEQRES 12 B 250 GLY GLU LEU PRO ALA MET VAL LEU VAL ASP ALA VAL THR SEQRES 13 B 250 ARG LEU LEU PRO GLY ALA LEU GLY HIS ALA ASP SER ALA SEQRES 14 B 250 GLU GLU ASP SER PHE THR ASP GLY LEU LEU ASP CYS PRO SEQRES 15 B 250 HIS TYR THR ARG PRO GLU VAL TYR ALA ASP LYS ARG VAL SEQRES 16 B 250 PRO GLU VAL LEU LEU SER GLY ASN HIS GLU HIS ILE ARG SEQRES 17 B 250 ARG TRP ARG LEU GLN GLN ALA LEU GLY ARG THR TRP GLU SEQRES 18 B 250 ARG ARG ALA ASP LEU LEU ASP SER ARG SER LEU SER GLY SEQRES 19 B 250 GLU GLU GLN LYS LEU LEU ALA GLU TYR ILE ARG GLN ARG SEQRES 20 B 250 ASP ASP SER HET SFG A 301 27 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET SFG A 306 27 HET MN A 307 1 HET MN A 308 1 HET NA A 309 1 HET PEG B 501 7 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET PEG B 505 7 HET GOL B 506 6 HET GOL B 507 6 HET GOL B 508 6 HET MN B 509 1 HET NA B 510 1 HETNAM SFG SINEFUNGIN HETNAM GOL GLYCEROL HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN SFG ADENOSYL-ORNITHINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SFG 2(C15 H23 N7 O5) FORMUL 4 GOL 10(C3 H8 O3) FORMUL 9 MN 3(MN 2+) FORMUL 11 NA 2(NA 1+) FORMUL 12 PEG 2(C4 H10 O3) FORMUL 22 HOH *135(H2 O) HELIX 1 AA1 PHE A 13 MET A 16 5 4 HELIX 2 AA2 PHE A 17 ASP A 22 1 6 HELIX 3 AA3 TYR A 23 GLN A 32 1 10 HELIX 4 AA4 ASN A 41 TYR A 45 5 5 HELIX 5 AA5 LYS A 67 GLY A 83 1 17 HELIX 6 AA6 THR A 100 ALA A 108 1 9 HELIX 7 AA7 ASP A 124 VAL A 132 1 9 HELIX 8 AA8 GLY A 146 ARG A 159 1 14 HELIX 9 AA9 PRO A 198 GLY A 204 1 7 HELIX 10 AB1 ASN A 205 ARG A 225 1 21 HELIX 11 AB2 ARG A 225 SER A 231 1 7 HELIX 12 AB3 SER A 235 GLN A 248 1 14 HELIX 13 AB4 PHE B 13 MET B 16 5 4 HELIX 14 AB5 PHE B 17 ASP B 22 1 6 HELIX 15 AB6 TYR B 23 GLN B 32 1 10 HELIX 16 AB7 ASN B 41 THR B 46 5 6 HELIX 17 AB8 LYS B 67 GLY B 83 1 17 HELIX 18 AB9 THR B 100 ALA B 108 1 9 HELIX 19 AC1 ASP B 124 VAL B 132 1 9 HELIX 20 AC2 GLY B 146 ARG B 159 1 14 HELIX 21 AC3 PRO B 198 GLY B 204 1 7 HELIX 22 AC4 ASN B 205 ARG B 225 1 21 HELIX 23 AC5 ALA B 226 SER B 231 1 6 HELIX 24 AC6 SER B 235 ARG B 249 1 15 SHEET 1 AA1 6 LEU A 35 TRP A 40 0 SHEET 2 AA1 6 LEU A 5 VAL A 10 1 N VAL A 7 O THR A 36 SHEET 3 AA1 6 ALA A 112 ALA A 117 1 O LEU A 115 N VAL A 10 SHEET 4 AA1 6 ALA A 87 LEU A 92 1 N LYS A 88 O ILE A 114 SHEET 5 AA1 6 GLU A 134 SER A 137 1 O TRP A 136 N TYR A 91 SHEET 6 AA1 6 ARG A 97 GLN A 98 1 N ARG A 97 O GLU A 135 SHEET 1 AA2 2 ASP A 54 ASP A 55 0 SHEET 2 AA2 2 VAL A 65 MET A 66 -1 O VAL A 65 N ASP A 55 SHEET 1 AA3 2 VAL A 191 TYR A 192 0 SHEET 2 AA3 2 LYS A 195 ARG A 196 -1 O LYS A 195 N TYR A 192 SHEET 1 AA4 6 LEU B 35 TRP B 40 0 SHEET 2 AA4 6 LEU B 5 VAL B 10 1 N VAL B 9 O THR B 38 SHEET 3 AA4 6 ALA B 112 ILE B 116 1 O LEU B 115 N VAL B 10 SHEET 4 AA4 6 ALA B 87 LEU B 92 1 N LYS B 88 O ILE B 114 SHEET 5 AA4 6 GLU B 134 SER B 137 1 O TRP B 136 N TYR B 91 SHEET 6 AA4 6 ARG B 97 GLN B 98 1 N ARG B 97 O GLU B 135 SHEET 1 AA5 2 ASP B 54 ASP B 55 0 SHEET 2 AA5 2 VAL B 65 MET B 66 -1 O VAL B 65 N ASP B 55 SHEET 1 AA6 2 VAL B 191 TYR B 192 0 SHEET 2 AA6 2 LYS B 195 ARG B 196 -1 O LYS B 195 N TYR B 192 LINK N SFG A 301 MN MN B 509 1555 1555 2.63 LINK N SFG A 306 MN MN A 307 1555 1555 2.69 LINK OD2 ASP B 182 MN MN B 509 1555 1555 2.34 CISPEP 1 ARG A 188 PRO A 189 0 5.76 CISPEP 2 ARG B 188 PRO B 189 0 6.93 SITE 1 AC1 20 TYR A 91 LEU A 92 SER A 93 PRO A 94 SITE 2 AC1 20 GLN A 95 GLY A 118 TYR A 120 GLU A 121 SITE 3 AC1 20 SER A 137 ILE A 138 GLY A 139 TYR A 141 SITE 4 AC1 20 LEU A 143 GLY A 145 GLY A 146 PRO A 149 SITE 5 AC1 20 ASP B 174 SER B 175 ASP B 182 MN B 509 SITE 1 AC2 4 PRO A 14 LEU A 37 HOH A 410 HOH A 416 SITE 1 AC3 10 TYR A 91 GLN A 95 GLY A 122 ILE A 123 SITE 2 AC3 10 GLU A 125 HOH A 414 HOH A 418 CYS B 183 SITE 3 AC3 10 PRO B 184 HIS B 185 SITE 1 AC4 1 LYS A 31 SITE 1 AC5 3 GLU A 173 ASP A 174 GLU B 121 SITE 1 AC6 19 SER A 175 ASP A 182 MN A 307 TYR B 91 SITE 2 AC6 19 LEU B 92 SER B 93 PRO B 94 GLN B 95 SITE 3 AC6 19 GLY B 118 TYR B 120 GLU B 121 SER B 137 SITE 4 AC6 19 ILE B 138 GLY B 139 TYR B 141 LEU B 143 SITE 5 AC6 19 GLY B 145 GLY B 146 PRO B 149 SITE 1 AC7 6 GLU A 173 ASP A 174 ASP A 182 SFG A 306 SITE 2 AC7 6 GLU B 121 HOH B 601 SITE 1 AC8 2 GLU A 129 TYR B 186 SITE 1 AC9 9 ALA A 19 TYR A 23 THR A 26 ASP A 155 SITE 2 AC9 9 ARG B 119 SER B 144 GLY B 145 LEU B 148 SITE 3 AC9 9 PRO B 149 SITE 1 AD1 4 PRO B 14 PHE B 17 SER B 21 LEU B 37 SITE 1 AD2 2 ALA A 243 VAL B 44 SITE 1 AD3 5 ARG B 43 ARG B 49 GLN B 51 TRP B 222 SITE 2 AD3 5 GLU B 223 SITE 1 AD4 3 ASP B 174 THR B 177 ASP B 182 SITE 1 AD5 6 ASP B 54 TYR B 120 GLU B 223 TYR B 245 SITE 2 AD5 6 ARG B 249 HOH B 604 SITE 1 AD6 5 GLY B 73 ALA B 76 ASP B 77 GLN B 80 SITE 2 AD6 5 HOH B 639 SITE 1 AD7 5 ASP B 133 GLY B 236 GLU B 237 LYS B 240 SITE 2 AD7 5 HOH B 636 SITE 1 AD8 6 GLU A 121 SFG A 301 GLU B 173 ASP B 174 SITE 2 AD8 6 ASP B 182 HIS B 185 SITE 1 AD9 2 ARG B 188 LEU B 202 CRYST1 85.670 85.670 147.600 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011673 0.006739 0.000000 0.00000 SCALE2 0.000000 0.013478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006775 0.00000