HEADER HYDROLASE 02-MAR-19 6JKV TITLE PPPA, A KEY REGULATORY COMPONENT OF T6SS IN PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PPPA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATASE, T6SS REGULATORY COMPONENT, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.WANG,L.LIU,Y.WU,D.LI REVDAT 4 22-NOV-23 6JKV 1 LINK REVDAT 3 17-JUL-19 6JKV 1 JRNL REVDAT 2 03-JUL-19 6JKV 1 JRNL REVDAT 1 26-JUN-19 6JKV 0 JRNL AUTH Y.WU,J.GONG,S.LIU,D.LI,Y.WU,X.ZHANG,Y.REN,S.XU,J.SUN,T.WANG, JRNL AUTH 2 Q.LIN,L.LIU JRNL TITL CRYSTAL STRUCTURE OF PPPA FROM PSEUDOMONAS AERUGINOSA, A KEY JRNL TITL 2 REGULATORY COMPONENT OF TYPE VI SECRETION SYSTEMS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 516 196 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31208722 JRNL DOI 10.1016/J.BBRC.2019.06.020 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 23846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1228 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.198 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3487 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3278 ; 0.009 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4737 ; 1.140 ; 1.622 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7520 ; 1.412 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;28.025 ;19.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;15.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;12.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4005 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 773 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1824 ; 0.794 ; 1.344 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1823 ; 0.794 ; 1.344 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2273 ; 1.082 ; 2.016 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2274 ; 1.082 ; 2.016 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1663 ; 0.728 ; 1.410 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1664 ; 0.728 ; 1.410 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2465 ; 0.947 ; 2.096 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3952 ; 2.578 ;17.448 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3876 ; 2.252 ;16.854 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6765 ; 0.794 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 4 242 B 4 242 6890 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2536 8.4213 -12.3129 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0325 REMARK 3 T33: 0.0387 T12: -0.0077 REMARK 3 T13: 0.0139 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.7580 L22: 1.1785 REMARK 3 L33: 1.5066 L12: -0.2567 REMARK 3 L13: 0.0851 L23: -0.2480 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: -0.0617 S13: -0.0133 REMARK 3 S21: 0.0898 S22: -0.0011 S23: -0.1021 REMARK 3 S31: 0.0247 S32: 0.0663 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 242 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2298 -4.5127 -41.6003 REMARK 3 T TENSOR REMARK 3 T11: 0.0065 T22: 0.0262 REMARK 3 T33: 0.0423 T12: -0.0081 REMARK 3 T13: 0.0106 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.9269 L22: 1.0810 REMARK 3 L33: 1.5073 L12: 0.0723 REMARK 3 L13: 0.0954 L23: -0.2231 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.0391 S13: 0.0233 REMARK 3 S21: 0.0061 S22: -0.0208 S23: -0.0957 REMARK 3 S31: -0.0555 S32: 0.0745 S33: 0.0371 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300010204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25293 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 24.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.030 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TXO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CALCIUM ACETATE HYDRATE, REMARK 280 HEPES, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.12650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 148 REMARK 465 LEU A 149 REMARK 465 ILE A 150 REMARK 465 SER A 151 REMARK 465 GLU A 152 REMARK 465 GLU A 153 REMARK 465 GLU A 154 REMARK 465 ALA A 155 REMARK 465 ARG A 156 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 146 REMARK 465 ASN B 147 REMARK 465 ALA B 148 REMARK 465 LEU B 149 REMARK 465 ILE B 150 REMARK 465 SER B 151 REMARK 465 GLU B 152 REMARK 465 GLU B 153 REMARK 465 GLU B 154 REMARK 465 ALA B 155 REMARK 465 ARG B 156 REMARK 465 HIS B 157 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 68.43 -119.84 REMARK 500 ALA A 48 -71.76 -127.08 REMARK 500 ALA A 230 61.96 35.99 REMARK 500 VAL B 20 -56.01 -121.42 REMARK 500 ALA B 48 -72.80 -126.07 REMARK 500 ALA B 230 65.64 32.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 580 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 9.48 ANGSTROMS REMARK 525 HOH B 582 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 583 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B 584 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 585 DISTANCE = 9.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD1 REMARK 620 2 GLY A 42 O 95.4 REMARK 620 3 HOH A 438 O 93.7 169.6 REMARK 620 4 HOH A 449 O 84.3 87.8 88.0 REMARK 620 5 HOH A 466 O 163.0 78.7 91.2 79.6 REMARK 620 6 HOH A 497 O 101.1 90.3 92.9 174.4 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD2 REMARK 620 2 ASP A 194 OD1 91.1 REMARK 620 3 ASP A 232 OD2 169.5 84.9 REMARK 620 4 HOH A 438 O 100.1 168.5 83.6 REMARK 620 5 HOH A 452 O 94.3 93.4 95.7 88.3 REMARK 620 6 HOH A 472 O 85.6 95.2 85.1 83.3 171.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 41 OD1 REMARK 620 2 GLY B 42 O 96.6 REMARK 620 3 HOH B 461 O 98.3 164.2 REMARK 620 4 HOH B 477 O 171.9 79.2 86.6 REMARK 620 5 HOH B 482 O 89.5 98.6 86.7 84.4 REMARK 620 6 HOH B 524 O 97.8 90.3 82.5 89.1 167.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 41 OD2 REMARK 620 2 ASP B 194 OD1 89.1 REMARK 620 3 ASP B 232 OD2 175.9 93.6 REMARK 620 4 HOH B 409 O 86.3 88.1 96.9 REMARK 620 5 HOH B 435 O 83.7 99.1 92.8 167.5 REMARK 620 6 HOH B 461 O 92.6 173.6 85.1 85.8 87.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 302 DBREF 6JKV A 1 242 UNP Q9I757 Q9I757_PSEAE 1 242 DBREF 6JKV B 1 242 UNP Q9I757 Q9I757_PSEAE 1 242 SEQADV 6JKV MET A -19 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV GLY A -18 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER A -17 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER A -16 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS A -15 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS A -14 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS A -13 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS A -12 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS A -11 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS A -10 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER A -9 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER A -8 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV GLY A -7 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV LEU A -6 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV VAL A -5 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV PRO A -4 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV ARG A -3 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV GLY A -2 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER A -1 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS A 0 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV MET B -19 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV GLY B -18 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER B -17 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER B -16 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS B -15 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS B -14 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS B -13 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS B -12 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS B -11 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS B -10 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER B -9 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER B -8 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV GLY B -7 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV LEU B -6 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV VAL B -5 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV PRO B -4 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV ARG B -3 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV GLY B -2 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV SER B -1 UNP Q9I757 EXPRESSION TAG SEQADV 6JKV HIS B 0 UNP Q9I757 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 262 LEU VAL PRO ARG GLY SER HIS MET VAL PRO ASN SER VAL SEQRES 3 A 262 SER TYR TYR ARG SER ALA SER TYR SER HIS VAL GLY MET SEQRES 4 A 262 VAL ARG LYS VAL ASN GLU ASP ALA SER LEU ASP ALA PRO SEQRES 5 A 262 GLU ALA GLY LEU TRP VAL VAL ALA ASP GLY MET GLY GLY SEQRES 6 A 262 HIS ALA ALA GLY ASP PHE VAL SER SER LEU ILE VAL ASP SEQRES 7 A 262 THR LEU ARG ARG ILE PRO ALA ALA SER SER LEU PRO ALA SEQRES 8 A 262 TYR VAL GLY ALA LEU ARG THR GLY LEU ALA GLN VAL ASN SEQRES 9 A 262 GLU ARG VAL ARG GLN GLU ALA GLY LEU ARG GLY VAL SER SEQRES 10 A 262 VAL MET GLY SER THR LEU VAL LEU LEU ALA ALA ARG GLY SEQRES 11 A 262 ASN GLN ALA SER CYS LEU TRP ALA GLY ASP SER ARG LEU SEQRES 12 A 262 TYR ARG LEU ARG GLY GLY VAL LEU GLU ALA ILE SER ARG SEQRES 13 A 262 ASP HIS SER TYR VAL GLN GLU LEU LEU ASP ASN ALA LEU SEQRES 14 A 262 ILE SER GLU GLU GLU ALA ARG HIS HIS PRO ARG ALA ASN SEQRES 15 A 262 VAL VAL THR ARG ALA VAL GLY VAL HIS GLU GLN LEU GLU SEQRES 16 A 262 LEU SER GLU ALA ALA LEU HIS VAL LEU PRO GLY ASP SER SEQRES 17 A 262 PHE LEU LEU CYS SER ASP GLY LEU ASN LYS THR ALA ASP SEQRES 18 A 262 ASP SER GLU LEU ARG ASP VAL LEU SER HIS SER ASP PRO SEQRES 19 A 262 TYR ALA VAL VAL ARG SER LEU VAL HIS LEU GLY LEU THR SEQRES 20 A 262 ARG GLY ALA PRO ASP ASN ILE THR ALA LEU VAL VAL ARG SEQRES 21 A 262 ALA PHE SEQRES 1 B 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 262 LEU VAL PRO ARG GLY SER HIS MET VAL PRO ASN SER VAL SEQRES 3 B 262 SER TYR TYR ARG SER ALA SER TYR SER HIS VAL GLY MET SEQRES 4 B 262 VAL ARG LYS VAL ASN GLU ASP ALA SER LEU ASP ALA PRO SEQRES 5 B 262 GLU ALA GLY LEU TRP VAL VAL ALA ASP GLY MET GLY GLY SEQRES 6 B 262 HIS ALA ALA GLY ASP PHE VAL SER SER LEU ILE VAL ASP SEQRES 7 B 262 THR LEU ARG ARG ILE PRO ALA ALA SER SER LEU PRO ALA SEQRES 8 B 262 TYR VAL GLY ALA LEU ARG THR GLY LEU ALA GLN VAL ASN SEQRES 9 B 262 GLU ARG VAL ARG GLN GLU ALA GLY LEU ARG GLY VAL SER SEQRES 10 B 262 VAL MET GLY SER THR LEU VAL LEU LEU ALA ALA ARG GLY SEQRES 11 B 262 ASN GLN ALA SER CYS LEU TRP ALA GLY ASP SER ARG LEU SEQRES 12 B 262 TYR ARG LEU ARG GLY GLY VAL LEU GLU ALA ILE SER ARG SEQRES 13 B 262 ASP HIS SER TYR VAL GLN GLU LEU LEU ASP ASN ALA LEU SEQRES 14 B 262 ILE SER GLU GLU GLU ALA ARG HIS HIS PRO ARG ALA ASN SEQRES 15 B 262 VAL VAL THR ARG ALA VAL GLY VAL HIS GLU GLN LEU GLU SEQRES 16 B 262 LEU SER GLU ALA ALA LEU HIS VAL LEU PRO GLY ASP SER SEQRES 17 B 262 PHE LEU LEU CYS SER ASP GLY LEU ASN LYS THR ALA ASP SEQRES 18 B 262 ASP SER GLU LEU ARG ASP VAL LEU SER HIS SER ASP PRO SEQRES 19 B 262 TYR ALA VAL VAL ARG SER LEU VAL HIS LEU GLY LEU THR SEQRES 20 B 262 ARG GLY ALA PRO ASP ASN ILE THR ALA LEU VAL VAL ARG SEQRES 21 B 262 ALA PHE HET MN A 301 1 HET MN A 302 1 HET MN B 301 1 HET MN B 302 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 4(MN 2+) FORMUL 7 HOH *367(H2 O) HELIX 1 AA1 PRO A 32 ALA A 34 5 3 HELIX 2 AA2 ALA A 48 ILE A 63 1 16 HELIX 3 AA3 SER A 68 GLY A 95 1 28 HELIX 4 AA4 SER A 139 ASP A 146 1 8 HELIX 5 AA5 SER A 193 LYS A 198 1 6 HELIX 6 AA6 ASP A 201 SER A 210 1 10 HELIX 7 AA7 ASP A 213 ARG A 228 1 16 HELIX 8 AA8 PRO B 32 ALA B 34 5 3 HELIX 9 AA9 ALA B 48 ILE B 63 1 16 HELIX 10 AB1 SER B 68 GLY B 95 1 28 HELIX 11 AB2 SER B 139 LEU B 145 1 7 HELIX 12 AB3 SER B 193 LYS B 198 1 6 HELIX 13 AB4 ASP B 201 SER B 210 1 10 HELIX 14 AB5 ASP B 213 ARG B 228 1 16 SHEET 1 AA1 5 TYR A 8 HIS A 16 0 SHEET 2 AA1 5 ILE A 234 PHE A 242 -1 O ARG A 240 N ARG A 10 SHEET 3 AA1 5 SER A 188 CYS A 192 -1 N LEU A 191 O LEU A 237 SHEET 4 AA1 5 ARG A 122 ARG A 127 -1 N TYR A 124 O LEU A 190 SHEET 5 AA1 5 VAL A 130 ALA A 133 -1 O GLU A 132 N ARG A 125 SHEET 1 AA2 3 ASP A 26 ALA A 31 0 SHEET 2 AA2 3 LEU A 36 MET A 43 -1 O ALA A 40 N ALA A 27 SHEET 3 AA2 3 GLY A 100 SER A 101 -1 O GLY A 100 N MET A 43 SHEET 1 AA3 5 ASP A 26 ALA A 31 0 SHEET 2 AA3 5 LEU A 36 MET A 43 -1 O ALA A 40 N ALA A 27 SHEET 3 AA3 5 LEU A 103 ARG A 109 -1 O VAL A 104 N VAL A 39 SHEET 4 AA3 5 GLN A 112 ALA A 118 -1 O GLN A 112 N ARG A 109 SHEET 5 AA3 5 SER A 177 HIS A 182 -1 O SER A 177 N TRP A 117 SHEET 1 AA4 5 TYR B 8 HIS B 16 0 SHEET 2 AA4 5 ILE B 234 PHE B 242 -1 O ARG B 240 N ARG B 10 SHEET 3 AA4 5 SER B 188 CYS B 192 -1 N LEU B 191 O LEU B 237 SHEET 4 AA4 5 ARG B 122 ARG B 127 -1 N TYR B 124 O LEU B 190 SHEET 5 AA4 5 VAL B 130 ALA B 133 -1 O GLU B 132 N ARG B 125 SHEET 1 AA5 3 ASP B 26 ALA B 31 0 SHEET 2 AA5 3 LEU B 36 MET B 43 -1 O ALA B 40 N ALA B 27 SHEET 3 AA5 3 GLY B 100 SER B 101 -1 O GLY B 100 N MET B 43 SHEET 1 AA6 5 ASP B 26 ALA B 31 0 SHEET 2 AA6 5 LEU B 36 MET B 43 -1 O ALA B 40 N ALA B 27 SHEET 3 AA6 5 LEU B 103 ARG B 109 -1 O VAL B 104 N VAL B 39 SHEET 4 AA6 5 GLN B 112 ALA B 118 -1 O GLN B 112 N ARG B 109 SHEET 5 AA6 5 SER B 177 HIS B 182 -1 O SER B 177 N TRP B 117 LINK OD1 ASP A 41 MN MN A 301 1555 1555 1.87 LINK OD2 ASP A 41 MN MN A 302 1555 1555 1.99 LINK O GLY A 42 MN MN A 301 1555 1555 2.17 LINK OD1 ASP A 194 MN MN A 302 1555 1555 2.12 LINK OD2 ASP A 232 MN MN A 302 1555 1555 2.15 LINK MN MN A 301 O HOH A 438 1555 1555 2.19 LINK MN MN A 301 O HOH A 449 1555 1555 2.08 LINK MN MN A 301 O HOH A 466 1555 1555 2.11 LINK MN MN A 301 O HOH A 497 1555 1555 1.83 LINK MN MN A 302 O HOH A 438 1555 1555 2.18 LINK MN MN A 302 O HOH A 452 1555 1555 2.05 LINK MN MN A 302 O HOH A 472 1555 1555 2.29 LINK OD1 ASP B 41 MN MN B 301 1555 1555 1.76 LINK OD2 ASP B 41 MN MN B 302 1555 1555 2.14 LINK O GLY B 42 MN MN B 301 1555 1555 2.17 LINK OD1 ASP B 194 MN MN B 302 1555 1555 2.04 LINK OD2 ASP B 232 MN MN B 302 1555 1555 1.98 LINK MN MN B 301 O HOH B 461 1555 1555 2.11 LINK MN MN B 301 O HOH B 477 1555 1555 2.08 LINK MN MN B 301 O HOH B 482 1555 1555 2.11 LINK MN MN B 301 O HOH B 524 1555 1555 2.27 LINK MN MN B 302 O HOH B 409 1555 1555 2.04 LINK MN MN B 302 O HOH B 435 1555 1555 2.21 LINK MN MN B 302 O HOH B 461 1555 1555 2.28 SITE 1 AC1 7 ASP A 41 GLY A 42 MN A 302 HOH A 438 SITE 2 AC1 7 HOH A 449 HOH A 466 HOH A 497 SITE 1 AC2 7 ASP A 41 ASP A 194 ASP A 232 MN A 301 SITE 2 AC2 7 HOH A 438 HOH A 452 HOH A 472 SITE 1 AC3 6 ASP B 41 GLY B 42 HOH B 461 HOH B 477 SITE 2 AC3 6 HOH B 482 HOH B 524 SITE 1 AC4 6 ASP B 41 ASP B 194 ASP B 232 HOH B 409 SITE 2 AC4 6 HOH B 435 HOH B 461 CRYST1 50.541 80.253 59.084 90.00 111.81 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019786 0.000000 0.007916 0.00000 SCALE2 0.000000 0.012461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018229 0.00000