HEADER HYDROLASE 03-MAR-19 6JL0 TITLE CRYSTAL STRUCTURE OF VVPLPA FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLABILE HEMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 672; SOURCE 4 GENE: CRN61_10355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIBRIO, PHOSPHOLIPASE, SGNH HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.MA,Y.WAN,C.LIU REVDAT 5 30-OCT-24 6JL0 1 REMARK REVDAT 4 03-APR-24 6JL0 1 REMARK REVDAT 3 14-AUG-19 6JL0 1 JRNL REVDAT 2 29-MAY-19 6JL0 1 JRNL REVDAT 1 15-MAY-19 6JL0 0 JRNL AUTH Y.WAN,C.LIU,Q.MA JRNL TITL STRUCTURAL ANALYSIS OF AVIBRIOPHOSPHOLIPASE REVEALS AN JRNL TITL 2 UNUSUAL SER-HIS-CHLORIDE CATALYTIC TRIAD. JRNL REF J.BIOL.CHEM. V. 294 11391 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31073025 JRNL DOI 10.1074/JBC.RA119.008280 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 24562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7464 - 5.2211 1.00 2709 147 0.1817 0.2148 REMARK 3 2 5.2211 - 4.1450 1.00 2699 148 0.1533 0.1820 REMARK 3 3 4.1450 - 3.6213 1.00 2709 160 0.1636 0.2017 REMARK 3 4 3.6213 - 3.2903 1.00 2717 163 0.1875 0.2145 REMARK 3 5 3.2903 - 3.0545 1.00 2682 168 0.1980 0.2254 REMARK 3 6 3.0545 - 2.8745 1.00 2706 136 0.2120 0.2356 REMARK 3 7 2.8745 - 2.7305 1.00 2706 134 0.2152 0.2615 REMARK 3 8 2.7305 - 2.6117 1.00 2773 124 0.2111 0.2309 REMARK 3 9 2.6117 - 2.5112 1.00 2726 148 0.2060 0.2351 REMARK 3 10 2.5112 - 2.4245 1.00 2708 118 0.2174 0.2991 REMARK 3 11 2.4245 - 2.3487 1.00 2681 122 0.2204 0.3296 REMARK 3 12 2.3487 - 2.2816 1.00 2718 190 0.2295 0.3108 REMARK 3 13 2.2816 - 2.2215 1.00 2691 140 0.2339 0.2519 REMARK 3 14 2.2215 - 2.1673 1.00 2685 124 0.2206 0.2607 REMARK 3 15 2.1673 - 2.1180 0.98 2714 139 0.2498 0.2968 REMARK 3 16 2.1180 - 2.0730 0.84 2222 123 0.2832 0.3209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3291 REMARK 3 ANGLE : 1.301 4486 REMARK 3 CHIRALITY : 0.084 475 REMARK 3 PLANARITY : 0.011 576 REMARK 3 DIHEDRAL : 12.465 1895 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 24:41) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5612 -8.5606 13.2862 REMARK 3 T TENSOR REMARK 3 T11: 0.4619 T22: 0.5835 REMARK 3 T33: 0.5245 T12: -0.1198 REMARK 3 T13: -0.0455 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.0648 L22: 2.2901 REMARK 3 L33: 6.1271 L12: -0.4535 REMARK 3 L13: -0.7840 L23: -0.2652 REMARK 3 S TENSOR REMARK 3 S11: -0.2210 S12: -0.0330 S13: -0.2591 REMARK 3 S21: -0.0767 S22: 0.0782 S23: 0.5373 REMARK 3 S31: 0.0823 S32: -0.2739 S33: 0.3434 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 42:138) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6119 -0.8892 4.5703 REMARK 3 T TENSOR REMARK 3 T11: 0.4763 T22: 0.4307 REMARK 3 T33: 0.3711 T12: -0.1379 REMARK 3 T13: -0.0427 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.4286 L22: 1.0081 REMARK 3 L33: 1.6046 L12: 1.0991 REMARK 3 L13: 0.0105 L23: 0.0253 REMARK 3 S TENSOR REMARK 3 S11: -0.0626 S12: 0.1024 S13: 0.1167 REMARK 3 S21: -0.1933 S22: 0.0587 S23: 0.0074 REMARK 3 S31: 0.0436 S32: -0.0751 S33: -0.0024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 139:206) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5002 -3.5901 18.0923 REMARK 3 T TENSOR REMARK 3 T11: 0.4280 T22: 0.4660 REMARK 3 T33: 0.3952 T12: -0.1471 REMARK 3 T13: -0.0090 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.2897 L22: 1.2828 REMARK 3 L33: 0.7182 L12: 1.0545 REMARK 3 L13: -0.2749 L23: -0.7555 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: -0.1634 S13: 0.0877 REMARK 3 S21: -0.0059 S22: -0.0296 S23: 0.0251 REMARK 3 S31: -0.0066 S32: 0.0126 S33: 0.0258 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 207:214) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0492 7.0879 29.2077 REMARK 3 T TENSOR REMARK 3 T11: 0.6352 T22: 0.8110 REMARK 3 T33: 0.7856 T12: -0.0803 REMARK 3 T13: 0.0224 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.8961 L22: 0.0660 REMARK 3 L33: 1.6767 L12: -0.0392 REMARK 3 L13: -0.6837 L23: -0.2425 REMARK 3 S TENSOR REMARK 3 S11: 0.4604 S12: -0.2528 S13: 0.4071 REMARK 3 S21: 0.5970 S22: -0.1529 S23: 0.3201 REMARK 3 S31: 0.0980 S32: -0.2998 S33: -0.1517 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 215:281) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1808 -11.1321 27.7793 REMARK 3 T TENSOR REMARK 3 T11: 0.3489 T22: 0.5403 REMARK 3 T33: 0.3205 T12: -0.1972 REMARK 3 T13: 0.0203 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.0902 L22: 1.9011 REMARK 3 L33: 2.1508 L12: -0.1129 REMARK 3 L13: 0.7753 L23: -0.7314 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: -0.3936 S13: 0.1115 REMARK 3 S21: 0.0542 S22: -0.0119 S23: 0.2378 REMARK 3 S31: -0.0964 S32: -0.1144 S33: 0.0762 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 282:342) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0377 -10.2667 36.3741 REMARK 3 T TENSOR REMARK 3 T11: 0.4662 T22: 0.7828 REMARK 3 T33: 0.4099 T12: -0.3036 REMARK 3 T13: -0.0370 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: 0.5980 L22: 2.2125 REMARK 3 L33: 1.2673 L12: 0.5608 REMARK 3 L13: 0.2636 L23: 0.1856 REMARK 3 S TENSOR REMARK 3 S11: 0.2307 S12: -0.4799 S13: 0.0248 REMARK 3 S21: 0.0311 S22: -0.3569 S23: -0.0987 REMARK 3 S31: -0.0931 S32: 0.0109 S33: 0.1137 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 343:421) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1540 -3.6183 22.6598 REMARK 3 T TENSOR REMARK 3 T11: 0.3706 T22: 0.5120 REMARK 3 T33: 0.3608 T12: -0.1552 REMARK 3 T13: -0.0038 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.2910 L22: 1.4977 REMARK 3 L33: 1.1263 L12: 0.9136 REMARK 3 L13: 0.1093 L23: 0.2569 REMARK 3 S TENSOR REMARK 3 S11: 0.1197 S12: -0.1883 S13: 0.0977 REMARK 3 S21: -0.0014 S22: -0.0964 S23: -0.2151 REMARK 3 S31: -0.1585 S32: 0.2723 S33: -0.0120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011275. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9163 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24564 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.073 REMARK 200 RESOLUTION RANGE LOW (A) : 45.736 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65600 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: OUR OWN MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML PROTEIN IN 10 MM HEPES, 150 MM REMARK 280 NABR, PH 7.5, WAS MIXED WITH EQUAL VOLUME RESERVOIR SOLUTION REMARK 280 (200 MM POTASSIUM SODIUM TARTRATE TETRAHYDRATE, 180 MM NDSB-201, REMARK 280 12% POLYETHYLENE GLYCOL 1500, AND 10% GLYCERINE), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.42900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 154.85800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 154.85800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.42900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 PHE A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 ALA A 19 REMARK 465 ASP A 20 REMARK 465 GLU A 21 REMARK 465 PRO A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 85 REMARK 465 LEU A 86 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 130.97 -176.61 REMARK 500 ALA A 140 -127.34 -102.42 REMARK 500 ASP A 151 -146.50 -126.67 REMARK 500 LEU A 175 73.43 21.92 REMARK 500 SER A 179 -177.25 -170.50 REMARK 500 VAL A 211 122.49 -175.59 REMARK 500 SER A 381 146.57 86.35 REMARK 500 TRP A 388 -72.85 -87.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6JKZ RELATED DB: PDB DBREF1 6JL0 A 2 417 UNP A0A2S3SYP4_VIBVL DBREF2 6JL0 A A0A2S3SYP4 2 417 SEQADV 6JL0 MET A 0 UNP A0A2S3SYP INITIATING METHIONINE SEQADV 6JL0 GLY A 1 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JL0 HIS A 418 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JL0 HIS A 419 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JL0 HIS A 420 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JL0 HIS A 421 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JL0 HIS A 422 UNP A0A2S3SYP EXPRESSION TAG SEQADV 6JL0 HIS A 423 UNP A0A2S3SYP EXPRESSION TAG SEQRES 1 A 424 MET GLY LYS LYS ILE THR ILE LEU LEU GLY ALA LEU LEU SEQRES 2 A 424 PRO PHE THR SER ALA VAL ALA ASP GLU PRO ALA LEU SER SEQRES 3 A 424 PRO GLU ALA ILE THR SER ALA GLN VAL PHE SER THR GLN SEQRES 4 A 424 SER LYS GLU THR TYR THR TYR VAL ARG CYS TRP TYR ARG SEQRES 5 A 424 THR GLY ASN SER HIS ASP GLU SER ALA THR ASP TRP GLU SEQRES 6 A 424 TRP ALA GLU ASN PRO ASP GLY SER TYR PHE THR ILE ASP SEQRES 7 A 424 GLY TYR TRP TRP SER SER VAL ARG LEU LYS ASN MET PHE SEQRES 8 A 424 TYR THR ASN THR SER GLN ASN VAL ILE LYS GLN ARG CYS SEQRES 9 A 424 GLU GLU THR LEU GLY VAL THR HIS ASP ALA ALA ASP ILE SEQRES 10 A 424 THR TYR PHE ALA ALA ASP ASN ARG TRP SER TYR ASN HIS SEQRES 11 A 424 THR ILE TRP THR ASN ASP PRO VAL MET GLN ALA ASP GLN SEQRES 12 A 424 ILE ASN LYS ILE VAL ALA PHE GLY ASP SER LEU SER ASP SEQRES 13 A 424 THR GLY ASN ILE PHE ASN ALA ALA GLN TRP ARG PHE PRO SEQRES 14 A 424 ASN PRO ASP THR TRP PHE LEU GLY HIS PHE SER ASN GLY SEQRES 15 A 424 PHE VAL TRP THR GLU TYR ILE ALA GLN ALA LYS LYS LEU SEQRES 16 A 424 PRO LEU TYR ASN TRP ALA VAL GLY GLY ALA ALA GLY SER SEQRES 17 A 424 ASN GLN TYR VAL ALA LEU THR GLY VAL LYS ASP GLN VAL SEQRES 18 A 424 LEU SER TYR LEU THR TYR ALA LYS MET ALA LYS ASN TYR SEQRES 19 A 424 LYS PRO GLU ASN THR LEU PHE THR LEU GLU PHE GLY LEU SEQRES 20 A 424 ASN ASP PHE MET ASN TYR ASN ARG GLU VAL VAL ASP VAL SEQRES 21 A 424 LYS THR ASP PHE SER THR ALA LEU ILE LYS LEU THR ASP SEQRES 22 A 424 ALA GLY ALA LYS ASN ILE MET LEU MET THR LEU PRO ASP SEQRES 23 A 424 ALA THR LYS ALA PRO GLN PHE LYS TYR SER THR GLN ALA SEQRES 24 A 424 GLU ILE GLU LYS VAL ARG ALA LYS ILE VAL GLU PHE ASN SEQRES 25 A 424 GLU PHE ILE LYS ALA GLN ALA ALA PHE TYR ILE ILE GLN SEQRES 26 A 424 GLY TYR ASN ILE THR LEU TYR ASP THR HIS GLY LEU PHE SEQRES 27 A 424 GLU GLN LEU THR GLN ASN PRO GLN GLN HIS GLY PHE VAL SEQRES 28 A 424 ASN ALA SER ASP ALA CYS LEU ASN ILE ASN ARG ALA SER SEQRES 29 A 424 SER ALA ASP TYR LEU TYR SER HIS SER LEU THR ASN GLU SEQRES 30 A 424 CYS ALA THR HIS SER SER ASP LYS TYR VAL PHE TRP GLY SEQRES 31 A 424 VAL THR HIS PRO THR THR ALA VAL HIS LYS TYR ILE ALA SEQRES 32 A 424 GLU LYS MET LEU ALA PRO GLY ALA GLY MET GLN ARG PHE SEQRES 33 A 424 ASN PHE HIS HIS HIS HIS HIS HIS HET BR A 501 1 HETNAM BR BROMIDE ION FORMUL 2 BR BR 1- FORMUL 3 HOH *117(H2 O) HELIX 1 AA1 SER A 25 ILE A 29 5 5 HELIX 2 AA2 THR A 30 LYS A 40 1 11 HELIX 3 AA3 SER A 95 GLY A 108 1 14 HELIX 4 AA4 GLY A 157 ALA A 163 1 7 HELIX 5 AA5 VAL A 183 LYS A 192 1 10 HELIX 6 AA6 GLY A 206 TYR A 210 5 5 HELIX 7 AA7 GLY A 215 MET A 229 1 15 HELIX 8 AA8 LYS A 234 GLU A 236 5 3 HELIX 9 AA9 GLY A 245 ASN A 251 1 7 HELIX 10 AB1 GLU A 255 ALA A 273 1 19 HELIX 11 AB2 ASP A 285 SER A 295 5 11 HELIX 12 AB3 THR A 296 GLN A 324 1 29 HELIX 13 AB4 ASP A 332 ASN A 343 1 12 HELIX 14 AB5 PRO A 344 GLY A 348 5 5 HELIX 15 AB6 SER A 363 TYR A 369 5 7 HELIX 16 AB7 THR A 374 SER A 381 1 8 HELIX 17 AB8 THR A 394 ALA A 407 1 14 HELIX 18 AB9 GLY A 411 PHE A 415 5 5 SHEET 1 AA1 3 THR A 61 TRP A 65 0 SHEET 2 AA1 3 THR A 42 ARG A 51 -1 N CYS A 48 O GLU A 64 SHEET 3 AA1 3 THR A 117 ALA A 121 -1 O THR A 117 N TRP A 49 SHEET 1 AA2 5 THR A 61 TRP A 65 0 SHEET 2 AA2 5 THR A 42 ARG A 51 -1 N CYS A 48 O GLU A 64 SHEET 3 AA2 5 THR A 75 TRP A 81 -1 O GLY A 78 N THR A 42 SHEET 4 AA2 5 MET A 89 THR A 92 -1 O TYR A 91 N TYR A 79 SHEET 5 AA2 5 ILE A 131 THR A 133 1 O TRP A 132 N PHE A 90 SHEET 1 AA3 5 LEU A 196 ASN A 198 0 SHEET 2 AA3 5 LYS A 145 PHE A 149 1 N ILE A 146 O TYR A 197 SHEET 3 AA3 5 THR A 238 LEU A 242 1 O LEU A 239 N LYS A 145 SHEET 4 AA3 5 ASN A 277 MET A 281 1 O MET A 279 N PHE A 240 SHEET 5 AA3 5 ASN A 327 TYR A 331 1 O ASN A 327 N ILE A 278 SHEET 1 AA4 2 ASN A 351 ALA A 355 0 SHEET 2 AA4 2 TYR A 385 PHE A 387 1 O VAL A 386 N ASN A 351 SSBOND 1 CYS A 48 CYS A 103 1555 1555 2.09 SSBOND 2 CYS A 356 CYS A 377 1555 1555 2.02 CISPEP 1 PHE A 167 PRO A 168 0 -6.69 SITE 1 AC1 3 TRP A 173 GLY A 389 HIS A 392 CRYST1 53.865 53.865 232.287 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018565 0.010718 0.000000 0.00000 SCALE2 0.000000 0.021437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004305 0.00000