data_6JND # _entry.id 6JND # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JND pdb_00006jnd 10.2210/pdb6jnd/pdb WWPDB D_1300011406 ? ? EMDB EMD-9848 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-02-12 2 'Structure model' 1 1 2020-09-02 3 'Structure model' 1 2 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JND _pdbx_database_status.recvd_initial_deposition_date 2019-03-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '6JN9 contains the same protein in a different conformation.' 6JN9 unspecified PDB '6JNA contains the same protein in a different conformation.' 6JNA unspecified PDB '6JNC contains the same protein in a different conformation.' 6JNC unspecified EMDB . EMD-9848 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Oide, M.' 1 ? 'Kato, T.' 2 ? 'Oroguchi, T.' 3 ? 'Nakasako, M.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Febs J.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1742-464X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 287 _citation.language ? _citation.page_first 3472 _citation.page_last 3493 _citation.title 'Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1111/febs.15224 _citation.pdbx_database_id_PubMed 31976609 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Oide, M.' 1 ? primary 'Kato, T.' 2 ? primary 'Oroguchi, T.' 3 ? primary 'Nakasako, M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Glutamate dehydrogenase' 46758.477 1 1.4.1.3 ? ? ? 2 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GDH # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVEIDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETL STVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEY ETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVV AVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANG PVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAY VVAVSRVYQAMKDRGWVKK ; _entity_poly.pdbx_seq_one_letter_code_can ;MVEIDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETL STVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEY ETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVV AVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANG PVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAY VVAVSRVYQAMKDRGWVKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _pdbx_entity_nonpoly.comp_id TRS # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 GLU n 1 4 ILE n 1 5 ASP n 1 6 PRO n 1 7 PHE n 1 8 GLU n 1 9 MET n 1 10 ALA n 1 11 VAL n 1 12 LYS n 1 13 GLN n 1 14 LEU n 1 15 GLU n 1 16 ARG n 1 17 ALA n 1 18 ALA n 1 19 GLN n 1 20 TYR n 1 21 MET n 1 22 ASP n 1 23 ILE n 1 24 SER n 1 25 GLU n 1 26 GLU n 1 27 ALA n 1 28 LEU n 1 29 GLU n 1 30 TRP n 1 31 LEU n 1 32 LYS n 1 33 LYS n 1 34 PRO n 1 35 MET n 1 36 ARG n 1 37 ILE n 1 38 VAL n 1 39 GLU n 1 40 VAL n 1 41 SER n 1 42 VAL n 1 43 PRO n 1 44 ILE n 1 45 GLU n 1 46 MET n 1 47 ASP n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 VAL n 1 52 LYS n 1 53 VAL n 1 54 PHE n 1 55 THR n 1 56 GLY n 1 57 PHE n 1 58 ARG n 1 59 VAL n 1 60 GLN n 1 61 HIS n 1 62 ASN n 1 63 TRP n 1 64 ALA n 1 65 ARG n 1 66 GLY n 1 67 PRO n 1 68 THR n 1 69 LYS n 1 70 GLY n 1 71 GLY n 1 72 ILE n 1 73 ARG n 1 74 TRP n 1 75 HIS n 1 76 PRO n 1 77 ALA n 1 78 GLU n 1 79 THR n 1 80 LEU n 1 81 SER n 1 82 THR n 1 83 VAL n 1 84 LYS n 1 85 ALA n 1 86 LEU n 1 87 ALA n 1 88 THR n 1 89 TRP n 1 90 MET n 1 91 THR n 1 92 TRP n 1 93 LYS n 1 94 VAL n 1 95 ALA n 1 96 VAL n 1 97 VAL n 1 98 ASP n 1 99 LEU n 1 100 PRO n 1 101 TYR n 1 102 GLY n 1 103 GLY n 1 104 GLY n 1 105 LYS n 1 106 GLY n 1 107 GLY n 1 108 ILE n 1 109 ILE n 1 110 VAL n 1 111 ASN n 1 112 PRO n 1 113 LYS n 1 114 GLU n 1 115 LEU n 1 116 SER n 1 117 GLU n 1 118 ARG n 1 119 GLU n 1 120 GLN n 1 121 GLU n 1 122 ARG n 1 123 LEU n 1 124 ALA n 1 125 ARG n 1 126 ALA n 1 127 TYR n 1 128 ILE n 1 129 ARG n 1 130 ALA n 1 131 VAL n 1 132 TYR n 1 133 ASP n 1 134 VAL n 1 135 ILE n 1 136 GLY n 1 137 PRO n 1 138 TRP n 1 139 THR n 1 140 ASP n 1 141 ILE n 1 142 PRO n 1 143 ALA n 1 144 PRO n 1 145 ASP n 1 146 VAL n 1 147 TYR n 1 148 THR n 1 149 ASN n 1 150 PRO n 1 151 LYS n 1 152 ILE n 1 153 MET n 1 154 GLY n 1 155 TRP n 1 156 MET n 1 157 MET n 1 158 ASP n 1 159 GLU n 1 160 TYR n 1 161 GLU n 1 162 THR n 1 163 ILE n 1 164 MET n 1 165 ARG n 1 166 ARG n 1 167 LYS n 1 168 GLY n 1 169 PRO n 1 170 ALA n 1 171 PHE n 1 172 GLY n 1 173 VAL n 1 174 ILE n 1 175 THR n 1 176 GLY n 1 177 LYS n 1 178 PRO n 1 179 LEU n 1 180 SER n 1 181 ILE n 1 182 GLY n 1 183 GLY n 1 184 SER n 1 185 LEU n 1 186 GLY n 1 187 ARG n 1 188 GLY n 1 189 THR n 1 190 ALA n 1 191 THR n 1 192 ALA n 1 193 GLN n 1 194 GLY n 1 195 ALA n 1 196 ILE n 1 197 PHE n 1 198 THR n 1 199 ILE n 1 200 ARG n 1 201 GLU n 1 202 ALA n 1 203 ALA n 1 204 LYS n 1 205 ALA n 1 206 LEU n 1 207 GLY n 1 208 ILE n 1 209 ASP n 1 210 LEU n 1 211 LYS n 1 212 GLY n 1 213 LYS n 1 214 LYS n 1 215 ILE n 1 216 ALA n 1 217 VAL n 1 218 GLN n 1 219 GLY n 1 220 TYR n 1 221 GLY n 1 222 ASN n 1 223 ALA n 1 224 GLY n 1 225 TYR n 1 226 TYR n 1 227 THR n 1 228 ALA n 1 229 LYS n 1 230 LEU n 1 231 ALA n 1 232 LYS n 1 233 GLU n 1 234 GLN n 1 235 LEU n 1 236 GLY n 1 237 MET n 1 238 THR n 1 239 VAL n 1 240 VAL n 1 241 ALA n 1 242 VAL n 1 243 SER n 1 244 ASP n 1 245 SER n 1 246 ARG n 1 247 GLY n 1 248 GLY n 1 249 ILE n 1 250 TYR n 1 251 ASN n 1 252 PRO n 1 253 ASP n 1 254 GLY n 1 255 LEU n 1 256 ASP n 1 257 PRO n 1 258 ASP n 1 259 GLU n 1 260 VAL n 1 261 LEU n 1 262 LYS n 1 263 TRP n 1 264 LYS n 1 265 ARG n 1 266 GLU n 1 267 HIS n 1 268 GLY n 1 269 SER n 1 270 VAL n 1 271 LYS n 1 272 ASP n 1 273 PHE n 1 274 PRO n 1 275 GLY n 1 276 ALA n 1 277 THR n 1 278 ASN n 1 279 ILE n 1 280 THR n 1 281 ASN n 1 282 GLU n 1 283 GLU n 1 284 LEU n 1 285 LEU n 1 286 GLU n 1 287 LEU n 1 288 GLU n 1 289 VAL n 1 290 ASP n 1 291 VAL n 1 292 LEU n 1 293 ALA n 1 294 PRO n 1 295 ALA n 1 296 ALA n 1 297 ILE n 1 298 GLU n 1 299 GLU n 1 300 VAL n 1 301 ILE n 1 302 THR n 1 303 GLU n 1 304 LYS n 1 305 ASN n 1 306 ALA n 1 307 ASP n 1 308 ASN n 1 309 ILE n 1 310 LYS n 1 311 ALA n 1 312 LYS n 1 313 ILE n 1 314 VAL n 1 315 ALA n 1 316 GLU n 1 317 VAL n 1 318 ALA n 1 319 ASN n 1 320 GLY n 1 321 PRO n 1 322 VAL n 1 323 THR n 1 324 PRO n 1 325 GLU n 1 326 ALA n 1 327 ASP n 1 328 ASP n 1 329 ILE n 1 330 LEU n 1 331 ARG n 1 332 GLU n 1 333 LYS n 1 334 GLY n 1 335 ILE n 1 336 LEU n 1 337 GLN n 1 338 ILE n 1 339 PRO n 1 340 ASP n 1 341 PHE n 1 342 LEU n 1 343 CYS n 1 344 ASN n 1 345 ALA n 1 346 GLY n 1 347 GLY n 1 348 VAL n 1 349 THR n 1 350 VAL n 1 351 SER n 1 352 TYR n 1 353 PHE n 1 354 GLU n 1 355 TRP n 1 356 VAL n 1 357 GLN n 1 358 ASN n 1 359 ILE n 1 360 ASN n 1 361 GLY n 1 362 TYR n 1 363 TYR n 1 364 TRP n 1 365 THR n 1 366 GLU n 1 367 GLU n 1 368 GLU n 1 369 VAL n 1 370 ARG n 1 371 GLU n 1 372 LYS n 1 373 LEU n 1 374 ASP n 1 375 LYS n 1 376 LYS n 1 377 MET n 1 378 THR n 1 379 LYS n 1 380 ALA n 1 381 PHE n 1 382 TRP n 1 383 GLU n 1 384 VAL n 1 385 TYR n 1 386 ASN n 1 387 THR n 1 388 HIS n 1 389 LYS n 1 390 ASP n 1 391 LYS n 1 392 ASN n 1 393 ILE n 1 394 HIS n 1 395 MET n 1 396 ARG n 1 397 ASP n 1 398 ALA n 1 399 ALA n 1 400 TYR n 1 401 VAL n 1 402 VAL n 1 403 ALA n 1 404 VAL n 1 405 SER n 1 406 ARG n 1 407 VAL n 1 408 TYR n 1 409 GLN n 1 410 ALA n 1 411 MET n 1 412 LYS n 1 413 ASP n 1 414 ARG n 1 415 GLY n 1 416 TRP n 1 417 VAL n 1 418 LYS n 1 419 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 419 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'gdhA, gdh' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermococcus profundus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 49899 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 MET 9 9 9 MET MET A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 ASP 22 22 22 ASP ALA A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 HIS 75 75 75 HIS HIS A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 MET 90 90 90 MET MET A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ASP 98 98 98 ASP ASP A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 ILE 109 109 109 ILE ILE A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 ARG 129 129 129 ARG ARG A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 TRP 138 138 138 TRP TRP A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 PRO 142 142 142 PRO PRO A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 PRO 144 144 144 PRO PRO A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 MET 153 153 153 MET MET A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 TRP 155 155 155 TRP TRP A . n A 1 156 MET 156 156 156 MET MET A . n A 1 157 MET 157 157 157 MET MET A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 THR 162 162 162 THR THR A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 MET 164 164 164 MET MET A . n A 1 165 ARG 165 165 165 ARG ARG A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 PHE 171 171 171 PHE PHE A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 SER 180 180 180 SER SER A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 GLN 193 193 193 GLN GLN A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 LYS 204 204 204 LYS LYS A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 GLY 207 207 207 GLY GLY A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 LYS 211 211 211 LYS LYS A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 LYS 214 214 214 LYS LYS A . n A 1 215 ILE 215 215 215 ILE ILE A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 GLN 218 218 218 GLN GLN A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 TYR 220 220 220 TYR TYR A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 ASN 222 222 222 ASN ASN A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 TYR 225 225 225 TYR TYR A . n A 1 226 TYR 226 226 226 TYR TYR A . n A 1 227 THR 227 227 227 THR THR A . n A 1 228 ALA 228 228 228 ALA ALA A . n A 1 229 LYS 229 229 229 LYS LYS A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 ALA 231 231 231 ALA ALA A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 GLU 233 233 233 GLU GLU A . n A 1 234 GLN 234 234 234 GLN GLN A . n A 1 235 LEU 235 235 235 LEU LEU A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 MET 237 237 237 MET MET A . n A 1 238 THR 238 238 238 THR THR A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 SER 243 243 243 SER SER A . n A 1 244 ASP 244 244 244 ASP ASP A . n A 1 245 SER 245 245 245 SER SER A . n A 1 246 ARG 246 246 246 ARG ARG A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 GLY 248 248 248 GLY GLY A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 TYR 250 250 250 TYR TYR A . n A 1 251 ASN 251 251 251 ASN ASN A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 ASP 253 253 253 ASP ASP A . n A 1 254 GLY 254 254 254 GLY GLY A . n A 1 255 LEU 255 255 255 LEU LEU A . n A 1 256 ASP 256 256 256 ASP ASP A . n A 1 257 PRO 257 257 257 PRO PRO A . n A 1 258 ASP 258 258 258 ASP ASP A . n A 1 259 GLU 259 259 259 GLU GLU A . n A 1 260 VAL 260 260 260 VAL VAL A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 LYS 262 262 262 LYS LYS A . n A 1 263 TRP 263 263 263 TRP TRP A . n A 1 264 LYS 264 264 264 LYS LYS A . n A 1 265 ARG 265 265 265 ARG ARG A . n A 1 266 GLU 266 266 266 GLU GLU A . n A 1 267 HIS 267 267 267 HIS HIS A . n A 1 268 GLY 268 268 268 GLY GLY A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 VAL 270 270 270 VAL VAL A . n A 1 271 LYS 271 271 271 LYS LYS A . n A 1 272 ASP 272 272 272 ASP ASP A . n A 1 273 PHE 273 273 273 PHE PHE A . n A 1 274 PRO 274 274 274 PRO PRO A . n A 1 275 GLY 275 275 275 GLY GLY A . n A 1 276 ALA 276 276 276 ALA ALA A . n A 1 277 THR 277 277 277 THR THR A . n A 1 278 ASN 278 278 278 ASN ASN A . n A 1 279 ILE 279 279 279 ILE ILE A . n A 1 280 THR 280 280 280 THR THR A . n A 1 281 ASN 281 281 281 ASN ASN A . n A 1 282 GLU 282 282 282 GLU GLU A . n A 1 283 GLU 283 283 283 GLU GLU A . n A 1 284 LEU 284 284 284 LEU LEU A . n A 1 285 LEU 285 285 285 LEU LEU A . n A 1 286 GLU 286 286 286 GLU GLU A . n A 1 287 LEU 287 287 287 LEU LEU A . n A 1 288 GLU 288 288 288 GLU GLU A . n A 1 289 VAL 289 289 289 VAL VAL A . n A 1 290 ASP 290 290 290 ASP ASP A . n A 1 291 VAL 291 291 291 VAL VAL A . n A 1 292 LEU 292 292 292 LEU LEU A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 PRO 294 294 294 PRO PRO A . n A 1 295 ALA 295 295 295 ALA ALA A . n A 1 296 ALA 296 296 296 ALA ALA A . n A 1 297 ILE 297 297 297 ILE ILE A . n A 1 298 GLU 298 298 298 GLU GLU A . n A 1 299 GLU 299 299 299 GLU GLU A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 ILE 301 301 301 ILE ILE A . n A 1 302 THR 302 302 302 THR THR A . n A 1 303 GLU 303 303 303 GLU GLU A . n A 1 304 LYS 304 304 304 LYS LYS A . n A 1 305 ASN 305 305 305 ASN ASN A . n A 1 306 ALA 306 306 306 ALA ALA A . n A 1 307 ASP 307 307 307 ASP ASP A . n A 1 308 ASN 308 308 308 ASN ASN A . n A 1 309 ILE 309 309 309 ILE ILE A . n A 1 310 LYS 310 310 310 LYS LYS A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 LYS 312 312 312 LYS LYS A . n A 1 313 ILE 313 313 313 ILE ILE A . n A 1 314 VAL 314 314 314 VAL VAL A . n A 1 315 ALA 315 315 315 ALA ALA A . n A 1 316 GLU 316 316 316 GLU GLU A . n A 1 317 VAL 317 317 317 VAL VAL A . n A 1 318 ALA 318 318 318 ALA ALA A . n A 1 319 ASN 319 319 319 ASN ASN A . n A 1 320 GLY 320 320 320 GLY GLY A . n A 1 321 PRO 321 321 321 PRO PRO A . n A 1 322 VAL 322 322 322 VAL VAL A . n A 1 323 THR 323 323 323 THR THR A . n A 1 324 PRO 324 324 324 PRO PRO A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 ALA 326 326 326 ALA ALA A . n A 1 327 ASP 327 327 327 ASP ASP A . n A 1 328 ASP 328 328 328 ASP ASP A . n A 1 329 ILE 329 329 329 ILE ILE A . n A 1 330 LEU 330 330 330 LEU LEU A . n A 1 331 ARG 331 331 331 ARG ARG A . n A 1 332 GLU 332 332 332 GLU GLU A . n A 1 333 LYS 333 333 333 LYS LYS A . n A 1 334 GLY 334 334 334 GLY GLY A . n A 1 335 ILE 335 335 335 ILE ILE A . n A 1 336 LEU 336 336 336 LEU LEU A . n A 1 337 GLN 337 337 337 GLN GLN A . n A 1 338 ILE 338 338 338 ILE ILE A . n A 1 339 PRO 339 339 339 PRO PRO A . n A 1 340 ASP 340 340 340 ASP ASP A . n A 1 341 PHE 341 341 341 PHE PHE A . n A 1 342 LEU 342 342 342 LEU LEU A . n A 1 343 CYS 343 343 343 CYS CYS A . n A 1 344 ASN 344 344 344 ASN ASN A . n A 1 345 ALA 345 345 345 ALA ALA A . n A 1 346 GLY 346 346 346 GLY GLY A . n A 1 347 GLY 347 347 347 GLY GLY A . n A 1 348 VAL 348 348 348 VAL VAL A . n A 1 349 THR 349 349 349 THR THR A . n A 1 350 VAL 350 350 350 VAL VAL A . n A 1 351 SER 351 351 351 SER SER A . n A 1 352 TYR 352 352 352 TYR TYR A . n A 1 353 PHE 353 353 353 PHE PHE A . n A 1 354 GLU 354 354 354 GLU GLU A . n A 1 355 TRP 355 355 355 TRP TRP A . n A 1 356 VAL 356 356 356 VAL VAL A . n A 1 357 GLN 357 357 357 GLN GLN A . n A 1 358 ASN 358 358 358 ASN ASN A . n A 1 359 ILE 359 359 359 ILE ILE A . n A 1 360 ASN 360 360 360 ASN ASN A . n A 1 361 GLY 361 361 361 GLY GLY A . n A 1 362 TYR 362 362 362 TYR TYR A . n A 1 363 TYR 363 363 363 TYR TYR A . n A 1 364 TRP 364 364 364 TRP TRP A . n A 1 365 THR 365 365 365 THR THR A . n A 1 366 GLU 366 366 366 GLU GLU A . n A 1 367 GLU 367 367 367 GLU GLU A . n A 1 368 GLU 368 368 368 GLU GLU A . n A 1 369 VAL 369 369 369 VAL VAL A . n A 1 370 ARG 370 370 370 ARG ARG A . n A 1 371 GLU 371 371 371 GLU GLU A . n A 1 372 LYS 372 372 372 LYS LYS A . n A 1 373 LEU 373 373 373 LEU LEU A . n A 1 374 ASP 374 374 374 ASP ASP A . n A 1 375 LYS 375 375 375 LYS LYS A . n A 1 376 LYS 376 376 376 LYS LYS A . n A 1 377 MET 377 377 377 MET MET A . n A 1 378 THR 378 378 378 THR THR A . n A 1 379 LYS 379 379 379 LYS LYS A . n A 1 380 ALA 380 380 380 ALA ALA A . n A 1 381 PHE 381 381 381 PHE PHE A . n A 1 382 TRP 382 382 382 TRP TRP A . n A 1 383 GLU 383 383 383 GLU GLU A . n A 1 384 VAL 384 384 384 VAL VAL A . n A 1 385 TYR 385 385 385 TYR TYR A . n A 1 386 ASN 386 386 386 ASN ASN A . n A 1 387 THR 387 387 387 THR THR A . n A 1 388 HIS 388 388 388 HIS HIS A . n A 1 389 LYS 389 389 389 LYS LYS A . n A 1 390 ASP 390 390 390 ASP ASP A . n A 1 391 LYS 391 391 391 LYS LYS A . n A 1 392 ASN 392 392 392 ASN ASN A . n A 1 393 ILE 393 393 393 ILE ILE A . n A 1 394 HIS 394 394 394 HIS HIS A . n A 1 395 MET 395 395 395 MET MET A . n A 1 396 ARG 396 396 396 ARG ARG A . n A 1 397 ASP 397 397 397 ASP ASP A . n A 1 398 ALA 398 398 398 ALA ALA A . n A 1 399 ALA 399 399 399 ALA ALA A . n A 1 400 TYR 400 400 400 TYR TYR A . n A 1 401 VAL 401 401 401 VAL VAL A . n A 1 402 VAL 402 402 402 VAL VAL A . n A 1 403 ALA 403 403 403 ALA ALA A . n A 1 404 VAL 404 404 404 VAL VAL A . n A 1 405 SER 405 405 405 SER SER A . n A 1 406 ARG 406 406 406 ARG ARG A . n A 1 407 VAL 407 407 407 VAL VAL A . n A 1 408 TYR 408 408 408 TYR TYR A . n A 1 409 GLN 409 409 409 GLN GLN A . n A 1 410 ALA 410 410 410 ALA ALA A . n A 1 411 MET 411 411 411 MET MET A . n A 1 412 LYS 412 412 412 LYS LYS A . n A 1 413 ASP 413 413 413 ASP ASP A . n A 1 414 ARG 414 414 414 ARG ARG A . n A 1 415 GLY 415 415 415 GLY GLY A . n A 1 416 TRP 416 416 416 TRP TRP A . n A 1 417 VAL 417 417 417 VAL VAL A . n A 1 418 LYS 418 418 418 LYS LYS A . n A 1 419 LYS 419 419 419 LYS LYS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id TRS _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 901 _pdbx_nonpoly_scheme.pdb_mon_id TRS _pdbx_nonpoly_scheme.auth_mon_id TRS _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 22 ? CG ? A ASP 22 CG 2 1 Y 1 A ASP 22 ? OD1 ? A ASP 22 OD1 3 1 Y 1 A ASP 22 ? OD2 ? A ASP 22 OD2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? 'Paul D. Adams' pdadams@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? phenix.real_space_refine ? ? program 1.14_3260 1 ? refinement ? ? 'Paul D. Adams' pdadams@lbl.gov ? ? ? ? Python/C++ https://www.phenix-online.org/ ? PHENIX ? ? program 1.14_3260 2 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6JND _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.0 _cell.length_a_esd ? _cell.length_b 1.0 _cell.length_b_esd ? _cell.length_c 1.0 _cell.length_c_esd ? _cell.volume 7334503.680 _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JND _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JND _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JND _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0057 ? 3366 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.6222 ? 4562 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.0496 ? 497 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.0072 ? 584 ? f_plane_restr ? ? 'ELECTRON MICROSCOPY' ? 13.4042 ? 2017 ? f_dihedral_angle_d ? ? # _struct.entry_id 6JND _struct.title 'Cryo-EM structure of glutamate dehydrogenase from Thermococcus profundus' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JND _struct_keywords.text 'enzyme, multi-domain protein, OXIDOREDUCTASE' _struct_keywords.pdbx_keywords OXIDOREDUCTASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DHE3_THEPR _struct_ref.pdbx_db_accession O74024 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVEIDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETL STVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEY ETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVV AVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANG PVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAY VVAVSRVYQAMKDRGWVKK ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6JND _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 419 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O74024 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 419 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 419 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 320 ? 1 MORE 4 ? 1 'SSA (A^2)' 19020 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support SAXS _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 5 ? ALA A 17 ? ASP A 5 ALA A 17 1 ? 13 HELX_P HELX_P2 AA2 THR A 79 ? ALA A 95 ? THR A 79 ALA A 95 1 ? 17 HELX_P HELX_P3 AA3 ASN A 111 ? LEU A 115 ? ASN A 111 LEU A 115 5 ? 5 HELX_P HELX_P4 AA4 SER A 116 ? ARG A 129 ? SER A 116 ARG A 129 1 ? 14 HELX_P HELX_P5 AA5 VAL A 131 ? ILE A 135 ? VAL A 131 ILE A 135 5 ? 5 HELX_P HELX_P6 AA6 ASN A 149 ? ARG A 165 ? ASN A 149 ARG A 165 1 ? 17 HELX_P HELX_P7 AA7 PRO A 169 ? VAL A 173 ? PRO A 169 VAL A 173 5 ? 5 HELX_P HELX_P8 AA8 THR A 189 ? GLY A 207 ? THR A 189 GLY A 207 1 ? 19 HELX_P HELX_P9 AA9 GLY A 221 ? GLN A 234 ? GLY A 221 GLN A 234 1 ? 14 HELX_P HELX_P10 AB1 ASP A 256 ? ARG A 265 ? ASP A 256 ARG A 265 1 ? 10 HELX_P HELX_P11 AB2 THR A 280 ? GLU A 286 ? THR A 280 GLU A 286 1 ? 7 HELX_P HELX_P12 AB3 ALA A 326 ? GLU A 332 ? ALA A 326 GLU A 332 1 ? 7 HELX_P HELX_P13 AB4 PRO A 339 ? ASN A 344 ? PRO A 339 ASN A 344 1 ? 6 HELX_P HELX_P14 AB5 ALA A 345 ? GLY A 361 ? ALA A 345 GLY A 361 1 ? 17 HELX_P HELX_P15 AB6 THR A 365 ? ASN A 392 ? THR A 365 ASN A 392 1 ? 28 HELX_P HELX_P16 AB7 HIS A 394 ? LYS A 412 ? HIS A 394 LYS A 412 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA3 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 36 ? GLU A 45 ? ARG A 36 GLU A 45 AA1 2 VAL A 51 ? GLN A 60 ? VAL A 51 GLN A 60 AA1 3 GLY A 104 ? ILE A 108 ? GLY A 104 ILE A 108 AA1 4 ILE A 72 ? TRP A 74 ? ILE A 72 TRP A 74 AA2 1 THR A 68 ? LYS A 69 ? THR A 68 LYS A 69 AA2 2 ASP A 140 ? ILE A 141 ? ASP A 140 ILE A 141 AA3 1 GLY A 248 ? TYR A 250 ? GLY A 248 TYR A 250 AA3 2 THR A 238 ? SER A 243 ? THR A 238 SER A 243 AA3 3 LYS A 214 ? GLN A 218 ? LYS A 214 GLN A 218 AA3 4 VAL A 291 ? PRO A 294 ? VAL A 291 PRO A 294 AA3 5 ILE A 313 ? VAL A 314 ? ILE A 313 VAL A 314 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 42 ? N VAL A 42 O PHE A 54 ? O PHE A 54 AA1 2 3 N PHE A 57 ? N PHE A 57 O GLY A 107 ? O GLY A 107 AA1 3 4 O GLY A 106 ? O GLY A 106 N ARG A 73 ? N ARG A 73 AA2 1 2 N THR A 68 ? N THR A 68 O ILE A 141 ? O ILE A 141 AA3 1 2 O ILE A 249 ? O ILE A 249 N VAL A 242 ? N VAL A 242 AA3 2 3 O THR A 238 ? O THR A 238 N ILE A 215 ? N ILE A 215 AA3 3 4 N ALA A 216 ? N ALA A 216 O ALA A 293 ? O ALA A 293 AA3 4 5 N LEU A 292 ? N LEU A 292 O ILE A 313 ? O ILE A 313 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id TRS _struct_site.pdbx_auth_seq_id 901 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'binding site for residue TRS A 901' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ALA A 143 ? ALA A 143 . ? 1_555 ? 2 AC1 2 PRO A 144 ? PRO A 144 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 58 ? ? -161.24 115.00 2 1 TRP A 63 ? ? -99.24 35.61 3 1 ASP A 145 ? ? -149.75 -155.67 4 1 LYS A 167 ? ? -94.21 52.41 5 1 ALA A 295 ? ? -141.50 17.93 6 1 THR A 302 ? ? -126.37 -169.66 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_reconstruction.entry_id 6JND _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 97022 _em_3d_reconstruction.resolution 3.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'glutamate dehydrogenase' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 6JND _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'JEOL CRYO ARM 200' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6JND _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6JND _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TRS C C N N 345 TRS C1 C N N 346 TRS C2 C N N 347 TRS C3 C N N 348 TRS N N N N 349 TRS O1 O N N 350 TRS O2 O N N 351 TRS O3 O N N 352 TRS H11 H N N 353 TRS H12 H N N 354 TRS H21 H N N 355 TRS H22 H N N 356 TRS H31 H N N 357 TRS H32 H N N 358 TRS HN1 H N N 359 TRS HN2 H N N 360 TRS HN3 H N N 361 TRS HO1 H N N 362 TRS HO2 H N N 363 TRS HO3 H N N 364 TYR N N N N 365 TYR CA C N S 366 TYR C C N N 367 TYR O O N N 368 TYR CB C N N 369 TYR CG C Y N 370 TYR CD1 C Y N 371 TYR CD2 C Y N 372 TYR CE1 C Y N 373 TYR CE2 C Y N 374 TYR CZ C Y N 375 TYR OH O N N 376 TYR OXT O N N 377 TYR H H N N 378 TYR H2 H N N 379 TYR HA H N N 380 TYR HB2 H N N 381 TYR HB3 H N N 382 TYR HD1 H N N 383 TYR HD2 H N N 384 TYR HE1 H N N 385 TYR HE2 H N N 386 TYR HH H N N 387 TYR HXT H N N 388 VAL N N N N 389 VAL CA C N S 390 VAL C C N N 391 VAL O O N N 392 VAL CB C N N 393 VAL CG1 C N N 394 VAL CG2 C N N 395 VAL OXT O N N 396 VAL H H N N 397 VAL H2 H N N 398 VAL HA H N N 399 VAL HB H N N 400 VAL HG11 H N N 401 VAL HG12 H N N 402 VAL HG13 H N N 403 VAL HG21 H N N 404 VAL HG22 H N N 405 VAL HG23 H N N 406 VAL HXT H N N 407 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TRS C C1 sing N N 332 TRS C C2 sing N N 333 TRS C C3 sing N N 334 TRS C N sing N N 335 TRS C1 O1 sing N N 336 TRS C1 H11 sing N N 337 TRS C1 H12 sing N N 338 TRS C2 O2 sing N N 339 TRS C2 H21 sing N N 340 TRS C2 H22 sing N N 341 TRS C3 O3 sing N N 342 TRS C3 H31 sing N N 343 TRS C3 H32 sing N N 344 TRS N HN1 sing N N 345 TRS N HN2 sing N N 346 TRS N HN3 sing N N 347 TRS O1 HO1 sing N N 348 TRS O2 HO2 sing N N 349 TRS O3 HO3 sing N N 350 TYR N CA sing N N 351 TYR N H sing N N 352 TYR N H2 sing N N 353 TYR CA C sing N N 354 TYR CA CB sing N N 355 TYR CA HA sing N N 356 TYR C O doub N N 357 TYR C OXT sing N N 358 TYR CB CG sing N N 359 TYR CB HB2 sing N N 360 TYR CB HB3 sing N N 361 TYR CG CD1 doub Y N 362 TYR CG CD2 sing Y N 363 TYR CD1 CE1 sing Y N 364 TYR CD1 HD1 sing N N 365 TYR CD2 CE2 doub Y N 366 TYR CD2 HD2 sing N N 367 TYR CE1 CZ doub Y N 368 TYR CE1 HE1 sing N N 369 TYR CE2 CZ sing Y N 370 TYR CE2 HE2 sing N N 371 TYR CZ OH sing N N 372 TYR OH HH sing N N 373 TYR OXT HXT sing N N 374 VAL N CA sing N N 375 VAL N H sing N N 376 VAL N H2 sing N N 377 VAL CA C sing N N 378 VAL CA CB sing N N 379 VAL CA HA sing N N 380 VAL C O doub N N 381 VAL C OXT sing N N 382 VAL CB CG1 sing N N 383 VAL CB CG2 sing N N 384 VAL CB HB sing N N 385 VAL CG1 HG11 sing N N 386 VAL CG1 HG12 sing N N 387 VAL CG1 HG13 sing N N 388 VAL CG2 HG21 sing N N 389 VAL CG2 HG22 sing N N 390 VAL CG2 HG23 sing N N 391 VAL OXT HXT sing N N 392 # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature ? _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 49899 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Thermococcus profundus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 10 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 BASE (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name ? _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science' Japan jp13480214 1 'Japan Society for the Promotion of Science' Japan jp19204042 2 'Japan Society for the Promotion of Science' Japan jp22244054 3 'Japan Society for the Promotion of Science' Japan jp26800227 4 'Japan Society for the Promotion of Science' Japan jp17H04854 5 'Japan Society for the Promotion of Science' Japan 18J11653 6 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp15076210 7 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp20050030 8 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp22018027 9 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp23120525 10 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp25120725 11 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp15H01647 12 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp17H05891 13 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan jp26104535 14 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 6JND _atom_sites.fract_transf_matrix[1][1] 0.005155 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005155 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005131 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_