HEADER LYASE 27-MAR-19 6JPH TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF A MULTI-DOMAIN ALGINATE TITLE 2 LYASE DP0100 FROM THERMOPHILIC BACTERIUM DEFLUVIITALEA PHAPHYPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALGINATE LYASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEFLUVIITALEA PHAPHYPHILA; SOURCE 3 ORGANISM_TAXID: 1473580 KEYWDS ALPHA BARREL+BETA SANDWICH, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.Q.JI,S.R.DIX,A.AZIZ,S.E.SEDELNIKOVA,F.L.LI,D.W.RICE REVDAT 4 27-MAR-24 6JPH 1 HETSYN LINK REVDAT 3 29-JUL-20 6JPH 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 11-DEC-19 6JPH 1 JRNL REVDAT 1 30-OCT-19 6JPH 0 JRNL AUTH S.JI,S.R.DIX,A.A.AZIZ,S.E.SEDELNIKOVA,P.J.BAKER, JRNL AUTH 2 J.B.RAFFERTY,P.A.BULLOUGH,S.B.TZOKOV,J.AGIRRE,F.L.LI, JRNL AUTH 3 D.W.RICE JRNL TITL THE MOLECULAR BASIS OF ENDOLYTIC ACTIVITY OF A MULTIDOMAIN JRNL TITL 2 ALGINATE LYASE FROMDEFLUVIITALEA PHAPHYPHILA, A JRNL TITL 3 REPRESENTATIVE OF A NEW LYASE FAMILY, PL39. JRNL REF J.BIOL.CHEM. V. 294 18077 2019 JRNL REFN ESSN 1083-351X JRNL PMID 31624143 JRNL DOI 10.1074/JBC.RA119.010716 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 131.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.838 REMARK 3 FREE R VALUE TEST SET COUNT : 2850 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.17000 REMARK 3 B22 (A**2) : -3.17000 REMARK 3 B33 (A**2) : 10.28300 REMARK 3 B12 (A**2) : -1.58500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6454 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5487 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8787 ; 1.284 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12793 ; 1.152 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 769 ; 7.313 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 376 ;36.843 ;23.910 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1006 ;13.357 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.543 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 828 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7343 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1403 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1191 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 25 ; 0.225 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3071 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.200 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3080 ; 5.836 ; 6.325 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3079 ; 5.823 ; 6.324 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3847 ; 8.351 ; 9.499 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3848 ; 8.352 ; 9.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3374 ; 5.694 ; 6.733 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3372 ; 5.694 ; 6.729 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4940 ; 8.550 ; 9.940 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4940 ; 8.549 ; 9.940 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6JPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-19. REMARK 100 THE DEPOSITION ID IS D_1300011534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.759 REMARK 200 RESOLUTION RANGE LOW (A) : 131.305 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6000, 0.1 M MAGNESIUM ACETATE, REMARK 280 PH 6.5, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 0 REMARK 465 GLY A 771 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 945 O HOH A 1000 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 -20.90 -161.84 REMARK 500 PRO A 184 43.98 -81.07 REMARK 500 LEU A 202 46.48 -104.37 REMARK 500 GLU A 287 -162.58 61.85 REMARK 500 ASP A 288 84.60 -66.07 REMARK 500 ASN A 326 55.45 -100.66 REMARK 500 ASP A 335 -71.60 -45.91 REMARK 500 MET A 372 67.04 -109.58 REMARK 500 ASP A 409 23.31 -146.74 REMARK 500 LEU A 411 18.77 59.66 REMARK 500 MET A 422 -129.74 -101.97 REMARK 500 ALA A 423 128.98 -33.91 REMARK 500 SER A 429 -169.75 -175.48 REMARK 500 ASN A 431 -51.86 -151.97 REMARK 500 TRP A 441 -66.10 -127.65 REMARK 500 GLU A 463 130.37 -39.11 REMARK 500 PHE A 478 118.90 -168.77 REMARK 500 ASP A 488 44.97 -103.82 REMARK 500 GLN A 513 45.41 36.04 REMARK 500 ASP A 554 103.76 -55.89 REMARK 500 LYS A 602 -77.14 -105.49 REMARK 500 SER A 685 147.75 -172.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BEM B 3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 805 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 124 O REMARK 620 2 ASP A 132 OD1 116.7 REMARK 620 3 HOH A 901 O 164.1 77.7 REMARK 620 4 HOH A 917 O 88.5 117.1 78.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 287 OE1 REMARK 620 2 GLU A 287 OE2 47.6 REMARK 620 3 GLU A 401 OE1 123.4 143.7 REMARK 620 4 GLU A 401 OE2 85.5 97.4 47.7 REMARK 620 5 HIS A 407 O 76.8 123.6 70.2 84.8 REMARK 620 6 ASP A 409 OD1 104.7 101.1 114.6 161.2 82.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 801 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 407 ND1 REMARK 620 2 ASP A 425 OD1 162.4 REMARK 620 3 HIS A 448 NE2 106.2 90.5 REMARK 620 4 HOH A 905 O 103.3 81.1 91.8 REMARK 620 5 HOH A 916 O 87.5 88.0 87.1 169.0 REMARK 620 6 HOH A 921 O 83.8 79.0 168.4 91.6 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 474 OD1 REMARK 620 2 THR A 475 O 90.9 REMARK 620 3 ASP A 479 OD1 75.9 69.1 REMARK 620 4 ASP A 479 OD2 89.0 115.0 48.1 REMARK 620 5 GLN A 513 OE1 162.1 72.1 92.5 93.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6JP4 RELATED DB: PDB DBREF 6JPH A 0 771 PDB 6JPH 6JPH 0 771 SEQRES 1 A 772 LEU ALA ASN TYR GLU THR TYR ASP GLY PHE LYS VAL SER SEQRES 2 A 772 GLU GLU PRO VAL LEU PRO GLU LYS GLU VAL HIS PRO SER SEQRES 3 A 772 LEU TRP PHE THR LYS SER ASP ILE GLN LYS ILE LYS GLU SEQRES 4 A 772 LYS LYS ASN GLU ASP SER PHE THR ALA GLU LEU TRP GLU SEQRES 5 A 772 GLU ILE SER ASN SER PRO TYR LEU THR MET GLU ILE PRO SEQRES 6 A 772 THR ASP ILE PRO SER ALA THR ASP SER ASP THR ASP ILE SEQRES 7 A 772 HIS LYS TYR TYR GLY ASN MET SER ARG ILE ALA LYS TYR SEQRES 8 A 772 ASN ALA PHE MET TYR LEU MET THR GLY LYS SER GLU TYR SEQRES 9 A 772 ARG LEU ARG ALA THR GLU ALA LEU LYS ARG ALA PHE ASP SEQRES 10 A 772 GLY PRO ILE TYR GLU MET ASP PRO THR VAL SER GLY SER SEQRES 11 A 772 GLY VAL ASP GLU ILE TYR ARG ALA VAL TRP ALA GLN ASN SEQRES 12 A 772 PHE ALA THR ALA TYR ASP TRP ILE GLN PRO TYR LEU SER SEQRES 13 A 772 ASP GLU ASP ASP GLU ILE ILE ARG GLU ARG LEU ALA LYS SEQRES 14 A 772 GLU ALA GLN VAL VAL TYR GLU ASN LEU TYR THR TRP GLY SEQRES 15 A 772 PRO ARG PRO HIS ASN HIS LEU SER LYS PRO ALA TRP GLY SEQRES 16 A 772 LEU GLY THR LEU ALA LEU THR LEU SER ASP HIS PRO ASP SEQRES 17 A 772 ALA SER LYS TRP LEU ASN ARG ALA LEU GLU ALA ALA ASN SEQRES 18 A 772 THR ASN THR LEU TYR PHE PHE ASN LYS ASP GLY HIS TYR SEQRES 19 A 772 ARG GLU GLY ALA HIS TYR TYR VAL TYR SER LEU VAL ASN SEQRES 20 A 772 LEU ILE PRO PHE LEU TYR HIS TYR LYS ASN VAL SER GLY SEQRES 21 A 772 VAL ASN TYR PHE PRO GLU TYR LYS ASN ILE PHE GLU TRP SEQRES 22 A 772 ALA VAL LYS ILE ARG ASN GLY ARG GLY TRP MET PRO ASN SEQRES 23 A 772 VAL GLU ASP SER TRP ILE LYS PRO ALA PRO THR HIS MET SEQRES 24 A 772 VAL ALA SER GLN TYR LYS ASP THR ASP THR ASP LEU HIS SEQRES 25 A 772 SER THR ALA LYS LEU ALA ASN ILE LEU GLN TRP SER TYR SEQRES 26 A 772 PHE ASN THR ASP PHE ARG PRO TRP GLU PRO ASP GLY SER SEQRES 27 A 772 TYR THR GLY ALA SER TYR ASP ASP THR TRP ASP ILE ASP SEQRES 28 A 772 GLN TYR LEU THR TYR ASP SER THR ILE GLU GLN ILE LYS SEQRES 29 A 772 PRO ASP VAL SER GLY THR VAL PHE MET ASN ASN SER GLY SEQRES 30 A 772 GLN THR VAL PHE ARG SER ASP TRP ASN PHE ASN ASN PRO SEQRES 31 A 772 ASN SER ARG TYR LEU LEU PHE GLN GLY VAL ALA GLU ALA SEQRES 32 A 772 ASP ASN HIS TYR HIS TYR ASP HIS LEU SER PHE ILE ILE SEQRES 33 A 772 HIS ALA GLU ASN GLN MET MET ALA SER ASP SER GLY TYR SEQRES 34 A 772 SER ARG ASN SER TYR GLY GLU GLY ILE ARG THR SER TRP SEQRES 35 A 772 TYR LEU THR ALA GLU ALA HIS ASN VAL ILE THR ALA ASN SEQRES 36 A 772 GLY GLU HIS PRO LYS ASP VAL SER GLU ASN THR THR PRO SEQRES 37 A 772 VAL SER ARG TYR ASP MET ASP THR ASP PHE PHE ASP PHE SEQRES 38 A 772 GLN GLU LYS GLU ALA VAL TYR ASP GLY PHE THR PHE PRO SEQRES 39 A 772 GLU LYS ASN SER TYR ASP PHE SER GLY LYS GLN ILE ARG SEQRES 40 A 772 ALA ILE GLY PHE PRO ARG GLN ASP TYR PHE VAL VAL ALA SEQRES 41 A 772 ASP GLN LEU PHE SER ASP LYS GLU VAL GLN TYR ASP LEU SEQRES 42 A 772 TYR LEU HIS GLY GLY ARG GLY GLU MET SER GLY GLU GLY SEQRES 43 A 772 ASN TYR ARG LEU TRP THR TYR GLU ASP ASP ARG TYR GLY SEQRES 44 A 772 GLN GLU ALA LYS MET ALA ALA TRP VAL PHE PRO SER LYS SEQRES 45 A 772 GLU SER ILE PHE ILE ASP LYS GLU GLY GLU VAL ASN TYR SEQRES 46 A 772 GLU ALA GLY ALA PHE ASN SER TYR GLY TYR LEU ASN ALA SEQRES 47 A 772 ARG GLN ILE ALA LYS ASP THR MET PHE MET GLN ILE ILE SEQRES 48 A 772 VAL PRO LEU SER LYS TYR ALA ASP ILE PRO GLU VAL VAL SEQRES 49 A 772 ASP LEU SER THR ASP ASP VAL VAL GLY GLY THR VAL VAL SEQRES 50 A 772 LYS ASP ASN GLU LYS ASP THR PHE MET GLN GLN LEU ASN SEQRES 51 A 772 ASN ALA GLU ASN SER LEU GLY ASP ILE THR THR ASP ALA SEQRES 52 A 772 THR PHE ALA TYR THR ASN GLU ASN SER ASN ASN GLU LEU SEQRES 53 A 772 GLN HIS PHE SER VAL ARG GLN GLY THR SER LEU ASP TYR SEQRES 54 A 772 LYS GLY GLU ASN ILE PHE VAL SER ASN LYS PRO ILE THR SEQRES 55 A 772 PHE ALA LEU ASP ILE SER ASP GLU THR GLN TYR LYS GLY SEQRES 56 A 772 THR ILE ALA ALA LEU ASN GLU THR VAL GLU LEU ARG VAL SEQRES 57 A 772 LYS ASN PRO VAL GLY VAL PRO THR GLU SER VAL VAL VAL SEQRES 58 A 772 ASN GLY GLU ASN ILE GLU PHE SER VAL GLU ASP GLY TYR SEQRES 59 A 772 THR VAL ILE GLN VAL ALA GLU GLY GLY ASP ILE ASN ILE SEQRES 60 A 772 ASN PHE GLY GLU GLY HET BEM B 1 13 HET BEM B 2 12 HET BEM B 3 11 HET MN A 801 1 HET CA A 802 1 HET CA A 803 1 HET ACT A 804 4 HET MG A 805 1 HETNAM BEM BETA-D-MANNOPYRANURONIC ACID HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETSYN BEM BETA-D-MANNURONIC ACID; D-MANNURONIC ACID; MANNURONIC HETSYN 2 BEM ACID; (2S,3S,4S,5S,6R)-3,4,5,6-TETRAHYDROXYOXANE-2- HETSYN 3 BEM CARBOXYLIC ACID FORMUL 2 BEM 3(C6 H10 O7) FORMUL 3 MN MN 2+ FORMUL 4 CA 2(CA 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 MG MG 2+ FORMUL 8 HOH *144(H2 O) HELIX 1 AA1 THR A 29 SER A 31 5 3 HELIX 2 AA2 ASP A 32 LYS A 39 1 8 HELIX 3 AA3 LYS A 40 GLU A 42 5 3 HELIX 4 AA4 ASP A 43 SER A 54 1 12 HELIX 5 AA5 SER A 56 MET A 61 1 6 HELIX 6 AA6 SER A 73 GLY A 99 1 27 HELIX 7 AA7 LYS A 100 ARG A 113 1 14 HELIX 8 AA8 TYR A 135 GLN A 151 1 17 HELIX 9 AA9 PRO A 152 LEU A 154 5 3 HELIX 10 AB1 SER A 155 GLY A 181 1 27 HELIX 11 AB2 HIS A 185 LEU A 202 1 18 HELIX 12 AB3 ASP A 207 PHE A 226 1 20 HELIX 13 AB4 GLY A 236 GLY A 259 1 24 HELIX 14 AB5 LYS A 267 ARG A 277 1 11 HELIX 15 AB6 THR A 296 SER A 301 1 6 HELIX 16 AB7 LYS A 315 ASN A 326 1 12 HELIX 17 AB8 PHE A 329 GLU A 333 5 5 HELIX 18 AB9 THR A 346 TYR A 355 1 10 HELIX 19 AC1 GLU A 435 TRP A 441 1 7 HELIX 20 AC2 THR A 444 HIS A 448 5 5 HELIX 21 AC3 PRO A 511 ASP A 514 5 4 SHEET 1 AA1 5 VAL A 370 MET A 372 0 SHEET 2 AA1 5 GLN A 377 ARG A 381 -1 O VAL A 379 N VAL A 370 SHEET 3 AA1 5 ARG A 392 GLN A 397 -1 O PHE A 396 N THR A 378 SHEET 4 AA1 5 SER A 412 ALA A 417 -1 O HIS A 416 N TYR A 393 SHEET 5 AA1 5 GLN A 420 MET A 421 -1 O GLN A 420 N ALA A 417 SHEET 1 AA2 4 ILE A 451 ALA A 453 0 SHEET 2 AA2 4 VAL A 528 HIS A 535 -1 O ASP A 531 N THR A 452 SHEET 3 AA2 4 ASN A 590 ALA A 601 -1 O ALA A 601 N VAL A 528 SHEET 4 AA2 4 ILE A 574 VAL A 582 -1 N ILE A 576 O ASN A 596 SHEET 1 AA3 8 VAL A 468 MET A 473 0 SHEET 2 AA3 8 PHE A 480 VAL A 486 -1 O GLU A 482 N ARG A 470 SHEET 3 AA3 8 GLY A 502 GLY A 509 -1 O ILE A 508 N GLN A 481 SHEET 4 AA3 8 PHE A 516 SER A 524 -1 O GLN A 521 N ILE A 505 SHEET 5 AA3 8 THR A 604 SER A 614 -1 O THR A 604 N LEU A 522 SHEET 6 AA3 8 ALA A 561 PHE A 568 -1 N ALA A 564 O VAL A 611 SHEET 7 AA3 8 TYR A 547 TYR A 552 -1 N ARG A 548 O ALA A 565 SHEET 8 AA3 8 GLU A 540 SER A 542 -1 N GLU A 540 O THR A 551 SHEET 1 AA410 GLU A 621 ASP A 624 0 SHEET 2 AA410 VAL A 631 LYS A 637 -1 O THR A 634 N VAL A 623 SHEET 3 AA410 GLU A 640 GLN A 646 -1 O ASP A 642 N VAL A 635 SHEET 4 AA410 PHE A 664 GLU A 669 -1 O ALA A 665 N MET A 645 SHEET 5 AA410 LEU A 675 TYR A 688 -1 O GLN A 676 N ASN A 668 SHEET 6 AA410 GLU A 691 ASP A 705 -1 O ILE A 693 N LEU A 686 SHEET 7 AA410 GLN A 711 ILE A 716 -1 O LYS A 713 N ASP A 705 SHEET 8 AA410 GLY A 762 PHE A 768 -1 O ILE A 766 N TYR A 712 SHEET 9 AA410 THR A 735 VAL A 740 -1 N SER A 737 O ASN A 767 SHEET 10 AA410 GLU A 743 ILE A 745 -1 O ILE A 745 N VAL A 738 SHEET 1 AA5 7 ASN A 653 LEU A 655 0 SHEET 2 AA5 7 ILE A 658 THR A 660 -1 O THR A 660 N ASN A 653 SHEET 3 AA5 7 LEU A 675 TYR A 688 -1 O ASP A 687 N THR A 659 SHEET 4 AA5 7 GLU A 691 ASP A 705 -1 O ILE A 693 N LEU A 686 SHEET 5 AA5 7 VAL A 723 LYS A 728 -1 O LYS A 728 N ILE A 693 SHEET 6 AA5 7 TYR A 753 VAL A 758 -1 O VAL A 758 N VAL A 723 SHEET 7 AA5 7 PHE A 747 GLU A 750 -1 N SER A 748 O VAL A 755 LINK O4 BEM B 1 C1 BEM B 2 1555 1555 1.40 LINK O4 BEM B 2 C1 BEM B 3 1555 1555 1.40 LINK O PRO A 124 MG MG A 805 1555 1555 2.17 LINK OD1 ASP A 132 MG MG A 805 1555 1555 2.48 LINK OE1 GLU A 287 CA CA A 802 1555 1555 2.64 LINK OE2 GLU A 287 CA CA A 802 1555 1555 2.80 LINK OE1 GLU A 401 CA CA A 802 1555 1555 2.92 LINK OE2 GLU A 401 CA CA A 802 1555 1555 2.52 LINK ND1 HIS A 407 MN MN A 801 1555 1555 2.16 LINK O HIS A 407 CA CA A 802 1555 1555 2.48 LINK OD1 ASP A 409 CA CA A 802 1555 1555 2.16 LINK OD1 ASP A 425 MN MN A 801 1555 1555 1.99 LINK NE2 HIS A 448 MN MN A 801 1555 1555 2.27 LINK OD1 ASP A 474 CA CA A 803 1555 1555 2.19 LINK O THR A 475 CA CA A 803 1555 1555 2.47 LINK OD1 ASP A 479 CA CA A 803 1555 1555 2.66 LINK OD2 ASP A 479 CA CA A 803 1555 1555 2.72 LINK OE1 GLN A 513 CA CA A 803 1555 1555 2.30 LINK MN MN A 801 O HOH A 905 1555 1555 1.89 LINK MN MN A 801 O HOH A 916 1555 1555 2.32 LINK MN MN A 801 O HOH A 921 1555 1555 2.28 LINK MG MG A 805 O HOH A 901 1555 1555 1.82 LINK MG MG A 805 O HOH A 917 1555 1555 2.15 CISPEP 1 HIS A 23 PRO A 24 0 -3.32 CISPEP 2 GLU A 333 PRO A 334 0 -3.93 CISPEP 3 PHE A 492 PRO A 493 0 -9.12 CISPEP 4 PHE A 568 PRO A 569 0 -6.42 CRYST1 261.923 261.923 58.292 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003818 0.002204 0.000000 0.00000 SCALE2 0.000000 0.004409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017155 0.00000