data_6JQ5 # _entry.id 6JQ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JQ5 pdb_00006jq5 10.2210/pdb6jq5/pdb WWPDB D_1300011012 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JQ5 _pdbx_database_status.recvd_initial_deposition_date 2019-03-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ren, A.' 1 ? 'Zheng, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 116 _citation.language ? _citation.page_first 10783 _citation.page_last 10791 _citation.title 'Hatchet ribozyme structure and implications for cleavage mechanism.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1902413116 _citation.pdbx_database_id_PubMed 31088965 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zheng, L.' 1 ? primary 'Falschlunger, C.' 2 ? primary 'Huang, K.' 3 ? primary 'Mairhofer, E.' 4 ? primary 'Yuan, S.' 5 0000-0001-9858-4742 primary 'Wang, J.' 6 ? primary 'Patel, D.J.' 7 ? primary 'Micura, R.' 8 ? primary 'Ren, A.' 9 0000-0002-5420-4899 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6JQ5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.582 _cell.length_a_esd ? _cell.length_b 104.275 _cell.length_b_esd ? _cell.length_c 126.862 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (82-MER)' 26380.668 2 ? ? ? ? 2 non-polymer nat 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 79 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;UUACUGUGAGAAUCAGUAACAAACAUGUGGGGCUUAUAUCUAAUCGAAAGAUUAGUAUUAGUGCAGACGUUAAAACCAUG UC ; _entity_poly.pdbx_seq_one_letter_code_can ;UUACUGUGAGAAUCAGUAACAAACAUGUGGGGCUUAUAUCUAAUCGAAAGAUUAGUAUUAGUGCAGACGUUAAAACCAUG UC ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 A n 1 4 C n 1 5 U n 1 6 G n 1 7 U n 1 8 G n 1 9 A n 1 10 G n 1 11 A n 1 12 A n 1 13 U n 1 14 C n 1 15 A n 1 16 G n 1 17 U n 1 18 A n 1 19 A n 1 20 C n 1 21 A n 1 22 A n 1 23 A n 1 24 C n 1 25 A n 1 26 U n 1 27 G n 1 28 U n 1 29 G n 1 30 G n 1 31 G n 1 32 G n 1 33 C n 1 34 U n 1 35 U n 1 36 A n 1 37 U n 1 38 A n 1 39 U n 1 40 C n 1 41 U n 1 42 A n 1 43 A n 1 44 U n 1 45 C n 1 46 G n 1 47 A n 1 48 A n 1 49 A n 1 50 G n 1 51 A n 1 52 U n 1 53 U n 1 54 A n 1 55 G n 1 56 U n 1 57 A n 1 58 U n 1 59 U n 1 60 A n 1 61 G n 1 62 U n 1 63 G n 1 64 C n 1 65 A n 1 66 G n 1 67 A n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 A n 1 73 A n 1 74 A n 1 75 A n 1 76 C n 1 77 C n 1 78 A n 1 79 U n 1 80 G n 1 81 U n 1 82 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 82 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6JQ5 _struct_ref.pdbx_db_accession 6JQ5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6JQ5 A 1 ? 82 ? 6JQ5 1 ? 82 ? 1 82 2 1 6JQ5 B 1 ? 82 ? 6JQ5 1 ? 82 ? 1 82 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JQ5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 51.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.10M HEPES, pH 6.8, 2.0M (NH4)2SO4' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-26 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6JQ5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 33380 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 31.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.036 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.18 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1867 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.90 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JQ5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.059 _refine.ls_d_res_low 33.523 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 33267 _refine.ls_number_reflns_R_free 1628 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.07 _refine.ls_percent_reflns_R_free 4.89 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1947 _refine.ls_R_factor_R_free 0.2308 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1929 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6JQ6 _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.20 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.31 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3472 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 3552 _refine_hist.d_res_high 2.059 _refine_hist.d_res_low 33.523 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 3919 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.034 ? 6099 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.686 ? 1963 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.048 ? 818 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 164 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0587 2.1193 . . 98 1867 70.00 . . . 0.3322 . 0.2931 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1193 2.1877 . . 113 2651 99.00 . . . 0.3407 . 0.3014 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1877 2.2658 . . 128 2662 98.00 . . . 0.4637 . 0.3500 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2658 2.3565 . . 154 2622 99.00 . . . 0.3489 . 0.2982 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3565 2.4638 . . 130 2670 99.00 . . . 0.3370 . 0.2865 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4638 2.5936 . . 146 2675 100.00 . . . 0.3740 . 0.2679 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5936 2.7560 . . 143 2679 100.00 . . . 0.3069 . 0.2833 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7560 2.9687 . . 144 2695 100.00 . . . 0.3028 . 0.2640 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9687 3.2672 . . 132 2727 100.00 . . . 0.2478 . 0.1971 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2672 3.7395 . . 154 2725 100.00 . . . 0.2091 . 0.1662 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7395 4.7093 . . 141 2761 100.00 . . . 0.1688 . 0.1509 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.7093 33.5273 . . 145 2905 100.00 . . . 0.1689 . 0.1426 . . . . . . . . . . # _struct.entry_id 6JQ5 _struct.title 'The structure of Hatchet Ribozyme' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JQ5 _struct_keywords.text 'Ribozyme, non-coding RNA, hatchet, cleavage, catalysis, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 201 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 206 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 225 1_555 ? ? ? ? ? ? ? 1.931 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 227 1_555 ? ? ? ? ? ? ? 2.298 ? ? hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 1 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 1 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 18 N1 ? ? A U 2 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 2 A A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 17 N3 ? ? A A 3 A U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 17 O4 ? ? A A 3 A U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 59 O4 ? ? A A 3 A U 59 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog8 hydrog ? ? A A 3 N7 ? ? ? 1_555 A U 59 N3 ? ? A A 3 A U 59 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog9 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 4 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 4 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 4 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 15 N1 ? ? A U 5 A A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 15 N6 ? ? A U 5 A A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 6 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 6 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 6 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 11 N7 ? ? A U 7 A A 11 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog18 hydrog ? ? A U 7 O2 ? ? ? 1_555 A A 11 N6 ? ? A U 7 A A 11 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A U 39 O4 ? ? A G 8 A U 39 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog20 hydrog ? ? A U 13 N3 ? ? ? 1_555 A U 37 O2 ? ? A U 13 A U 37 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 30 N2 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog22 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 30 N1 ? ? A C 20 A G 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog23 hydrog ? ? A A 21 N6 ? ? ? 1_555 A U 28 O2 ? ? A A 21 A U 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog24 hydrog ? ? A A 21 N7 ? ? ? 1_555 A U 28 N3 ? ? A A 21 A U 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog25 hydrog ? ? A A 22 N6 ? ? ? 1_555 B A 78 N7 ? ? A A 22 B A 78 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog26 hydrog ? ? A A 22 N7 ? ? ? 1_555 B A 78 N6 ? ? A A 22 B A 78 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog27 hydrog ? ? A A 23 N6 ? ? ? 1_555 B U 81 O4 ? ? A A 23 B U 81 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog28 hydrog ? ? A C 24 N3 ? ? ? 1_555 B G 80 N1 ? ? A C 24 B G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 24 N4 ? ? ? 1_555 B G 80 O6 ? ? A C 24 B G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 24 O2 ? ? ? 1_555 B G 80 N2 ? ? A C 24 B G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A A 25 N1 ? ? ? 1_555 B U 79 N3 ? ? A A 25 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 25 N6 ? ? ? 1_555 B U 79 O4 ? ? A A 25 B U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 26 N3 ? ? ? 1_555 B A 78 N1 ? ? A U 26 B A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 26 O4 ? ? ? 1_555 B A 78 N6 ? ? A U 26 B A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 27 N1 ? ? ? 1_555 B C 77 N3 ? ? A G 27 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 27 N2 ? ? ? 1_555 B C 77 O2 ? ? A G 27 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 27 O6 ? ? ? 1_555 B C 77 N4 ? ? A G 27 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 29 N2 ? ? ? 1_555 B A 74 N1 ? ? A G 29 B A 74 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog39 hydrog ? ? A G 29 N3 ? ? ? 1_555 B A 74 N6 ? ? A G 29 B A 74 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog40 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 31 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 31 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 31 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 32 N1 ? ? ? 1_555 A U 62 O2 ? ? A G 32 A U 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog44 hydrog ? ? A G 32 O6 ? ? ? 1_555 A U 62 N3 ? ? A G 32 A U 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 61 N1 ? ? A C 33 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 61 O6 ? ? A C 33 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 33 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 60 N1 ? ? A U 34 A A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 60 N6 ? ? A U 34 A A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 36 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 36 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A A 36 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 36 A U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 57 N1 ? ? A U 37 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 37 O4 ? ? ? 1_555 A A 57 N6 ? ? A U 37 A A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 56 N3 ? ? A A 38 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 56 O4 ? ? A A 38 A U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 55 N1 ? ? A C 40 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 55 O6 ? ? A C 40 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 55 N2 ? ? A C 40 A G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 54 N1 ? ? A U 41 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 41 O4 ? ? ? 1_555 A A 54 N6 ? ? A U 41 A A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A A 42 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 42 A U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 42 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 42 A U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 43 N1 ? ? ? 1_555 A U 52 N3 ? ? A A 43 A U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 52 O4 ? ? A A 43 A U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 44 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 44 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 44 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 44 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 45 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 45 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 45 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 45 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 45 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 45 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 46 N2 ? ? ? 1_555 A A 49 N7 ? ? A G 46 A A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A A 65 N6 ? ? ? 1_555 B U 71 O4 ? ? A A 65 B U 71 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog72 hydrog ? ? A A 65 N7 ? ? ? 1_555 B U 71 N3 ? ? A A 65 B U 71 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog73 hydrog ? ? A A 67 N1 ? ? ? 1_555 B U 70 N3 ? ? A A 67 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 67 N6 ? ? ? 1_555 B U 70 O4 ? ? A A 67 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 68 N3 ? ? ? 1_555 B G 69 N1 ? ? A C 68 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 68 N4 ? ? ? 1_555 B G 69 O6 ? ? A C 68 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 68 O2 ? ? ? 1_555 B G 69 N2 ? ? A C 68 B G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 69 N1 ? ? ? 1_555 B C 68 N3 ? ? A G 69 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A G 69 N2 ? ? ? 1_555 B C 68 O2 ? ? A G 69 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 69 O6 ? ? ? 1_555 B C 68 N4 ? ? A G 69 B C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 70 O2 ? ? ? 1_555 A A 72 N6 ? ? A U 70 A A 72 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog82 hydrog ? ? A U 70 N3 ? ? ? 1_555 B A 67 N1 ? ? A U 70 B A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A U 70 O4 ? ? ? 1_555 B A 67 N6 ? ? A U 70 B A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 71 N3 ? ? ? 1_555 A A 73 N7 ? ? A U 71 A A 73 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog85 hydrog ? ? A U 71 O4 ? ? ? 1_555 A A 73 N6 ? ? A U 71 A A 73 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog86 hydrog ? ? A A 72 N6 ? ? ? 1_555 B C 68 O2 ? ? A A 72 B C 68 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog87 hydrog ? ? A A 73 N6 ? ? ? 1_555 B A 67 N3 ? ? A A 73 B A 67 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog88 hydrog ? ? A A 74 N1 ? ? ? 1_555 B G 66 N2 ? ? A A 74 B G 66 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog89 hydrog ? ? A A 75 N6 ? ? ? 1_555 B G 29 N3 ? ? A A 75 B G 29 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog90 hydrog ? ? A A 75 N7 ? ? ? 1_555 B G 29 N2 ? ? A A 75 B G 29 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog91 hydrog ? ? A C 77 N3 ? ? ? 1_555 B G 27 N1 ? ? A C 77 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 77 N4 ? ? ? 1_555 B G 27 O6 ? ? A C 77 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 77 O2 ? ? ? 1_555 B G 27 N2 ? ? A C 77 B G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A A 78 N6 ? ? ? 1_555 B A 22 N7 ? ? A A 78 B A 22 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog95 hydrog ? ? A A 78 N7 ? ? ? 1_555 B A 22 N6 ? ? A A 78 B A 22 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog96 hydrog ? ? A A 78 N1 ? ? ? 1_555 B U 26 N3 ? ? A A 78 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A A 78 N6 ? ? ? 1_555 B U 26 O4 ? ? A A 78 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A U 79 N3 ? ? ? 1_555 B A 25 N1 ? ? A U 79 B A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A U 79 O4 ? ? ? 1_555 B A 25 N6 ? ? A U 79 B A 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 80 N1 ? ? ? 1_555 B C 24 N3 ? ? A G 80 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 80 N2 ? ? ? 1_555 B C 24 O2 ? ? A G 80 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A G 80 O6 ? ? ? 1_555 B C 24 N4 ? ? A G 80 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A U 81 N3 ? ? ? 1_555 B A 23 N1 ? ? A U 81 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A U 81 O4 ? ? ? 1_555 B A 23 N6 ? ? A U 81 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B U 1 N3 ? ? ? 1_555 B A 19 N1 ? ? B U 1 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B U 1 O4 ? ? ? 1_555 B A 19 N6 ? ? B U 1 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 18 N1 ? ? B U 2 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B U 2 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 2 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 17 N3 ? ? B A 3 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 17 O4 ? ? B A 3 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 59 O4 ? ? B A 3 B U 59 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog112 hydrog ? ? B A 3 N7 ? ? ? 1_555 B U 59 N3 ? ? B A 3 B U 59 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog113 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 16 N1 ? ? B C 4 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 16 O6 ? ? B C 4 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 16 N2 ? ? B C 4 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 15 N1 ? ? B U 5 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 15 N6 ? ? B U 5 B A 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 14 N3 ? ? B G 6 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 14 O2 ? ? B G 6 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 14 N4 ? ? B G 6 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 11 N7 ? ? B U 7 B A 11 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog122 hydrog ? ? B U 7 O2 ? ? ? 1_555 B A 11 N6 ? ? B U 7 B A 11 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog123 hydrog ? ? B G 8 N2 ? ? ? 1_555 B U 39 O4 ? ? B G 8 B U 39 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog124 hydrog ? ? B U 13 N3 ? ? ? 1_555 B U 37 O2 ? ? B U 13 B U 37 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog125 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 30 N2 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog126 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 30 N1 ? ? B C 20 B G 30 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog127 hydrog ? ? B A 21 N6 ? ? ? 1_555 B U 28 O2 ? ? B A 21 B U 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog128 hydrog ? ? B A 21 N7 ? ? ? 1_555 B U 28 N3 ? ? B A 21 B U 28 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog129 hydrog ? ? B G 31 N1 ? ? ? 1_555 B C 64 N3 ? ? B G 31 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B G 31 N2 ? ? ? 1_555 B C 64 O2 ? ? B G 31 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B G 31 O6 ? ? ? 1_555 B C 64 N4 ? ? B G 31 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B G 32 N1 ? ? ? 1_555 B U 62 O2 ? ? B G 32 B U 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog133 hydrog ? ? B G 32 O6 ? ? ? 1_555 B U 62 N3 ? ? B G 32 B U 62 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog134 hydrog ? ? B C 33 N3 ? ? ? 1_555 B G 61 N1 ? ? B C 33 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? B C 33 N4 ? ? ? 1_555 B G 61 O6 ? ? B C 33 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? B C 33 O2 ? ? ? 1_555 B G 61 N2 ? ? B C 33 B G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B U 34 N3 ? ? ? 1_555 B A 60 N1 ? ? B U 34 B A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B U 34 O4 ? ? ? 1_555 B A 60 N6 ? ? B U 34 B A 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B A 36 N1 ? ? ? 1_555 B U 58 N3 ? ? B A 36 B U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B A 36 N6 ? ? ? 1_555 B U 58 O4 ? ? B A 36 B U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B U 37 N3 ? ? ? 1_555 B A 57 N1 ? ? B U 37 B A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B U 37 O4 ? ? ? 1_555 B A 57 N6 ? ? B U 37 B A 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B A 38 N1 ? ? ? 1_555 B U 56 N3 ? ? B A 38 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B A 38 N6 ? ? ? 1_555 B U 56 O4 ? ? B A 38 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B C 40 N3 ? ? ? 1_555 B G 55 N1 ? ? B C 40 B G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B C 40 N4 ? ? ? 1_555 B G 55 O6 ? ? B C 40 B G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B C 40 O2 ? ? ? 1_555 B G 55 N2 ? ? B C 40 B G 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B U 41 N3 ? ? ? 1_555 B A 54 N1 ? ? B U 41 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? B U 41 O4 ? ? ? 1_555 B A 54 N6 ? ? B U 41 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? B A 42 N1 ? ? ? 1_555 B U 53 N3 ? ? B A 42 B U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? B A 42 N6 ? ? ? 1_555 B U 53 O4 ? ? B A 42 B U 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? B A 43 N1 ? ? ? 1_555 B U 52 N3 ? ? B A 43 B U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? B A 43 N6 ? ? ? 1_555 B U 52 O4 ? ? B A 43 B U 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog154 hydrog ? ? B U 44 N3 ? ? ? 1_555 B A 51 N1 ? ? B U 44 B A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog155 hydrog ? ? B U 44 O4 ? ? ? 1_555 B A 51 N6 ? ? B U 44 B A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog156 hydrog ? ? B C 45 N3 ? ? ? 1_555 B G 50 N1 ? ? B C 45 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog157 hydrog ? ? B C 45 N4 ? ? ? 1_555 B G 50 O6 ? ? B C 45 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? B C 45 O2 ? ? ? 1_555 B G 50 N2 ? ? B C 45 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? B G 46 N2 ? ? ? 1_555 B A 49 N7 ? ? B G 46 B A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog160 hydrog ? ? B G 69 O6 ? ? ? 1_555 B C 76 N4 ? ? B G 69 B C 76 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'binding site for residue MG A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH D . ? HOH A 201 . ? 1_555 ? 2 AC1 4 HOH D . ? HOH A 206 . ? 1_555 ? 3 AC1 4 HOH D . ? HOH A 225 . ? 1_555 ? 4 AC1 4 HOH D . ? HOH A 227 . ? 1_555 ? # _atom_sites.entry_id 6JQ5 _atom_sites.fract_transf_matrix[1][1] 0.024641 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009590 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007883 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 U 2 2 2 U U A . n A 1 3 A 3 3 3 A A A . n A 1 4 C 4 4 4 C C A . n A 1 5 U 5 5 5 U U A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 A 12 12 12 A A A . n A 1 13 U 13 13 13 U U A . n A 1 14 C 14 14 14 C C A . n A 1 15 A 15 15 15 A A A . n A 1 16 G 16 16 16 G G A . n A 1 17 U 17 17 17 U U A . n A 1 18 A 18 18 18 A A A . n A 1 19 A 19 19 19 A A A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 A 25 25 25 A A A . n A 1 26 U 26 26 26 U U A . n A 1 27 G 27 27 27 G G A . n A 1 28 U 28 28 28 U U A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 U 34 34 34 U U A . n A 1 35 U 35 35 35 U U A . n A 1 36 A 36 36 36 A A A . n A 1 37 U 37 37 37 U U A . n A 1 38 A 38 38 38 A A A . n A 1 39 U 39 39 39 U U A . n A 1 40 C 40 40 40 C C A . n A 1 41 U 41 41 41 U U A . n A 1 42 A 42 42 42 A A A . n A 1 43 A 43 43 43 A A A . n A 1 44 U 44 44 44 U U A . n A 1 45 C 45 45 45 C C A . n A 1 46 G 46 46 46 G G A . n A 1 47 A 47 47 47 A A A . n A 1 48 A 48 48 48 A A A . n A 1 49 A 49 49 49 A A A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 U 52 52 52 U U A . n A 1 53 U 53 53 53 U U A . n A 1 54 A 54 54 54 A A A . n A 1 55 G 55 55 55 G G A . n A 1 56 U 56 56 56 U U A . n A 1 57 A 57 57 57 A A A . n A 1 58 U 58 58 58 U U A . n A 1 59 U 59 59 59 U U A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 U 62 62 62 U U A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 A 65 65 65 A A A . n A 1 66 G 66 66 66 G G A . n A 1 67 A 67 67 67 A A A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 U 70 70 70 U U A . n A 1 71 U 71 71 71 U U A . n A 1 72 A 72 72 72 A A A . n A 1 73 A 73 73 73 A A A . n A 1 74 A 74 74 74 A A A . n A 1 75 A 75 75 75 A A A . n A 1 76 C 76 76 76 C C A . n A 1 77 C 77 77 77 C C A . n A 1 78 A 78 78 78 A A A . n A 1 79 U 79 79 79 U U A . n A 1 80 G 80 80 80 G G A . n A 1 81 U 81 81 81 U U A . n A 1 82 C 82 82 82 C C A . n B 1 1 U 1 1 1 U U B . n B 1 2 U 2 2 2 U U B . n B 1 3 A 3 3 3 A A B . n B 1 4 C 4 4 4 C C B . n B 1 5 U 5 5 5 U U B . n B 1 6 G 6 6 6 G G B . n B 1 7 U 7 7 7 U U B . n B 1 8 G 8 8 8 G G B . n B 1 9 A 9 9 9 A A B . n B 1 10 G 10 10 10 G G B . n B 1 11 A 11 11 11 A A B . n B 1 12 A 12 12 12 A A B . n B 1 13 U 13 13 13 U U B . n B 1 14 C 14 14 14 C C B . n B 1 15 A 15 15 15 A A B . n B 1 16 G 16 16 16 G G B . n B 1 17 U 17 17 17 U U B . n B 1 18 A 18 18 18 A A B . n B 1 19 A 19 19 19 A A B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 A 22 22 22 A A B . n B 1 23 A 23 23 23 A A B . n B 1 24 C 24 24 24 C C B . n B 1 25 A 25 25 25 A A B . n B 1 26 U 26 26 26 U U B . n B 1 27 G 27 27 27 G G B . n B 1 28 U 28 28 28 U U B . n B 1 29 G 29 29 29 G G B . n B 1 30 G 30 30 30 G G B . n B 1 31 G 31 31 31 G G B . n B 1 32 G 32 32 32 G G B . n B 1 33 C 33 33 33 C C B . n B 1 34 U 34 34 34 U U B . n B 1 35 U 35 35 35 U U B . n B 1 36 A 36 36 36 A A B . n B 1 37 U 37 37 37 U U B . n B 1 38 A 38 38 38 A A B . n B 1 39 U 39 39 39 U U B . n B 1 40 C 40 40 40 C C B . n B 1 41 U 41 41 41 U U B . n B 1 42 A 42 42 42 A A B . n B 1 43 A 43 43 43 A A B . n B 1 44 U 44 44 44 U U B . n B 1 45 C 45 45 45 C C B . n B 1 46 G 46 46 46 G G B . n B 1 47 A 47 47 47 A A B . n B 1 48 A 48 48 48 A A B . n B 1 49 A 49 49 49 A A B . n B 1 50 G 50 50 50 G G B . n B 1 51 A 51 51 51 A A B . n B 1 52 U 52 52 52 U U B . n B 1 53 U 53 53 53 U U B . n B 1 54 A 54 54 54 A A B . n B 1 55 G 55 55 55 G G B . n B 1 56 U 56 56 56 U U B . n B 1 57 A 57 57 57 A A B . n B 1 58 U 58 58 58 U U B . n B 1 59 U 59 59 59 U U B . n B 1 60 A 60 60 60 A A B . n B 1 61 G 61 61 61 G G B . n B 1 62 U 62 62 62 U U B . n B 1 63 G 63 63 63 G G B . n B 1 64 C 64 64 64 C C B . n B 1 65 A 65 65 65 A A B . n B 1 66 G 66 66 66 G G B . n B 1 67 A 67 67 67 A A B . n B 1 68 C 68 68 68 C C B . n B 1 69 G 69 69 69 G G B . n B 1 70 U 70 70 70 U U B . n B 1 71 U 71 71 71 U U B . n B 1 72 A 72 72 72 A A B . n B 1 73 A 73 73 73 A A B . n B 1 74 A 74 74 74 A A B . n B 1 75 A 75 75 75 A A B . n B 1 76 C 76 76 76 C C B . n B 1 77 C 77 77 77 C C B . n B 1 78 A 78 78 78 A A B . n B 1 79 U 79 79 79 U U B . n B 1 80 G 80 80 80 G G B . n B 1 81 U 81 81 81 U U B . n B 1 82 C 82 82 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG A . D 3 HOH 1 201 86 HOH HOH A . D 3 HOH 2 202 28 HOH HOH A . D 3 HOH 3 203 14 HOH HOH A . D 3 HOH 4 204 39 HOH HOH A . D 3 HOH 5 205 88 HOH HOH A . D 3 HOH 6 206 67 HOH HOH A . D 3 HOH 7 207 37 HOH HOH A . D 3 HOH 8 208 47 HOH HOH A . D 3 HOH 9 209 66 HOH HOH A . D 3 HOH 10 210 26 HOH HOH A . D 3 HOH 11 211 56 HOH HOH A . D 3 HOH 12 212 80 HOH HOH A . D 3 HOH 13 213 12 HOH HOH A . D 3 HOH 14 214 13 HOH HOH A . D 3 HOH 15 215 7 HOH HOH A . D 3 HOH 16 216 50 HOH HOH A . D 3 HOH 17 217 36 HOH HOH A . D 3 HOH 18 218 22 HOH HOH A . D 3 HOH 19 219 46 HOH HOH A . D 3 HOH 20 220 40 HOH HOH A . D 3 HOH 21 221 42 HOH HOH A . D 3 HOH 22 222 48 HOH HOH A . D 3 HOH 23 223 25 HOH HOH A . D 3 HOH 24 224 59 HOH HOH A . D 3 HOH 25 225 87 HOH HOH A . D 3 HOH 26 226 68 HOH HOH A . D 3 HOH 27 227 85 HOH HOH A . D 3 HOH 28 228 71 HOH HOH A . D 3 HOH 29 229 69 HOH HOH A . E 3 HOH 1 101 31 HOH HOH B . E 3 HOH 2 102 62 HOH HOH B . E 3 HOH 3 103 83 HOH HOH B . E 3 HOH 4 104 20 HOH HOH B . E 3 HOH 5 105 3 HOH HOH B . E 3 HOH 6 106 10 HOH HOH B . E 3 HOH 7 107 11 HOH HOH B . E 3 HOH 8 108 1 HOH HOH B . E 3 HOH 9 109 29 HOH HOH B . E 3 HOH 10 110 4 HOH HOH B . E 3 HOH 11 111 16 HOH HOH B . E 3 HOH 12 112 5 HOH HOH B . E 3 HOH 13 113 17 HOH HOH B . E 3 HOH 14 114 52 HOH HOH B . E 3 HOH 15 115 32 HOH HOH B . E 3 HOH 16 116 27 HOH HOH B . E 3 HOH 17 117 21 HOH HOH B . E 3 HOH 18 118 24 HOH HOH B . E 3 HOH 19 119 41 HOH HOH B . E 3 HOH 20 120 30 HOH HOH B . E 3 HOH 21 121 61 HOH HOH B . E 3 HOH 22 122 81 HOH HOH B . E 3 HOH 23 123 44 HOH HOH B . E 3 HOH 24 124 8 HOH HOH B . E 3 HOH 25 125 2 HOH HOH B . E 3 HOH 26 126 15 HOH HOH B . E 3 HOH 27 127 6 HOH HOH B . E 3 HOH 28 128 33 HOH HOH B . E 3 HOH 29 129 38 HOH HOH B . E 3 HOH 30 130 57 HOH HOH B . E 3 HOH 31 131 18 HOH HOH B . E 3 HOH 32 132 49 HOH HOH B . E 3 HOH 33 133 45 HOH HOH B . E 3 HOH 34 134 9 HOH HOH B . E 3 HOH 35 135 23 HOH HOH B . E 3 HOH 36 136 34 HOH HOH B . E 3 HOH 37 137 77 HOH HOH B . E 3 HOH 38 138 82 HOH HOH B . E 3 HOH 39 139 58 HOH HOH B . E 3 HOH 40 140 54 HOH HOH B . E 3 HOH 41 141 76 HOH HOH B . E 3 HOH 42 142 60 HOH HOH B . E 3 HOH 43 143 79 HOH HOH B . E 3 HOH 44 144 75 HOH HOH B . E 3 HOH 45 145 74 HOH HOH B . E 3 HOH 46 146 70 HOH HOH B . E 3 HOH 47 147 84 HOH HOH B . E 3 HOH 48 148 78 HOH HOH B . E 3 HOH 49 149 72 HOH HOH B . E 3 HOH 50 150 73 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4400 ? 1 MORE 13 ? 1 'SSA (A^2)' 24380 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 201 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 206 ? 1_555 106.1 ? 2 O ? D HOH . ? A HOH 201 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 225 ? 1_555 144.7 ? 3 O ? D HOH . ? A HOH 206 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 225 ? 1_555 85.0 ? 4 O ? D HOH . ? A HOH 201 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 227 ? 1_555 108.6 ? 5 O ? D HOH . ? A HOH 206 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 227 ? 1_555 140.1 ? 6 O ? D HOH . ? A HOH 225 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 227 ? 1_555 55.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-06-12 2 'Structure model' 1 1 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.value' 6 2 'Structure model' '_struct_conn.pdbx_dist_value' 7 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -32.5384 _pdbx_refine_tls.origin_y -15.4974 _pdbx_refine_tls.origin_z -15.8258 _pdbx_refine_tls.T[1][1] 0.2835 _pdbx_refine_tls.T[2][2] 0.3313 _pdbx_refine_tls.T[3][3] 0.3314 _pdbx_refine_tls.T[1][2] -0.0136 _pdbx_refine_tls.T[1][3] 0.0232 _pdbx_refine_tls.T[2][3] -0.0300 _pdbx_refine_tls.L[1][1] 0.0155 _pdbx_refine_tls.L[2][2] 2.5432 _pdbx_refine_tls.L[3][3] 0.4898 _pdbx_refine_tls.L[1][2] 0.2424 _pdbx_refine_tls.L[1][3] 0.1540 _pdbx_refine_tls.L[2][3] 0.5004 _pdbx_refine_tls.S[1][1] -0.0004 _pdbx_refine_tls.S[1][2] 0.0411 _pdbx_refine_tls.S[1][3] -0.0139 _pdbx_refine_tls.S[2][1] 0.2160 _pdbx_refine_tls.S[2][2] 0.0454 _pdbx_refine_tls.S[2][3] -0.0579 _pdbx_refine_tls.S[3][1] -0.0987 _pdbx_refine_tls.S[3][2] -0.0102 _pdbx_refine_tls.S[3][3] -0.0511 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 225 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 227 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.99 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 139 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 147 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_344 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B A 51 ? ? P B A 51 ? ? OP1 B A 51 ? ? 97.22 105.70 -8.48 0.90 N 2 1 N7 B A 51 ? ? C8 B A 51 ? ? N9 B A 51 ? ? 116.90 113.80 3.10 0.50 N 3 1 "O4'" B A 73 ? ? "C1'" B A 73 ? ? N9 B A 73 ? ? 102.57 108.20 -5.63 0.80 N # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 229 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.70 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id C _pdbx_unobs_or_zero_occ_residues.auth_seq_id 82 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id C _pdbx_unobs_or_zero_occ_residues.label_seq_id 82 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6JQ5 'double helix' 6JQ5 'a-form double helix' 6JQ5 'parallel strands' 6JQ5 'hairpin loop' 6JQ5 tetraloop 6JQ5 'bulge loop' 6JQ5 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 39 1_555 A G 8 1_555 -3.851 1.014 -0.480 -4.740 26.205 102.533 1 A_U39:G8_A A 39 ? A 8 ? ? 5 1 A A 11 1_555 A U 7 1_555 -4.033 -1.912 0.416 2.533 7.471 -98.598 2 A_A11:U7_A A 11 ? A 7 ? 24 4 1 A C 14 1_555 A G 6 1_555 0.212 -0.174 0.219 4.370 -13.006 -2.188 3 A_C14:G6_A A 14 ? A 6 ? 19 1 1 A A 15 1_555 A U 5 1_555 -0.054 -0.041 0.143 -1.893 -13.025 4.113 4 A_A15:U5_A A 15 ? A 5 ? 20 1 1 A G 16 1_555 A C 4 1_555 -0.116 -0.137 0.222 -6.319 -15.565 6.402 5 A_G16:C4_A A 16 ? A 4 ? 19 1 1 A U 17 1_555 A A 3 1_555 -0.460 -0.236 0.110 -4.267 -11.031 -4.376 6 A_U17:A3_A A 17 ? A 3 ? 20 1 1 A A 18 1_555 A U 2 1_555 0.013 -0.039 0.423 6.757 -2.603 1.929 7 A_A18:U2_A A 18 ? A 2 ? 20 1 1 A A 19 1_555 A U 1 1_555 -0.009 -0.224 -0.094 12.931 -9.294 5.499 8 A_A19:U1_A A 19 ? A 1 ? 20 1 1 A C 20 1_555 A G 30 1_555 -0.106 -4.239 -0.528 -13.897 -9.768 -142.972 9 A_C20:G30_A A 20 ? A 30 ? 22 2 1 B A 74 1_555 A G 29 1_555 -3.517 3.830 0.060 -30.446 -3.611 57.815 10 B_A74:G29_A B 74 ? A 29 ? 10 6 1 A A 21 1_555 A U 28 1_555 -4.206 -2.283 -0.151 2.269 1.589 -92.445 11 A_A21:U28_A A 21 ? A 28 ? 24 4 1 B C 77 1_555 A G 27 1_555 0.385 -0.234 -0.129 3.579 -11.243 2.444 12 B_C77:G27_A B 77 ? A 27 ? 19 1 1 B A 78 1_555 A U 26 1_555 0.017 -0.190 -0.022 -7.755 -16.334 5.005 13 B_A78:U26_A B 78 ? A 26 ? 20 1 1 B U 79 1_555 A A 25 1_555 0.396 -0.286 0.170 0.457 -16.010 5.231 14 B_U79:A25_A B 79 ? A 25 ? 20 1 1 B G 80 1_555 A C 24 1_555 -0.258 -0.173 0.169 -0.442 -15.467 -0.206 15 B_G80:C24_A B 80 ? A 24 ? 19 1 1 B U 81 1_555 A A 23 1_555 -0.239 2.852 0.441 -18.603 13.265 -169.588 16 B_U81:A23_A B 81 ? A 23 ? ? ? 1 B A 23 1_555 A U 81 1_555 -0.018 0.145 0.459 11.238 -14.110 1.239 17 B_A23:U81_A B 23 ? A 81 ? 20 1 1 B C 24 1_555 A G 80 1_555 -0.087 -0.226 0.194 7.184 -18.953 3.220 18 B_C24:G80_A B 24 ? A 80 ? 19 1 1 B A 25 1_555 A U 79 1_555 -0.722 -0.206 0.393 5.215 -12.098 6.566 19 B_A25:U79_A B 25 ? A 79 ? 20 1 1 B U 26 1_555 A A 78 1_555 0.063 -0.367 0.101 5.912 -17.377 -0.872 20 B_U26:A78_A B 26 ? A 78 ? 20 1 1 B G 27 1_555 A C 77 1_555 0.038 -0.077 0.451 -1.312 -10.809 -3.375 21 B_G27:C77_A B 27 ? A 77 ? 19 1 1 B U 28 1_555 B A 21 1_555 4.419 -2.172 0.088 -5.833 2.740 -98.302 22 B_U28:A21_B B 28 ? B 21 ? 24 4 1 B G 29 1_555 A A 75 1_555 6.366 -4.277 0.752 21.979 8.848 6.613 23 B_G29:A75_A B 29 ? A 75 ? 11 9 1 B G 30 1_555 B C 20 1_555 0.074 3.995 0.551 6.013 7.846 148.436 24 B_G30:C20_B B 30 ? B 20 ? 22 2 1 B U 1 1_555 B A 19 1_555 -0.097 -0.126 0.131 -11.409 -2.498 3.975 25 B_U1:A19_B B 1 ? B 19 ? 20 1 1 B U 2 1_555 B A 18 1_555 -0.090 -0.148 0.111 -0.746 -3.356 0.945 26 B_U2:A18_B B 2 ? B 18 ? 20 1 1 B A 3 1_555 B U 17 1_555 0.126 -0.198 0.174 1.443 -8.838 -3.862 27 B_A3:U17_B B 3 ? B 17 ? 20 1 1 B C 4 1_555 B G 16 1_555 0.330 -0.018 0.269 1.615 -14.108 0.002 28 B_C4:G16_B B 4 ? B 16 ? 19 1 1 B U 5 1_555 B A 15 1_555 0.137 -0.056 0.093 4.252 -15.235 5.026 29 B_U5:A15_B B 5 ? B 15 ? 20 1 1 B G 6 1_555 B C 14 1_555 -0.269 -0.179 0.317 -4.019 -12.087 1.278 30 B_G6:C14_B B 6 ? B 14 ? 19 1 1 B U 7 1_555 B A 11 1_555 4.218 -1.805 0.218 0.212 3.463 -102.516 31 B_U7:A11_B B 7 ? B 11 ? 24 4 1 B G 8 1_555 B U 39 1_555 3.753 1.033 -0.491 7.016 23.721 99.640 32 B_G8:U39_B B 8 ? B 39 ? ? 5 1 A G 31 1_555 A C 64 1_555 -0.219 -0.180 -0.060 11.557 5.766 -0.768 33 A_G31:C64_A A 31 ? A 64 ? 19 1 1 A G 32 1_555 A U 62 1_555 -2.458 -0.675 0.121 6.718 -5.452 -4.482 34 A_G32:U62_A A 32 ? A 62 ? 28 1 1 A C 33 1_555 A G 61 1_555 0.215 -0.165 -0.157 7.448 -22.256 5.135 35 A_C33:G61_A A 33 ? A 61 ? 19 1 1 A U 34 1_555 A A 60 1_555 0.244 -0.153 0.156 -7.210 -10.406 -3.081 36 A_U34:A60_A A 34 ? A 60 ? 20 1 1 A A 36 1_555 A U 58 1_555 0.269 -0.231 0.885 10.617 -12.933 7.137 37 A_A36:U58_A A 36 ? A 58 ? 20 1 1 A U 37 1_555 A A 57 1_555 -0.150 -0.063 0.335 3.806 -13.478 -4.835 38 A_U37:A57_A A 37 ? A 57 ? 20 1 1 A A 38 1_555 A U 56 1_555 -0.001 -0.159 0.252 4.954 -6.878 -0.585 39 A_A38:U56_A A 38 ? A 56 ? 20 1 1 A C 40 1_555 A G 55 1_555 0.157 -0.111 -0.170 12.377 -21.828 1.858 40 A_C40:G55_A A 40 ? A 55 ? 19 1 1 A U 41 1_555 A A 54 1_555 -0.290 -0.177 0.332 2.303 -14.374 6.352 41 A_U41:A54_A A 41 ? A 54 ? 20 1 1 A A 42 1_555 A U 53 1_555 0.000 -0.289 0.165 4.895 -10.606 0.614 42 A_A42:U53_A A 42 ? A 53 ? 20 1 1 A A 43 1_555 A U 52 1_555 0.511 -0.191 0.207 3.871 -14.294 0.235 43 A_A43:U52_A A 43 ? A 52 ? 20 1 1 A U 44 1_555 A A 51 1_555 0.066 0.050 -0.026 3.612 -13.469 4.214 44 A_U44:A51_A A 44 ? A 51 ? 20 1 1 A C 45 1_555 A G 50 1_555 0.349 -0.162 -0.016 2.787 -3.566 -0.881 45 A_C45:G50_A A 45 ? A 50 ? 19 1 1 A G 46 1_555 A A 49 1_555 7.823 -5.288 1.025 11.416 -12.233 -45.863 46 A_G46:A49_A A 46 ? A 49 ? ? ? 1 A A 65 1_555 B U 71 1_555 0.384 -3.419 -0.959 28.322 6.152 65.041 47 A_A65:U71_B A 65 ? B 71 ? 23 3 1 A A 67 1_555 B U 70 1_555 -0.020 -0.057 0.291 3.981 -15.679 2.524 48 A_A67:U70_B A 67 ? B 70 ? 20 1 1 A C 68 1_555 B G 69 1_555 0.397 -0.242 -0.147 11.961 -18.192 1.428 49 A_C68:G69_B A 68 ? B 69 ? 19 1 1 A G 69 1_555 B C 68 1_555 -0.314 -0.231 -0.217 -8.951 -18.590 0.182 50 A_G69:C68_B A 69 ? B 68 ? 19 1 1 A U 70 1_555 B A 67 1_555 -0.055 -0.051 -0.089 4.133 -11.565 1.046 51 A_U70:A67_B A 70 ? B 67 ? 20 1 1 A A 73 1_555 A U 71 1_555 1.248 -3.372 -0.618 9.615 -3.112 74.178 52 A_A73:U71_A A 73 ? A 71 ? 23 3 1 A A 74 1_555 B G 66 1_555 -0.855 4.177 0.193 -26.618 -35.841 59.298 53 A_A74:G66_B A 74 ? B 66 ? ? ? 1 B G 31 1_555 B C 64 1_555 -0.748 -0.410 0.062 6.086 0.204 1.691 54 B_G31:C64_B B 31 ? B 64 ? 19 1 1 B G 32 1_555 B U 62 1_555 -2.436 -0.811 0.063 8.078 -11.810 -1.430 55 B_G32:U62_B B 32 ? B 62 ? 28 1 1 B C 33 1_555 B G 61 1_555 0.279 -0.328 -0.004 3.078 -24.487 1.466 56 B_C33:G61_B B 33 ? B 61 ? 19 1 1 B U 34 1_555 B A 60 1_555 -0.063 -0.177 0.079 -6.054 -13.805 -1.072 57 B_U34:A60_B B 34 ? B 60 ? 20 1 1 B A 36 1_555 B U 58 1_555 -0.094 -0.130 0.686 7.873 -8.430 6.037 58 B_A36:U58_B B 36 ? B 58 ? 20 1 1 B U 37 1_555 B A 57 1_555 -0.279 -0.175 0.169 5.044 -20.147 -4.655 59 B_U37:A57_B B 37 ? B 57 ? 20 1 1 B A 38 1_555 B U 56 1_555 0.079 -0.092 0.343 5.541 -4.987 -4.924 60 B_A38:U56_B B 38 ? B 56 ? 20 1 1 B C 40 1_555 B G 55 1_555 0.423 -0.274 -0.183 11.833 -19.819 0.902 61 B_C40:G55_B B 40 ? B 55 ? 19 1 1 B U 41 1_555 B A 54 1_555 -0.002 -0.121 -0.014 -3.845 -12.124 1.221 62 B_U41:A54_B B 41 ? B 54 ? 20 1 1 B A 42 1_555 B U 53 1_555 0.033 -0.122 -0.021 -5.024 -7.757 1.058 63 B_A42:U53_B B 42 ? B 53 ? 20 1 1 B A 43 1_555 B U 52 1_555 0.272 0.028 -0.326 -0.116 -18.485 2.719 64 B_A43:U52_B B 43 ? B 52 ? 20 1 1 B U 44 1_555 B A 51 1_555 0.173 -0.169 -0.064 0.285 -12.108 9.923 65 B_U44:A51_B B 44 ? B 51 ? 20 1 1 B C 45 1_555 B G 50 1_555 0.436 -0.196 -0.225 1.722 0.610 -0.958 66 B_C45:G50_B B 45 ? B 50 ? 19 1 1 B G 46 1_555 B A 49 1_555 7.191 -5.311 0.784 13.630 -5.723 -18.671 67 B_G46:A49_B B 46 ? B 49 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 39 1_555 A G 8 1_555 A A 11 1_555 A U 7 1_555 -3.968 -0.101 3.199 0.312 4.841 -45.851 -0.279 -5.041 3.218 -6.193 0.400 -46.093 1 AA_U39A11:U7G8_AA A 39 ? A 8 ? A 11 ? A 7 ? 1 A A 11 1_555 A U 7 1_555 A C 14 1_555 A G 6 1_555 1.778 -2.236 3.290 -2.219 -1.251 86.011 -1.610 -1.353 3.278 -0.917 1.627 86.041 2 AA_A11C14:G6U7_AA A 11 ? A 7 ? A 14 ? A 6 ? 1 A C 14 1_555 A G 6 1_555 A A 15 1_555 A U 5 1_555 -0.195 -1.210 3.217 0.470 9.980 36.340 -3.090 0.359 2.797 15.641 -0.736 37.644 3 AA_C14A15:U5G6_AA A 14 ? A 6 ? A 15 ? A 5 ? 1 A A 15 1_555 A U 5 1_555 A G 16 1_555 A C 4 1_555 0.874 -2.012 3.313 1.897 6.123 27.563 -5.476 -1.368 2.861 12.635 -3.914 28.285 4 AA_A15G16:C4U5_AA A 15 ? A 5 ? A 16 ? A 4 ? 1 A G 16 1_555 A C 4 1_555 A U 17 1_555 A A 3 1_555 -1.164 -1.873 3.210 -0.908 2.223 31.221 -3.875 1.991 3.105 4.123 1.684 31.311 5 AA_G16U17:A3C4_AA A 16 ? A 4 ? A 17 ? A 3 ? 1 A U 17 1_555 A A 3 1_555 A A 18 1_555 A U 2 1_555 0.993 -1.637 2.839 -0.530 9.726 28.907 -4.641 -1.972 2.169 18.820 1.026 30.471 6 AA_U17A18:U2A3_AA A 17 ? A 3 ? A 18 ? A 2 ? 1 A A 18 1_555 A U 2 1_555 A A 19 1_555 A U 1 1_555 -0.909 -1.969 3.165 0.748 4.398 21.426 -6.732 2.658 2.678 11.668 -1.983 21.880 7 AA_A18A19:U1U2_AA A 18 ? A 2 ? A 19 ? A 1 ? 1 A A 19 1_555 A U 1 1_555 A C 20 1_555 A G 30 1_555 -1.323 -1.130 3.582 5.673 2.277 118.331 -0.682 0.831 3.528 1.325 -3.302 118.428 8 AA_A19C20:G30U1_AA A 19 ? A 1 ? A 20 ? A 30 ? 1 A C 20 1_555 A G 30 1_555 B A 74 1_555 A G 29 1_555 2.910 2.760 0.634 155.322 -87.924 153.008 1.424 -1.376 0.890 -43.972 -77.679 179.646 9 AB_C20A74:G29G30_AA A 20 ? A 30 ? B 74 ? A 29 ? 1 B A 74 1_555 A G 29 1_555 A A 21 1_555 A U 28 1_555 -1.707 -2.790 -3.514 158.227 -33.396 56.839 -1.790 -0.941 -2.648 -17.681 -83.774 163.933 10 BA_A74A21:U28G29_AA B 74 ? A 29 ? A 21 ? A 28 ? 1 A A 21 1_555 A U 28 1_555 B C 77 1_555 A G 27 1_555 2.324 -2.181 3.284 -4.208 3.369 82.992 -1.723 -1.851 3.111 2.540 3.173 83.135 11 AB_A21C77:G27U28_AA A 21 ? A 28 ? B 77 ? A 27 ? 1 B C 77 1_555 A G 27 1_555 B A 78 1_555 A U 26 1_555 -0.306 -1.447 3.355 -0.333 13.418 33.005 -4.220 0.455 2.593 22.495 0.558 35.560 12 BB_C77A78:U26G27_AA B 77 ? A 27 ? B 78 ? A 26 ? 1 B A 78 1_555 A U 26 1_555 B U 79 1_555 A A 25 1_555 0.218 -1.152 3.059 0.452 6.310 31.598 -3.092 -0.321 2.785 11.445 -0.820 32.210 13 BB_A78U79:A25U26_AA B 78 ? A 26 ? B 79 ? A 25 ? 1 B U 79 1_555 A A 25 1_555 B G 80 1_555 A C 24 1_555 -0.066 -1.493 3.116 3.164 12.559 29.024 -4.723 0.623 2.272 23.630 -5.953 31.725 14 BB_U79G80:C24A25_AA B 79 ? A 25 ? B 80 ? A 24 ? 1 B G 80 1_555 A C 24 1_555 B U 81 1_555 A A 23 1_555 2.695 -1.273 -0.586 -75.739 -155.511 -53.035 0.410 1.460 -0.231 79.502 -38.720 -173.714 15 BB_G80U81:A23C24_AA B 80 ? A 24 ? B 81 ? A 23 ? 1 B U 81 1_555 A A 23 1_555 B A 23 1_555 A U 81 1_555 -3.872 -2.123 -4.610 -24.444 -160.488 -153.809 0.518 -1.854 -5.094 80.468 -12.256 -176.014 16 BB_U81A23:U81A23_AA B 81 ? A 23 ? B 23 ? A 81 ? 1 B A 23 1_555 A U 81 1_555 B C 24 1_555 A G 80 1_555 0.027 -1.274 3.254 0.278 4.737 33.370 -2.943 -0.002 3.050 8.197 -0.481 33.696 17 BB_A23C24:G80U81_AA B 23 ? A 81 ? B 24 ? A 80 ? 1 B C 24 1_555 A G 80 1_555 B A 25 1_555 A U 79 1_555 -0.086 -1.445 3.052 -2.405 10.499 28.144 -4.627 -0.257 2.371 20.657 4.733 30.095 18 BB_C24A25:U79G80_AA B 24 ? A 80 ? B 25 ? A 79 ? 1 B A 25 1_555 A U 79 1_555 B U 26 1_555 A A 78 1_555 -0.470 -1.026 3.205 1.324 8.427 34.296 -2.866 0.960 2.861 14.024 -2.203 35.310 19 BB_A25U26:A78U79_AA B 25 ? A 79 ? B 26 ? A 78 ? 1 B U 26 1_555 A A 78 1_555 B G 27 1_555 A C 77 1_555 0.355 -1.546 3.151 -1.470 10.795 34.844 -3.808 -0.750 2.558 17.505 2.383 36.457 20 BB_U26G27:C77A78_AA B 26 ? A 78 ? B 27 ? A 77 ? 1 B G 27 1_555 A C 77 1_555 B U 28 1_555 B A 21 1_555 -1.850 -2.269 3.363 5.098 0.433 86.146 -1.669 1.468 3.263 0.317 -3.730 86.268 21 BB_G27U28:A21C77_BA B 27 ? A 77 ? B 28 ? B 21 ? 1 B U 28 1_555 B A 21 1_555 B G 29 1_555 A A 75 1_555 2.103 -0.129 2.921 8.833 6.045 0.574 -14.265 8.579 1.817 49.097 -71.746 10.719 22 BB_U28G29:A75A21_AB B 28 ? B 21 ? B 29 ? A 75 ? 1 B G 29 1_555 A A 75 1_555 B G 30 1_555 B C 20 1_555 0.188 4.256 -0.258 171.824 -48.240 93.557 2.068 -0.306 -0.852 -24.176 -86.112 178.951 23 BB_G29G30:C20A75_BA B 29 ? A 75 ? B 30 ? B 20 ? 1 B G 30 1_555 B C 20 1_555 B U 1 1_555 B A 19 1_555 -2.581 -2.558 -1.630 87.997 -149.226 -33.062 0.332 -1.852 -1.320 76.695 45.226 -173.519 24 BB_G30U1:A19C20_BB B 30 ? B 20 ? B 1 ? B 19 ? 1 B U 1 1_555 B A 19 1_555 B U 2 1_555 B A 18 1_555 1.015 -2.308 2.904 3.458 4.214 22.557 -6.976 -1.511 2.561 10.575 -8.678 23.198 25 BB_U1U2:A18A19_BB B 1 ? B 19 ? B 2 ? B 18 ? 1 B U 2 1_555 B A 18 1_555 B A 3 1_555 B U 17 1_555 -0.965 -2.399 3.193 -2.557 0.959 28.035 -5.149 1.399 3.184 1.974 5.263 28.165 26 BB_U2A3:U17A18_BB B 2 ? B 18 ? B 3 ? B 17 ? 1 B A 3 1_555 B U 17 1_555 B C 4 1_555 B G 16 1_555 0.336 -1.540 3.241 0.525 4.478 34.849 -3.196 -0.481 3.031 7.439 -0.872 35.131 27 BB_A3C4:G16U17_BB B 3 ? B 17 ? B 4 ? B 16 ? 1 B C 4 1_555 B G 16 1_555 B U 5 1_555 B A 15 1_555 -0.458 -2.038 3.101 -0.600 5.163 25.523 -5.781 0.870 2.654 11.535 1.341 26.038 28 BB_C4U5:A15G16_BB B 4 ? B 16 ? B 5 ? B 15 ? 1 B U 5 1_555 B A 15 1_555 B G 6 1_555 B C 14 1_555 0.173 -1.430 3.339 -1.970 7.146 34.378 -3.411 -0.574 2.977 11.919 3.285 35.144 29 BB_U5G6:C14A15_BB B 5 ? B 15 ? B 6 ? B 14 ? 1 B G 6 1_555 B C 14 1_555 B U 7 1_555 B A 11 1_555 -1.943 -2.296 3.211 3.185 -0.755 89.507 -1.615 1.443 3.170 -0.536 -2.261 89.554 30 BB_G6U7:A11C14_BB B 6 ? B 14 ? B 7 ? B 11 ? 1 B U 7 1_555 B A 11 1_555 B G 8 1_555 B U 39 1_555 4.070 -0.070 3.239 0.896 3.106 -48.677 -0.147 4.996 3.167 -3.764 1.086 -48.778 31 BB_U7G8:U39A11_BB B 7 ? B 11 ? B 8 ? B 39 ? 1 A G 31 1_555 A C 64 1_555 A G 32 1_555 A U 62 1_555 1.969 -2.147 3.149 -5.592 8.064 47.738 -3.148 -2.765 2.544 9.843 6.826 48.678 32 AA_G31G32:U62C64_AA A 31 ? A 64 ? A 32 ? A 62 ? 1 A G 32 1_555 A U 62 1_555 A C 33 1_555 A G 61 1_555 0.032 -1.281 3.275 -1.170 8.994 42.561 -2.568 -0.152 2.956 12.225 1.590 43.472 33 AA_G32C33:G61U62_AA A 32 ? A 62 ? A 33 ? A 61 ? 1 A C 33 1_555 A G 61 1_555 A U 34 1_555 A A 60 1_555 -0.534 -1.276 3.614 -3.032 12.835 37.241 -3.487 0.415 3.059 19.370 4.576 39.429 34 AA_C33U34:A60G61_AA A 33 ? A 61 ? A 34 ? A 60 ? 1 A U 34 1_555 A A 60 1_555 A A 36 1_555 A U 58 1_555 0.150 1.782 2.945 -6.701 -5.882 67.120 1.799 -0.360 2.776 -5.296 6.033 67.641 35 AA_U34A36:U58A60_AA A 34 ? A 60 ? A 36 ? A 58 ? 1 A A 36 1_555 A U 58 1_555 A U 37 1_555 A A 57 1_555 -0.792 -1.565 3.405 2.434 -0.299 34.816 -2.563 1.702 3.357 -0.498 -4.062 34.900 36 AA_A36U37:A57U58_AA A 36 ? A 58 ? A 37 ? A 57 ? 1 A U 37 1_555 A A 57 1_555 A A 38 1_555 A U 56 1_555 -0.701 -1.793 3.014 -0.099 11.173 30.986 -4.752 1.224 2.252 20.111 0.178 32.893 37 AA_U37A38:U56A57_AA A 37 ? A 57 ? A 38 ? A 56 ? 1 A A 38 1_555 A U 56 1_555 A C 40 1_555 A G 55 1_555 -1.610 -0.719 3.077 2.809 -0.494 48.726 -0.835 2.147 2.992 -0.598 -3.401 48.804 38 AA_A38C40:G55U56_AA A 38 ? A 56 ? A 40 ? A 55 ? 1 A C 40 1_555 A G 55 1_555 A U 41 1_555 A A 54 1_555 -0.582 -2.039 3.405 -7.662 8.929 31.261 -5.008 -0.235 2.795 15.882 13.630 33.350 39 AA_C40U41:A54G55_AA A 40 ? A 55 ? A 41 ? A 54 ? 1 A U 41 1_555 A A 54 1_555 A A 42 1_555 A U 53 1_555 -0.386 -1.414 2.977 -0.255 10.372 31.450 -3.964 0.641 2.405 18.515 0.455 33.076 40 AA_U41A42:U53A54_AA A 41 ? A 54 ? A 42 ? A 53 ? 1 A A 42 1_555 A U 53 1_555 A A 43 1_555 A U 52 1_555 -0.210 -1.061 3.271 0.503 8.422 34.714 -2.905 0.413 2.939 13.862 -0.827 35.694 41 AA_A42A43:U52U53_AA A 42 ? A 53 ? A 43 ? A 52 ? 1 A A 43 1_555 A U 52 1_555 A U 44 1_555 A A 51 1_555 0.708 -1.539 3.161 2.275 7.441 31.171 -4.013 -0.904 2.773 13.584 -4.153 32.104 42 AA_A43U44:A51U52_AA A 43 ? A 52 ? A 44 ? A 51 ? 1 A U 44 1_555 A A 51 1_555 A C 45 1_555 A G 50 1_555 -0.457 -1.777 3.274 -1.209 7.782 31.541 -4.459 0.617 2.783 14.043 2.182 32.485 43 AA_U44C45:G50A51_AA A 44 ? A 51 ? A 45 ? A 50 ? 1 A C 45 1_555 A G 50 1_555 A G 46 1_555 A A 49 1_555 -4.178 -1.646 3.091 0.078 15.071 53.919 -2.526 4.466 2.576 16.266 -0.084 55.833 44 AA_C45G46:A49G50_AA A 45 ? A 50 ? A 46 ? A 49 ? 1 A A 65 1_555 B U 71 1_555 A A 67 1_555 B U 70 1_555 -2.416 -1.801 -2.593 134.550 -103.218 41.276 -1.806 0.035 -1.685 -53.660 -69.948 170.251 45 AA_A65A67:U70U71_BB A 65 ? B 71 ? A 67 ? B 70 ? 1 A A 67 1_555 B U 70 1_555 A C 68 1_555 B G 69 1_555 -1.014 -1.763 3.115 -2.708 -0.128 29.618 -3.409 1.428 3.200 -0.249 5.283 29.739 46 AA_A67C68:G69U70_BB A 67 ? B 70 ? A 68 ? B 69 ? 1 A C 68 1_555 B G 69 1_555 A G 69 1_555 B C 68 1_555 0.208 -1.924 3.631 1.158 18.218 30.392 -5.752 -0.179 2.173 31.442 -1.999 35.342 47 AA_C68G69:C68G69_BB A 68 ? B 69 ? A 69 ? B 68 ? 1 A G 69 1_555 B C 68 1_555 A U 70 1_555 B A 67 1_555 -0.299 -0.784 2.997 -1.627 8.913 30.075 -2.935 0.281 2.673 16.706 3.050 31.380 48 AA_G69U70:A67C68_BB A 69 ? B 68 ? A 70 ? B 67 ? 1 A U 70 1_555 B A 67 1_555 A A 73 1_555 A U 71 1_555 -6.517 -1.030 1.578 17.663 -23.781 13.438 -2.339 11.288 -2.118 -53.091 -39.433 32.467 49 AA_U70A73:U71A67_AB A 70 ? B 67 ? A 73 ? A 71 ? 1 A A 73 1_555 A U 71 1_555 A A 74 1_555 B G 66 1_555 3.575 -2.010 3.055 4.689 26.583 63.282 -2.664 -3.032 2.376 24.211 -4.271 68.245 50 AA_A73A74:G66U71_BA A 73 ? A 71 ? A 74 ? B 66 ? 1 B G 31 1_555 B C 64 1_555 B G 32 1_555 B U 62 1_555 2.014 -1.248 3.287 -5.312 2.212 46.452 -1.749 -2.961 2.993 2.792 6.704 46.787 51 BB_G31G32:U62C64_BB B 31 ? B 64 ? B 32 ? B 62 ? 1 B G 32 1_555 B U 62 1_555 B C 33 1_555 B G 61 1_555 -0.069 -1.216 3.344 -2.784 7.263 44.221 -2.249 -0.160 3.115 9.560 3.664 44.866 52 BB_G32C33:G61U62_BB B 32 ? B 62 ? B 33 ? B 61 ? 1 B C 33 1_555 B G 61 1_555 B U 34 1_555 B A 60 1_555 -0.424 -1.284 3.431 0.332 12.162 34.923 -3.650 0.714 2.838 19.546 -0.534 36.919 53 BB_C33U34:A60G61_BB B 33 ? B 61 ? B 34 ? B 60 ? 1 B U 34 1_555 B A 60 1_555 B A 36 1_555 B U 58 1_555 -0.055 1.975 3.029 -8.414 -4.529 66.188 1.956 -0.252 2.892 -4.125 7.664 66.796 54 BB_U34A36:U58A60_BB B 34 ? B 60 ? B 36 ? B 58 ? 1 B A 36 1_555 B U 58 1_555 B U 37 1_555 B A 57 1_555 -0.832 -1.331 3.291 2.211 0.164 35.362 -2.211 1.691 3.228 0.269 -3.635 35.429 55 BB_A36U37:A57U58_BB B 36 ? B 58 ? B 37 ? B 57 ? 1 B U 37 1_555 B A 57 1_555 B A 38 1_555 B U 56 1_555 -0.910 -1.816 3.130 -3.137 11.453 34.237 -4.350 1.074 2.486 18.768 5.140 36.179 56 BB_U37A38:U56A57_BB B 37 ? B 57 ? B 38 ? B 56 ? 1 B A 38 1_555 B U 56 1_555 B C 40 1_555 B G 55 1_555 -1.574 -0.641 3.017 2.298 0.772 50.758 -0.797 1.981 2.939 0.900 -2.679 50.812 57 BB_A38C40:G55U56_BB B 38 ? B 56 ? B 40 ? B 55 ? 1 B C 40 1_555 B G 55 1_555 B U 41 1_555 B A 54 1_555 -0.686 -1.981 3.562 -3.975 9.643 32.898 -4.870 0.528 2.942 16.518 6.808 34.468 58 BB_C40U41:A54G55_BB B 40 ? B 55 ? B 41 ? B 54 ? 1 B U 41 1_555 B A 54 1_555 B A 42 1_555 B U 53 1_555 -0.168 -1.276 3.231 -0.236 10.922 32.049 -3.829 0.254 2.667 19.102 0.413 33.813 59 BB_U41A42:U53A54_BB B 41 ? B 54 ? B 42 ? B 53 ? 1 B A 42 1_555 B U 53 1_555 B A 43 1_555 B U 52 1_555 -0.002 -1.124 3.224 3.228 8.229 30.353 -3.505 0.568 2.815 15.313 -6.007 31.585 60 BB_A42A43:U52U53_BB B 42 ? B 53 ? B 43 ? B 52 ? 1 B A 43 1_555 B U 52 1_555 B U 44 1_555 B A 51 1_555 0.825 -1.057 3.224 -1.759 13.157 31.361 -3.742 -1.669 2.541 23.088 3.086 33.989 61 BB_A43U44:A51U52_BB B 43 ? B 52 ? B 44 ? B 51 ? 1 B U 44 1_555 B A 51 1_555 B C 45 1_555 B G 50 1_555 -0.590 -1.602 3.389 0.116 6.236 32.575 -3.847 1.054 3.037 10.991 -0.204 33.150 62 BB_U44C45:G50A51_BB B 44 ? B 51 ? B 45 ? B 50 ? 1 B C 45 1_555 B G 50 1_555 B G 46 1_555 B A 49 1_555 -1.750 -0.986 3.047 -2.437 9.394 54.916 -1.555 1.743 2.924 10.098 2.620 55.701 63 BB_C45G46:A49G50_BB B 45 ? B 50 ? B 46 ? B 49 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JQ6 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #