data_6JQA # _entry.id 6JQA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.309 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6JQA WWPDB D_1300011544 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JQA _pdbx_database_status.recvd_initial_deposition_date 2019-03-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Miyatake, H.' 1 0000-0001-8872-9784 'Maejima, K.' 2 0000-0001-7327-4481 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_id_ASTM BBRCA9 _citation.journal_id_CSD 0146 _citation.journal_id_ISSN 1090-2104 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 513 _citation.language ? _citation.page_first 952 _citation.page_last 957 _citation.title 'Crystal structure of phyllogen, a phyllody-inducing effector protein of phytoplasma.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2019.04.060 _citation.pdbx_database_id_PubMed 31010685 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Iwabuchi, N.' 1 ? primary 'Maejima, K.' 2 ? primary 'Kitazawa, Y.' 3 ? primary 'Miyatake, H.' 4 ? primary 'Nishikawa, M.' 5 ? primary 'Tokuda, R.' 6 ? primary 'Koinuma, H.' 7 ? primary 'Miyazaki, A.' 8 ? primary 'Nijo, T.' 9 ? primary 'Oshima, K.' 10 ? primary 'Yamaji, Y.' 11 ? primary 'Namba, S.' 12 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6JQA _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.843 _cell.length_a_esd ? _cell.length_b 60.664 _cell.length_b_esd ? _cell.length_c 124.874 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phytoplasmal effector causing phyllody 1' 11170.568 1 ? ? ? 'The crystal was iodine labelled for I-SAD phasing by HYPER-VIL' 2 polymer man 'Phytoplasmal effector causing phyllody 1' 11422.362 2 ? ? ? ? 3 polymer man 'Phytoplasmal effector causing phyllody 1' 11044.673 1 ? ? ? ? 4 non-polymer syn 'IODIDE ION' 126.904 19 ? ? ? ? 5 water nat water 18.015 16 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;MNKDIASASNNNQNITN(IYR)SIEENIINLK(IYR)KIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQ KEQLKT(TYI)QKLLKTLNDENN ; ;MNKDIASASNNNQNITNYSIEENIINLKYKIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQKEQLKTYQ KLLKTLNDENN ; A ? 2 'polypeptide(L)' no yes ;MNKDIASASNNNQNITN(TYI)SIEENIINLK(TYI)KIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQ KEQLKT(TYI)QKLLKTLNDENN ; ;MNKDIASASNNNQNITNYSIEENIINLKYKIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQKEQLKTYQ KLLKTLNDENN ; B,C ? 3 'polypeptide(L)' no yes ;MNKDIASASNNNQNITNYSIEENIINLK(IYR)KIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQKEQL KT(TYI)QKLLKTLNDENN ; ;MNKDIASASNNNQNITNYSIEENIINLKYKIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQKEQLKTYQ KLLKTLNDENN ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 LYS n 1 4 ASP n 1 5 ILE n 1 6 ALA n 1 7 SER n 1 8 ALA n 1 9 SER n 1 10 ASN n 1 11 ASN n 1 12 ASN n 1 13 GLN n 1 14 ASN n 1 15 ILE n 1 16 THR n 1 17 ASN n 1 18 IYR n 1 19 SER n 1 20 ILE n 1 21 GLU n 1 22 GLU n 1 23 ASN n 1 24 ILE n 1 25 ILE n 1 26 ASN n 1 27 LEU n 1 28 LYS n 1 29 IYR n 1 30 LYS n 1 31 ILE n 1 32 ARG n 1 33 LYS n 1 34 ASN n 1 35 ALA n 1 36 VAL n 1 37 LYS n 1 38 LYS n 1 39 ILE n 1 40 ASN n 1 41 THR n 1 42 GLU n 1 43 ARG n 1 44 GLU n 1 45 ILE n 1 46 GLN n 1 47 GLN n 1 48 LEU n 1 49 SER n 1 50 ASN n 1 51 ASN n 1 52 ASP n 1 53 PRO n 1 54 ASN n 1 55 LYS n 1 56 ASN n 1 57 THR n 1 58 LEU n 1 59 LEU n 1 60 ALA n 1 61 LEU n 1 62 LYS n 1 63 GLN n 1 64 ASN n 1 65 LEU n 1 66 GLU n 1 67 ASN n 1 68 LEU n 1 69 ILE n 1 70 HIS n 1 71 ASN n 1 72 GLN n 1 73 LYS n 1 74 GLU n 1 75 GLN n 1 76 LEU n 1 77 LYS n 1 78 THR n 1 79 TYI n 1 80 GLN n 1 81 LYS n 1 82 LEU n 1 83 LEU n 1 84 LYS n 1 85 THR n 1 86 LEU n 1 87 ASN n 1 88 ASP n 1 89 GLU n 1 90 ASN n 1 91 ASN n 2 1 MET n 2 2 ASN n 2 3 LYS n 2 4 ASP n 2 5 ILE n 2 6 ALA n 2 7 SER n 2 8 ALA n 2 9 SER n 2 10 ASN n 2 11 ASN n 2 12 ASN n 2 13 GLN n 2 14 ASN n 2 15 ILE n 2 16 THR n 2 17 ASN n 2 18 TYI n 2 19 SER n 2 20 ILE n 2 21 GLU n 2 22 GLU n 2 23 ASN n 2 24 ILE n 2 25 ILE n 2 26 ASN n 2 27 LEU n 2 28 LYS n 2 29 TYI n 2 30 LYS n 2 31 ILE n 2 32 ARG n 2 33 LYS n 2 34 ASN n 2 35 ALA n 2 36 VAL n 2 37 LYS n 2 38 LYS n 2 39 ILE n 2 40 ASN n 2 41 THR n 2 42 GLU n 2 43 ARG n 2 44 GLU n 2 45 ILE n 2 46 GLN n 2 47 GLN n 2 48 LEU n 2 49 SER n 2 50 ASN n 2 51 ASN n 2 52 ASP n 2 53 PRO n 2 54 ASN n 2 55 LYS n 2 56 ASN n 2 57 THR n 2 58 LEU n 2 59 LEU n 2 60 ALA n 2 61 LEU n 2 62 LYS n 2 63 GLN n 2 64 ASN n 2 65 LEU n 2 66 GLU n 2 67 ASN n 2 68 LEU n 2 69 ILE n 2 70 HIS n 2 71 ASN n 2 72 GLN n 2 73 LYS n 2 74 GLU n 2 75 GLN n 2 76 LEU n 2 77 LYS n 2 78 THR n 2 79 TYI n 2 80 GLN n 2 81 LYS n 2 82 LEU n 2 83 LEU n 2 84 LYS n 2 85 THR n 2 86 LEU n 2 87 ASN n 2 88 ASP n 2 89 GLU n 2 90 ASN n 2 91 ASN n 3 1 MET n 3 2 ASN n 3 3 LYS n 3 4 ASP n 3 5 ILE n 3 6 ALA n 3 7 SER n 3 8 ALA n 3 9 SER n 3 10 ASN n 3 11 ASN n 3 12 ASN n 3 13 GLN n 3 14 ASN n 3 15 ILE n 3 16 THR n 3 17 ASN n 3 18 TYR n 3 19 SER n 3 20 ILE n 3 21 GLU n 3 22 GLU n 3 23 ASN n 3 24 ILE n 3 25 ILE n 3 26 ASN n 3 27 LEU n 3 28 LYS n 3 29 IYR n 3 30 LYS n 3 31 ILE n 3 32 ARG n 3 33 LYS n 3 34 ASN n 3 35 ALA n 3 36 VAL n 3 37 LYS n 3 38 LYS n 3 39 ILE n 3 40 ASN n 3 41 THR n 3 42 GLU n 3 43 ARG n 3 44 GLU n 3 45 ILE n 3 46 GLN n 3 47 GLN n 3 48 LEU n 3 49 SER n 3 50 ASN n 3 51 ASN n 3 52 ASP n 3 53 PRO n 3 54 ASN n 3 55 LYS n 3 56 ASN n 3 57 THR n 3 58 LEU n 3 59 LEU n 3 60 ALA n 3 61 LEU n 3 62 LYS n 3 63 GLN n 3 64 ASN n 3 65 LEU n 3 66 GLU n 3 67 ASN n 3 68 LEU n 3 69 ILE n 3 70 HIS n 3 71 ASN n 3 72 GLN n 3 73 LYS n 3 74 GLU n 3 75 GLN n 3 76 LEU n 3 77 LYS n 3 78 THR n 3 79 TYI n 3 80 GLN n 3 81 LYS n 3 82 LEU n 3 83 LEU n 3 84 LYS n 3 85 THR n 3 86 LEU n 3 87 ASN n 3 88 ASP n 3 89 GLU n 3 90 ASN n 3 91 ASN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 91 ? ? PHYL1 ? ? ? ? ? ? 'Onion yellows phytoplasma OY-W' 428984 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pGEX-4T-1 ? ? 2 1 sample 'Biological sequence' 1 91 ? ? PHYL1 ? ? ? ? ? ? 'Onion yellows phytoplasma OY-W' 428984 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pGEX-4T-1 ? ? 3 1 sample 'Biological sequence' 1 91 ? ? PHYL1 ? ? ? ? ? ? 'Onion yellows phytoplasma OY-W' 428984 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? plasmid ? ? ? pGEX-4T-1 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP X5IFG3_ONYPH X5IFG3 ? 1 ;MNKDIASASNNNQNITNYSIEENIINLKYKIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQKEQLKTYQ KLLKTLNDENN ; 35 2 UNP X5IFG3_ONYPH X5IFG3 ? 2 ;MNKDIASASNNNQNITNYSIEENIINLKYKIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQKEQLKTYQ KLLKTLNDENN ; 35 3 UNP X5IFG3_ONYPH X5IFG3 ? 3 ;MNKDIASASNNNQNITNYSIEENIINLKYKIRKNAVKKINTEREIQQLSNNDPNKNTLLALKQNLENLIHNQKEQLKTYQ KLLKTLNDENN ; 35 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6JQA A 1 ? 91 ? X5IFG3 35 ? 125 ? 1 91 2 2 6JQA B 1 ? 91 ? X5IFG3 35 ? 125 ? 1 91 3 2 6JQA C 1 ? 91 ? X5IFG3 35 ? 125 ? 1 91 4 3 6JQA D 1 ? 91 ? X5IFG3 35 ? 125 ? 1 91 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 IYR 'L-peptide linking' n 3-IODO-TYROSINE ? 'C9 H10 I N O3' 307.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYI 'L-peptide linking' n 3,5-DIIODOTYROSINE ? 'C9 H9 I2 N O3' 432.982 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JQA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 36.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100mM sodium citrate pH 5.0, 2.1M ammonium sulfate, 250mM MgCl2, 2.5% (v/v) glycerol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-10-27 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.7 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.7 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_synchrotron_site SLS # _reflns.B_iso_Wilson_estimate 44.03 _reflns.entry_id 6JQA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.402 _reflns.d_resolution_low 43.509 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 194152 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 85.56 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.9 _reflns.pdbx_Rmerge_I_obs 0.1374 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.21 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.147 _reflns.pdbx_Rpim_I_all 0.05178 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.402 _reflns_shell.d_res_low 2.488 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.91 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 20164 _reflns_shell.percent_possible_all 52.53 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.9488 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 8.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.013 _reflns_shell.pdbx_Rpim_I_all 0.3528 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.713 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JQA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.402 _refine.ls_d_res_low 43.509 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20966 _refine.ls_number_reflns_R_free 2093 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 85.54 _refine.ls_percent_reflns_R_free 9.98 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2719 _refine.ls_R_factor_R_free 0.3025 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2685 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.52 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.78 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.32 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.402 _refine_hist.d_res_low 43.509 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 2829 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 2794 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.016 ? 2810 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.767 ? 3790 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 4.155 ? 1775 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.063 ? 436 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 497 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.4020 2.4578 . . 87 723 50.00 . . . 0.2864 . 0.2974 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4578 2.5193 . . 103 897 60.00 . . . 0.3364 . 0.3018 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5193 2.5874 . . 115 1014 71.00 . . . 0.3403 . 0.2970 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5874 2.6635 . . 126 1109 75.00 . . . 0.3074 . 0.3043 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6635 2.7495 . . 123 1164 78.00 . . . 0.3592 . 0.3001 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7495 2.8477 . . 139 1247 84.00 . . . 0.3106 . 0.2846 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8477 2.9617 . . 140 1292 90.00 . . . 0.2910 . 0.2755 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9617 3.0965 . . 146 1340 90.00 . . . 0.3391 . 0.2726 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0965 3.2597 . . 147 1374 94.00 . . . 0.2956 . 0.2754 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2597 3.4638 . . 157 1424 96.00 . . . 0.3120 . 0.2580 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4638 3.7312 . . 159 1453 98.00 . . . 0.3424 . 0.2565 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7312 4.1064 . . 160 1431 99.00 . . . 0.2416 . 0.2355 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1064 4.7000 . . 167 1481 100.00 . . . 0.2120 . 0.2104 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.7000 5.9191 . . 161 1452 99.00 . . . 0.3144 . 0.2992 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.9191 43.5164 . . 163 1472 99.00 . . . 0.3868 . 0.3082 . . . . . . . . . . # _struct.entry_id 6JQA _struct.title 'Crystal structure of phyllogen, a phyllody inducing effector protein of phytoplasma.' _struct.pdbx_descriptor 'Phytoplasmal effector causing phyllody 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JQA _struct_keywords.text 'Phytoplasma, Phyllody, Phyllogen, PHYL1, MADS-domain transcription factor, TRANSCRIPTION' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 4 ? S N N 4 ? T N N 4 ? U N N 4 ? V N N 4 ? W N N 4 ? X N N 5 ? Y N N 5 ? Z N N 5 ? AA N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 13 ? GLN A 47 ? GLN A 13 GLN A 47 1 ? 35 HELX_P HELX_P2 AA2 ASP A 52 ? LYS A 84 ? ASP A 52 LYS A 84 1 ? 33 HELX_P HELX_P3 AA3 ALA B 8 ? ASN B 12 ? ALA B 8 ASN B 12 5 ? 5 HELX_P HELX_P4 AA4 SER B 19 ? LEU B 48 ? SER B 19 LEU B 48 1 ? 30 HELX_P HELX_P5 AA5 ASP B 52 ? LEU B 86 ? ASP B 52 LEU B 86 1 ? 35 HELX_P HELX_P6 AA6 ILE C 20 ? LEU C 48 ? ILE C 20 LEU C 48 1 ? 29 HELX_P HELX_P7 AA7 ASN C 54 ? ASN C 87 ? ASN C 54 ASN C 87 1 ? 34 HELX_P HELX_P8 AA8 GLN D 13 ? GLU D 44 ? GLN D 13 GLU D 44 1 ? 32 HELX_P HELX_P9 AA9 ILE D 45 ? GLN D 47 ? ILE D 45 GLN D 47 5 ? 3 HELX_P HELX_P10 AB1 PRO D 53 ? THR D 85 ? PRO D 53 THR D 85 1 ? 33 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ASN 17 C ? ? ? 1_555 A IYR 18 N ? ? A ASN 17 A IYR 18 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale both ? A IYR 18 C ? ? ? 1_555 A SER 19 N ? ? A IYR 18 A SER 19 1_555 ? ? ? ? ? ? ? 1.337 ? covale3 covale both ? A LYS 28 C ? ? ? 1_555 A IYR 29 N ? ? A LYS 28 A IYR 29 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A IYR 29 C ? ? ? 1_555 A LYS 30 N ? ? A IYR 29 A LYS 30 1_555 ? ? ? ? ? ? ? 1.330 ? covale5 covale both ? A THR 78 C ? ? ? 1_555 A TYI 79 N ? ? A THR 78 A TYI 79 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale both ? A TYI 79 C ? ? ? 1_555 A GLN 80 N ? ? A TYI 79 A GLN 80 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale both ? B ASN 17 C ? ? ? 1_555 B TYI 18 N ? ? B ASN 17 B TYI 18 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale both ? B TYI 18 C ? ? ? 1_555 B SER 19 N ? ? B TYI 18 B SER 19 1_555 ? ? ? ? ? ? ? 1.332 ? covale9 covale both ? B LYS 28 C ? ? ? 1_555 B TYI 29 N ? ? B LYS 28 B TYI 29 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale both ? B TYI 29 C ? ? ? 1_555 B LYS 30 N ? ? B TYI 29 B LYS 30 1_555 ? ? ? ? ? ? ? 1.328 ? covale11 covale both ? B THR 78 C ? ? ? 1_555 B TYI 79 N ? ? B THR 78 B TYI 79 1_555 ? ? ? ? ? ? ? 1.317 ? covale12 covale both ? B TYI 79 C ? ? ? 1_555 B GLN 80 N ? ? B TYI 79 B GLN 80 1_555 ? ? ? ? ? ? ? 1.341 ? covale13 covale both ? C ASN 17 C ? ? ? 1_555 C TYI 18 N ? ? C ASN 17 C TYI 18 1_555 ? ? ? ? ? ? ? 1.332 ? covale14 covale both ? C TYI 18 C ? ? ? 1_555 C SER 19 N ? ? C TYI 18 C SER 19 1_555 ? ? ? ? ? ? ? 1.325 ? covale15 covale both ? C LYS 28 C ? ? ? 1_555 C TYI 29 N ? ? C LYS 28 C TYI 29 1_555 ? ? ? ? ? ? ? 1.334 ? covale16 covale both ? C TYI 29 C ? ? ? 1_555 C LYS 30 N ? ? C TYI 29 C LYS 30 1_555 ? ? ? ? ? ? ? 1.329 ? covale17 covale both ? C THR 78 C ? ? ? 1_555 C TYI 79 N ? ? C THR 78 C TYI 79 1_555 ? ? ? ? ? ? ? 1.331 ? covale18 covale both ? C TYI 79 C ? ? ? 1_555 C GLN 80 N ? ? C TYI 79 C GLN 80 1_555 ? ? ? ? ? ? ? 1.341 ? covale19 covale both ? D LYS 28 C ? ? ? 1_555 D IYR 29 N ? ? D LYS 28 D IYR 29 1_555 ? ? ? ? ? ? ? 1.333 ? covale20 covale both ? D IYR 29 C ? ? ? 1_555 D LYS 30 N ? ? D IYR 29 D LYS 30 1_555 ? ? ? ? ? ? ? 1.331 ? covale21 covale both ? D THR 78 C ? ? ? 1_555 D TYI 79 N ? ? D THR 78 D TYI 79 1_555 ? ? ? ? ? ? ? 1.331 ? covale22 covale both ? D TYI 79 C ? ? ? 1_555 D GLN 80 N ? ? D TYI 79 D GLN 80 1_555 ? ? ? ? ? ? ? 1.318 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A IOD 101 ? 1 'binding site for residue IOD A 101' AC2 Software A IOD 102 ? 2 'binding site for residue IOD A 102' AC3 Software A IOD 103 ? 4 'binding site for residue IOD A 103' AC4 Software B IOD 101 ? 2 'binding site for residue IOD B 101' AC5 Software B IOD 102 ? 4 'binding site for residue IOD B 102' AC6 Software B IOD 103 ? 4 'binding site for residue IOD B 103' AC7 Software B IOD 104 ? 3 'binding site for residue IOD B 104' AC8 Software B IOD 105 ? 4 'binding site for residue IOD B 105' AC9 Software B IOD 106 ? 3 'binding site for residue IOD B 106' AD1 Software B IOD 107 ? 1 'binding site for residue IOD B 107' AD2 Software B IOD 108 ? 3 'binding site for residue IOD B 108' AD3 Software C IOD 102 ? 2 'binding site for residue IOD C 102' AD4 Software D IOD 101 ? 3 'binding site for residue IOD D 101' AD5 Software D IOD 102 ? 2 'binding site for residue IOD D 102' AD6 Software D IOD 103 ? 1 'binding site for residue IOD D 103' AD7 Software D IOD 104 ? 3 'binding site for residue IOD D 104' AD8 Software D IOD 105 ? 4 'binding site for residue IOD D 105' AD9 Software D IOD 106 ? 1 'binding site for residue IOD D 106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 GLU A 42 ? GLU A 42 . ? 1_555 ? 2 AC2 2 IOD G . ? IOD A 103 . ? 1_555 ? 3 AC2 2 IOD I . ? IOD B 102 . ? 1_555 ? 4 AC3 4 IYR A 29 ? IYR A 29 . ? 1_555 ? 5 AC3 4 GLN A 47 ? GLN A 47 . ? 3_554 ? 6 AC3 4 IOD F . ? IOD A 102 . ? 1_555 ? 7 AC3 4 IOD I . ? IOD B 102 . ? 1_555 ? 8 AC4 2 IOD M . ? IOD B 106 . ? 3_544 ? 9 AC4 2 HOH Y . ? HOH B 203 . ? 1_555 ? 10 AC5 4 ARG A 43 ? ARG A 43 . ? 3_554 ? 11 AC5 4 IOD F . ? IOD A 102 . ? 1_555 ? 12 AC5 4 IOD G . ? IOD A 103 . ? 1_555 ? 13 AC5 4 IOD J . ? IOD B 103 . ? 1_555 ? 14 AC6 4 ARG A 43 ? ARG A 43 . ? 3_554 ? 15 AC6 4 ILE B 39 ? ILE B 39 . ? 1_555 ? 16 AC6 4 IOD I . ? IOD B 102 . ? 1_555 ? 17 AC6 4 IOD K . ? IOD B 104 . ? 1_555 ? 18 AC7 3 HOH X . ? HOH A 203 . ? 3_554 ? 19 AC7 3 IOD J . ? IOD B 103 . ? 1_555 ? 20 AC7 3 IOD L . ? IOD B 105 . ? 3_554 ? 21 AC8 4 HOH X . ? HOH A 203 . ? 1_555 ? 22 AC8 4 ILE B 25 ? ILE B 25 . ? 1_555 ? 23 AC8 4 IOD K . ? IOD B 104 . ? 3_544 ? 24 AC8 4 IOD M . ? IOD B 106 . ? 3_544 ? 25 AC9 3 TYI B 29 ? TYI B 29 . ? 3_554 ? 26 AC9 3 IOD H . ? IOD B 101 . ? 3_554 ? 27 AC9 3 IOD L . ? IOD B 105 . ? 3_554 ? 28 AD1 1 LEU B 58 ? LEU B 58 . ? 1_555 ? 29 AD2 3 ASN A 14 ? ASN A 14 . ? 1_555 ? 30 AD2 3 GLU B 44 ? GLU B 44 . ? 1_555 ? 31 AD2 3 LEU B 58 ? LEU B 58 . ? 1_555 ? 32 AD3 2 ILE C 25 ? ILE C 25 . ? 4_455 ? 33 AD3 2 LYS C 28 ? LYS C 28 . ? 4_455 ? 34 AD4 3 ARG C 32 ? ARG C 32 . ? 4_555 ? 35 AD4 3 IOD S . ? IOD D 102 . ? 1_555 ? 36 AD4 3 HOH AA . ? HOH D 206 . ? 1_555 ? 37 AD5 2 ILE D 69 ? ILE D 69 . ? 1_555 ? 38 AD5 2 IOD R . ? IOD D 101 . ? 1_555 ? 39 AD6 1 GLU D 42 ? GLU D 42 . ? 1_555 ? 40 AD7 3 ARG C 43 ? ARG C 43 . ? 4_555 ? 41 AD7 3 GLU C 44 ? GLU C 44 . ? 4_555 ? 42 AD7 3 GLU D 21 ? GLU D 21 . ? 4_555 ? 43 AD8 4 ASN B 67 ? ASN B 67 . ? 1_555 ? 44 AD8 4 ASN B 71 ? ASN B 71 . ? 1_555 ? 45 AD8 4 ASN D 67 ? ASN D 67 . ? 1_555 ? 46 AD8 4 ASN D 71 ? ASN D 71 . ? 1_555 ? 47 AD9 1 HIS D 70 ? HIS D 70 . ? 1_555 ? # _atom_sites.entry_id 6JQA _atom_sites.fract_transf_matrix[1][1] 0.023341 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016484 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008008 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H I N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ASN 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 ASP 4 4 ? ? ? A . n A 1 5 ILE 5 5 ? ? ? A . n A 1 6 ALA 6 6 ? ? ? A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 IYR 18 18 18 IYR IYR A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 IYR 29 29 29 IYR IYR A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLN 63 63 63 GLN GLN A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 TYI 79 79 79 TYI TYI A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 ASN 91 91 91 ASN ASN A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 ASN 2 2 ? ? ? B . n B 2 3 LYS 3 3 ? ? ? B . n B 2 4 ASP 4 4 4 ASP ASP B . n B 2 5 ILE 5 5 5 ILE ILE B . n B 2 6 ALA 6 6 6 ALA ALA B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 ALA 8 8 8 ALA ALA B . n B 2 9 SER 9 9 9 SER SER B . n B 2 10 ASN 10 10 10 ASN ASN B . n B 2 11 ASN 11 11 11 ASN ASN B . n B 2 12 ASN 12 12 12 ASN ASN B . n B 2 13 GLN 13 13 13 GLN GLN B . n B 2 14 ASN 14 14 14 ASN ASN B . n B 2 15 ILE 15 15 15 ILE ILE B . n B 2 16 THR 16 16 16 THR THR B . n B 2 17 ASN 17 17 17 ASN ASN B . n B 2 18 TYI 18 18 18 TYI TYI B . n B 2 19 SER 19 19 19 SER SER B . n B 2 20 ILE 20 20 20 ILE ILE B . n B 2 21 GLU 21 21 21 GLU GLU B . n B 2 22 GLU 22 22 22 GLU GLU B . n B 2 23 ASN 23 23 23 ASN ASN B . n B 2 24 ILE 24 24 24 ILE ILE B . n B 2 25 ILE 25 25 25 ILE ILE B . n B 2 26 ASN 26 26 26 ASN ASN B . n B 2 27 LEU 27 27 27 LEU LEU B . n B 2 28 LYS 28 28 28 LYS LYS B . n B 2 29 TYI 29 29 29 TYI TYI B . n B 2 30 LYS 30 30 30 LYS LYS B . n B 2 31 ILE 31 31 31 ILE ILE B . n B 2 32 ARG 32 32 32 ARG ARG B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 ASN 34 34 34 ASN ASN B . n B 2 35 ALA 35 35 35 ALA ALA B . n B 2 36 VAL 36 36 36 VAL VAL B . n B 2 37 LYS 37 37 37 LYS LYS B . n B 2 38 LYS 38 38 38 LYS LYS B . n B 2 39 ILE 39 39 39 ILE ILE B . n B 2 40 ASN 40 40 40 ASN ASN B . n B 2 41 THR 41 41 41 THR THR B . n B 2 42 GLU 42 42 42 GLU GLU B . n B 2 43 ARG 43 43 43 ARG ARG B . n B 2 44 GLU 44 44 44 GLU GLU B . n B 2 45 ILE 45 45 45 ILE ILE B . n B 2 46 GLN 46 46 46 GLN GLN B . n B 2 47 GLN 47 47 47 GLN GLN B . n B 2 48 LEU 48 48 48 LEU LEU B . n B 2 49 SER 49 49 49 SER SER B . n B 2 50 ASN 50 50 50 ASN ASN B . n B 2 51 ASN 51 51 51 ASN ASN B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 PRO 53 53 53 PRO PRO B . n B 2 54 ASN 54 54 54 ASN ASN B . n B 2 55 LYS 55 55 55 LYS LYS B . n B 2 56 ASN 56 56 56 ASN ASN B . n B 2 57 THR 57 57 57 THR THR B . n B 2 58 LEU 58 58 58 LEU LEU B . n B 2 59 LEU 59 59 59 LEU LEU B . n B 2 60 ALA 60 60 60 ALA ALA B . n B 2 61 LEU 61 61 61 LEU LEU B . n B 2 62 LYS 62 62 62 LYS LYS B . n B 2 63 GLN 63 63 63 GLN GLN B . n B 2 64 ASN 64 64 64 ASN ASN B . n B 2 65 LEU 65 65 65 LEU LEU B . n B 2 66 GLU 66 66 66 GLU GLU B . n B 2 67 ASN 67 67 67 ASN ASN B . n B 2 68 LEU 68 68 68 LEU LEU B . n B 2 69 ILE 69 69 69 ILE ILE B . n B 2 70 HIS 70 70 70 HIS HIS B . n B 2 71 ASN 71 71 71 ASN ASN B . n B 2 72 GLN 72 72 72 GLN GLN B . n B 2 73 LYS 73 73 73 LYS LYS B . n B 2 74 GLU 74 74 74 GLU GLU B . n B 2 75 GLN 75 75 75 GLN GLN B . n B 2 76 LEU 76 76 76 LEU LEU B . n B 2 77 LYS 77 77 77 LYS LYS B . n B 2 78 THR 78 78 78 THR THR B . n B 2 79 TYI 79 79 79 TYI TYI B . n B 2 80 GLN 80 80 80 GLN GLN B . n B 2 81 LYS 81 81 81 LYS LYS B . n B 2 82 LEU 82 82 82 LEU LEU B . n B 2 83 LEU 83 83 83 LEU LEU B . n B 2 84 LYS 84 84 84 LYS LYS B . n B 2 85 THR 85 85 85 THR THR B . n B 2 86 LEU 86 86 86 LEU LEU B . n B 2 87 ASN 87 87 87 ASN ASN B . n B 2 88 ASP 88 88 88 ASP ASP B . n B 2 89 GLU 89 89 89 GLU GLU B . n B 2 90 ASN 90 90 90 ASN ASN B . n B 2 91 ASN 91 91 91 ASN ASN B . n C 2 1 MET 1 1 ? ? ? C . n C 2 2 ASN 2 2 ? ? ? C . n C 2 3 LYS 3 3 ? ? ? C . n C 2 4 ASP 4 4 ? ? ? C . n C 2 5 ILE 5 5 ? ? ? C . n C 2 6 ALA 6 6 ? ? ? C . n C 2 7 SER 7 7 ? ? ? C . n C 2 8 ALA 8 8 ? ? ? C . n C 2 9 SER 9 9 ? ? ? C . n C 2 10 ASN 10 10 ? ? ? C . n C 2 11 ASN 11 11 11 ASN ASN C . n C 2 12 ASN 12 12 12 ASN ASN C . n C 2 13 GLN 13 13 13 GLN GLN C . n C 2 14 ASN 14 14 14 ASN ASN C . n C 2 15 ILE 15 15 15 ILE ILE C . n C 2 16 THR 16 16 16 THR THR C . n C 2 17 ASN 17 17 17 ASN ASN C . n C 2 18 TYI 18 18 18 TYI TYI C . n C 2 19 SER 19 19 19 SER SER C . n C 2 20 ILE 20 20 20 ILE ILE C . n C 2 21 GLU 21 21 21 GLU GLU C . n C 2 22 GLU 22 22 22 GLU GLU C . n C 2 23 ASN 23 23 23 ASN ASN C . n C 2 24 ILE 24 24 24 ILE ILE C . n C 2 25 ILE 25 25 25 ILE ILE C . n C 2 26 ASN 26 26 26 ASN ASN C . n C 2 27 LEU 27 27 27 LEU LEU C . n C 2 28 LYS 28 28 28 LYS LYS C . n C 2 29 TYI 29 29 29 TYI TYI C . n C 2 30 LYS 30 30 30 LYS LYS C . n C 2 31 ILE 31 31 31 ILE ILE C . n C 2 32 ARG 32 32 32 ARG ARG C . n C 2 33 LYS 33 33 33 LYS LYS C . n C 2 34 ASN 34 34 34 ASN ASN C . n C 2 35 ALA 35 35 35 ALA ALA C . n C 2 36 VAL 36 36 36 VAL VAL C . n C 2 37 LYS 37 37 37 LYS LYS C . n C 2 38 LYS 38 38 38 LYS LYS C . n C 2 39 ILE 39 39 39 ILE ILE C . n C 2 40 ASN 40 40 40 ASN ASN C . n C 2 41 THR 41 41 41 THR THR C . n C 2 42 GLU 42 42 42 GLU GLU C . n C 2 43 ARG 43 43 43 ARG ARG C . n C 2 44 GLU 44 44 44 GLU GLU C . n C 2 45 ILE 45 45 45 ILE ILE C . n C 2 46 GLN 46 46 46 GLN GLN C . n C 2 47 GLN 47 47 47 GLN GLN C . n C 2 48 LEU 48 48 48 LEU LEU C . n C 2 49 SER 49 49 49 SER SER C . n C 2 50 ASN 50 50 50 ASN ASN C . n C 2 51 ASN 51 51 51 ASN ASN C . n C 2 52 ASP 52 52 52 ASP ASP C . n C 2 53 PRO 53 53 53 PRO PRO C . n C 2 54 ASN 54 54 54 ASN ASN C . n C 2 55 LYS 55 55 55 LYS LYS C . n C 2 56 ASN 56 56 56 ASN ASN C . n C 2 57 THR 57 57 57 THR THR C . n C 2 58 LEU 58 58 58 LEU LEU C . n C 2 59 LEU 59 59 59 LEU LEU C . n C 2 60 ALA 60 60 60 ALA ALA C . n C 2 61 LEU 61 61 61 LEU LEU C . n C 2 62 LYS 62 62 62 LYS LYS C . n C 2 63 GLN 63 63 63 GLN GLN C . n C 2 64 ASN 64 64 64 ASN ASN C . n C 2 65 LEU 65 65 65 LEU LEU C . n C 2 66 GLU 66 66 66 GLU GLU C . n C 2 67 ASN 67 67 67 ASN ASN C . n C 2 68 LEU 68 68 68 LEU LEU C . n C 2 69 ILE 69 69 69 ILE ILE C . n C 2 70 HIS 70 70 70 HIS HIS C . n C 2 71 ASN 71 71 71 ASN ASN C . n C 2 72 GLN 72 72 72 GLN GLN C . n C 2 73 LYS 73 73 73 LYS LYS C . n C 2 74 GLU 74 74 74 GLU GLU C . n C 2 75 GLN 75 75 75 GLN GLN C . n C 2 76 LEU 76 76 76 LEU LEU C . n C 2 77 LYS 77 77 77 LYS LYS C . n C 2 78 THR 78 78 78 THR THR C . n C 2 79 TYI 79 79 79 TYI TYI C . n C 2 80 GLN 80 80 80 GLN GLN C . n C 2 81 LYS 81 81 81 LYS LYS C . n C 2 82 LEU 82 82 82 LEU LEU C . n C 2 83 LEU 83 83 83 LEU LEU C . n C 2 84 LYS 84 84 84 LYS LYS C . n C 2 85 THR 85 85 85 THR THR C . n C 2 86 LEU 86 86 86 LEU LEU C . n C 2 87 ASN 87 87 87 ASN ASN C . n C 2 88 ASP 88 88 88 ASP ASP C . n C 2 89 GLU 89 89 89 GLU GLU C . n C 2 90 ASN 90 90 90 ASN ASN C . n C 2 91 ASN 91 91 91 ASN ASN C . n D 3 1 MET 1 1 ? ? ? D . n D 3 2 ASN 2 2 ? ? ? D . n D 3 3 LYS 3 3 ? ? ? D . n D 3 4 ASP 4 4 ? ? ? D . n D 3 5 ILE 5 5 ? ? ? D . n D 3 6 ALA 6 6 ? ? ? D . n D 3 7 SER 7 7 ? ? ? D . n D 3 8 ALA 8 8 ? ? ? D . n D 3 9 SER 9 9 ? ? ? D . n D 3 10 ASN 10 10 ? ? ? D . n D 3 11 ASN 11 11 11 ASN ASN D . n D 3 12 ASN 12 12 12 ASN ASN D . n D 3 13 GLN 13 13 13 GLN GLN D . n D 3 14 ASN 14 14 14 ASN ASN D . n D 3 15 ILE 15 15 15 ILE ILE D . n D 3 16 THR 16 16 16 THR THR D . n D 3 17 ASN 17 17 17 ASN ASN D . n D 3 18 TYR 18 18 18 TYR TYR D . n D 3 19 SER 19 19 19 SER SER D . n D 3 20 ILE 20 20 20 ILE ILE D . n D 3 21 GLU 21 21 21 GLU GLU D . n D 3 22 GLU 22 22 22 GLU GLU D . n D 3 23 ASN 23 23 23 ASN ASN D . n D 3 24 ILE 24 24 24 ILE ILE D . n D 3 25 ILE 25 25 25 ILE ILE D . n D 3 26 ASN 26 26 26 ASN ASN D . n D 3 27 LEU 27 27 27 LEU LEU D . n D 3 28 LYS 28 28 28 LYS LYS D . n D 3 29 IYR 29 29 29 IYR IYR D . n D 3 30 LYS 30 30 30 LYS LYS D . n D 3 31 ILE 31 31 31 ILE ILE D . n D 3 32 ARG 32 32 32 ARG ARG D . n D 3 33 LYS 33 33 33 LYS LYS D . n D 3 34 ASN 34 34 34 ASN ASN D . n D 3 35 ALA 35 35 35 ALA ALA D . n D 3 36 VAL 36 36 36 VAL VAL D . n D 3 37 LYS 37 37 37 LYS LYS D . n D 3 38 LYS 38 38 38 LYS LYS D . n D 3 39 ILE 39 39 39 ILE ILE D . n D 3 40 ASN 40 40 40 ASN ASN D . n D 3 41 THR 41 41 41 THR THR D . n D 3 42 GLU 42 42 42 GLU GLU D . n D 3 43 ARG 43 43 43 ARG ARG D . n D 3 44 GLU 44 44 44 GLU GLU D . n D 3 45 ILE 45 45 45 ILE ILE D . n D 3 46 GLN 46 46 46 GLN GLN D . n D 3 47 GLN 47 47 47 GLN GLN D . n D 3 48 LEU 48 48 48 LEU LEU D . n D 3 49 SER 49 49 49 SER SER D . n D 3 50 ASN 50 50 50 ASN ASN D . n D 3 51 ASN 51 51 51 ASN ASN D . n D 3 52 ASP 52 52 52 ASP ASP D . n D 3 53 PRO 53 53 53 PRO PRO D . n D 3 54 ASN 54 54 54 ASN ASN D . n D 3 55 LYS 55 55 55 LYS LYS D . n D 3 56 ASN 56 56 56 ASN ASN D . n D 3 57 THR 57 57 57 THR THR D . n D 3 58 LEU 58 58 58 LEU LEU D . n D 3 59 LEU 59 59 59 LEU LEU D . n D 3 60 ALA 60 60 60 ALA ALA D . n D 3 61 LEU 61 61 61 LEU LEU D . n D 3 62 LYS 62 62 62 LYS LYS D . n D 3 63 GLN 63 63 63 GLN GLN D . n D 3 64 ASN 64 64 64 ASN ASN D . n D 3 65 LEU 65 65 65 LEU LEU D . n D 3 66 GLU 66 66 66 GLU GLU D . n D 3 67 ASN 67 67 67 ASN ASN D . n D 3 68 LEU 68 68 68 LEU LEU D . n D 3 69 ILE 69 69 69 ILE ILE D . n D 3 70 HIS 70 70 70 HIS HIS D . n D 3 71 ASN 71 71 71 ASN ASN D . n D 3 72 GLN 72 72 72 GLN GLN D . n D 3 73 LYS 73 73 73 LYS LYS D . n D 3 74 GLU 74 74 74 GLU GLU D . n D 3 75 GLN 75 75 75 GLN GLN D . n D 3 76 LEU 76 76 76 LEU LEU D . n D 3 77 LYS 77 77 77 LYS LYS D . n D 3 78 THR 78 78 78 THR THR D . n D 3 79 TYI 79 79 79 TYI TYI D . n D 3 80 GLN 80 80 80 GLN GLN D . n D 3 81 LYS 81 81 81 LYS LYS D . n D 3 82 LEU 82 82 82 LEU LEU D . n D 3 83 LEU 83 83 83 LEU LEU D . n D 3 84 LYS 84 84 84 LYS LYS D . n D 3 85 THR 85 85 85 THR THR D . n D 3 86 LEU 86 86 86 LEU LEU D . n D 3 87 ASN 87 87 87 ASN ASN D . n D 3 88 ASP 88 88 88 ASP ASP D . n D 3 89 GLU 89 89 89 GLU GLU D . n D 3 90 ASN 90 90 90 ASN ASN D . n D 3 91 ASN 91 91 91 ASN ASN D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 IOD 1 101 14 IOD IOD A . F 4 IOD 1 102 25 IOD IOD A . G 4 IOD 1 103 29 IOD IOD A . H 4 IOD 1 101 12 IOD IOD B . I 4 IOD 1 102 24 IOD IOD B . J 4 IOD 1 103 27 IOD IOD B . K 4 IOD 1 104 28 IOD IOD B . L 4 IOD 1 105 41 IOD IOD B . M 4 IOD 1 106 42 IOD IOD B . N 4 IOD 1 107 69 IOD IOD B . O 4 IOD 1 108 70 IOD IOD B . P 4 IOD 1 101 31 IOD IOD C . Q 4 IOD 1 102 32 IOD IOD C . R 4 IOD 1 101 18 IOD IOD D . S 4 IOD 1 102 40 IOD IOD D . T 4 IOD 1 103 67 IOD IOD D . U 4 IOD 1 104 68 IOD IOD D . V 4 IOD 1 105 71 IOD IOD D . W 4 IOD 1 106 72 IOD IOD D . X 5 HOH 1 201 8 HOH HOH A . X 5 HOH 2 202 3 HOH HOH A . X 5 HOH 3 203 11 HOH HOH A . X 5 HOH 4 204 4 HOH HOH A . Y 5 HOH 1 201 14 HOH HOH B . Y 5 HOH 2 202 16 HOH HOH B . Y 5 HOH 3 203 15 HOH HOH B . Z 5 HOH 1 201 1 HOH HOH C . Z 5 HOH 2 202 2 HOH HOH C . Z 5 HOH 3 203 7 HOH HOH C . AA 5 HOH 1 201 6 HOH HOH D . AA 5 HOH 2 202 9 HOH HOH D . AA 5 HOH 3 203 12 HOH HOH D . AA 5 HOH 4 204 13 HOH HOH D . AA 5 HOH 5 205 10 HOH HOH D . AA 5 HOH 6 206 5 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A IYR 18 A IYR 18 ? TYR 'modified residue' 2 A IYR 29 A IYR 29 ? TYR 'modified residue' 3 A TYI 79 A TYI 79 ? TYR 'modified residue' 4 B TYI 18 B TYI 18 ? TYR 'modified residue' 5 B TYI 29 B TYI 29 ? TYR 'modified residue' 6 B TYI 79 B TYI 79 ? TYR 'modified residue' 7 C TYI 18 C TYI 18 ? TYR 'modified residue' 8 C TYI 29 C TYI 29 ? TYR 'modified residue' 9 C TYI 79 C TYI 79 ? TYR 'modified residue' 10 D IYR 29 D IYR 29 ? TYR 'modified residue' 11 D TYI 79 D TYI 79 ? TYR 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11190 ? 1 MORE -30 ? 1 'SSA (A^2)' 19200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-05-15 2 'Structure model' 1 1 2019-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -3.9586 16.1507 -23.2195 0.1962 ? 0.0513 ? 0.0373 ? 0.4383 ? 0.0113 ? 0.2779 ? 3.9452 ? 3.3693 ? -0.1845 ? 8.5293 ? 5.8969 ? 7.2925 ? -0.2735 ? -0.1699 ? 0.1744 ? -0.0566 ? 1.0357 ? -0.4399 ? -0.0514 ? 0.7276 ? -0.5725 ? 2 'X-RAY DIFFRACTION' ? refined -9.6531 4.5366 -20.7389 0.3400 ? -0.1011 ? -0.0486 ? 0.4096 ? 0.0014 ? 0.3575 ? 4.5440 ? -2.9730 ? -1.2787 ? 3.5864 ? -0.4489 ? 4.5548 ? -0.1884 ? -0.0235 ? -0.7770 ? 0.2081 ? 0.1722 ? 1.1689 ? 0.5776 ? -0.3785 ? 0.1423 ? 3 'X-RAY DIFFRACTION' ? refined -17.1752 33.6867 -19.8949 1.5502 ? 0.0251 ? -0.3796 ? 0.9055 ? -0.0689 ? 1.0532 ? 4.2164 ? -4.3020 ? -1.9554 ? 1.9853 ? 1.9996 ? 2.0092 ? 0.1491 ? -0.9018 ? -0.0478 ? -3.0444 ? -3.1793 ? 1.6106 ? -1.6452 ? -2.8405 ? 1.5526 ? 4 'X-RAY DIFFRACTION' ? refined 4.5054 12.5050 -24.4917 0.2516 ? 0.0004 ? -0.0109 ? 0.3088 ? -0.0525 ? 0.4614 ? 3.9827 ? 0.9699 ? 0.8007 ? 2.8726 ? 1.0360 ? 7.6970 ? 0.3015 ? 0.0025 ? -0.4886 ? 0.0382 ? -0.0482 ? 0.0440 ? 0.1928 ? -0.0902 ? -0.2559 ? 5 'X-RAY DIFFRACTION' ? refined 9.7736 28.3680 -18.9126 0.9743 ? -0.3033 ? -0.0924 ? 0.4870 ? 0.0067 ? 0.5601 ? 4.8184 ? -1.5628 ? -0.1802 ? 4.3195 ? 3.6149 ? 4.1737 ? -0.3482 ? 0.0033 ? 0.6733 ? 0.4177 ? -0.1064 ? -0.3261 ? -1.4161 ? 0.7028 ? 0.4368 ? 6 'X-RAY DIFFRACTION' ? refined 15.9737 0.5139 -24.3047 0.6809 ? 0.0330 ? -0.1572 ? 0.5731 ? 0.0335 ? 1.0489 ? 4.3139 ? 1.1470 ? -3.9599 ? 7.1899 ? -4.8604 ? 5.7453 ? 0.2634 ? -0.2844 ? -0.8294 ? 0.0828 ? 0.3974 ? -0.3687 ? 0.1439 ? -0.8655 ? 0.5715 ? 7 'X-RAY DIFFRACTION' ? refined 13.6337 -5.5307 -11.5190 0.8158 ? 0.0198 ? -0.4483 ? 1.9324 ? -0.6763 ? 1.6411 ? 0.3669 ? 1.0526 ? -1.5339 ? 3.1965 ? -4.4267 ? 6.1300 ? 1.1549 ? 2.2815 ? -0.9330 ? 0.5848 ? 0.2382 ? -0.4516 ? -0.5642 ? 3.6851 ? -0.1025 ? 8 'X-RAY DIFFRACTION' ? refined -8.5945 16.5985 -6.3003 0.2891 ? -0.0180 ? 0.0125 ? 0.4631 ? -0.1243 ? 0.5112 ? 5.4165 ? -3.9074 ? -1.3921 ? 6.4736 ? 2.3379 ? 3.6631 ? 0.1701 ? -0.4799 ? -0.4181 ? -0.1794 ? -0.0632 ? 1.0453 ? -0.3057 ? -0.0608 ? -0.2226 ? 9 'X-RAY DIFFRACTION' ? refined -13.9102 11.8607 -11.0001 0.3193 ? -0.1157 ? 0.0479 ? 0.7110 ? -0.1402 ? 0.5326 ? 7.3877 ? -4.4081 ? 0.5744 ? 7.0951 ? -2.4475 ? 1.5696 ? 0.2567 ? -0.0651 ? -1.4777 ? -0.5578 ? -0.1808 ? 1.9291 ? 0.3740 ? -0.6393 ? -0.0409 ? 10 'X-RAY DIFFRACTION' ? refined 0.4693 -8.9169 -9.2876 1.0644 ? 0.3642 ? 0.2317 ? 0.9127 ? 0.2436 ? 1.6178 ? 2.5270 ? -2.1167 ? 4.1028 ? 1.9318 ? -3.2471 ? 6.7078 ? 0.9183 ? -0.4861 ? -2.1633 ? -1.8126 ? -1.8787 ? -0.3721 ? 3.0195 ? 2.2131 ? -0.7421 ? 11 'X-RAY DIFFRACTION' ? refined 1.0766 19.1388 -6.3547 0.2390 ? -0.1352 ? 0.0633 ? 0.4392 ? -0.0805 ? 0.4199 ? 9.8375 ? -5.3042 ? 3.4298 ? 4.4586 ? -2.2160 ? 6.4042 ? -0.0063 ? -0.4989 ? 0.6414 ? -0.1129 ? 0.4588 ? -0.4310 ? -0.0975 ? -0.2848 ? -0.4437 ? 12 'X-RAY DIFFRACTION' ? refined 11.6380 17.9636 -8.5638 0.2417 ? -0.1084 ? -0.1551 ? 0.5199 ? -0.0552 ? 0.5376 ? 6.1563 ? -3.1995 ? -2.4219 ? 7.8234 ? 1.1305 ? 6.0471 ? 0.3311 ? 0.3574 ? -0.0294 ? 0.1872 ? -0.3277 ? -1.1459 ? 0.0034 ? 0.4283 ? -0.1839 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 11 through 47 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 48 through 81 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 82 through 91 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 11 through 47 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 48 through 77 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 78 through 90 ) ; 7 'X-RAY DIFFRACTION' 7 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 11 through 19 ) ; 8 'X-RAY DIFFRACTION' 8 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 20 through 54 ) ; 9 'X-RAY DIFFRACTION' 9 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 55 through 77 ) ; 10 'X-RAY DIFFRACTION' 10 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 78 through 90 ) ; 11 'X-RAY DIFFRACTION' 11 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 11 through 44 ) ; 12 'X-RAY DIFFRACTION' 12 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 45 through 90 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14_3260)' 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HD11 B LEU 48 ? ? HB2 B LYS 55 ? ? 1.16 2 1 HD11 B ILE 24 ? ? HB2 B TYI 79 ? ? 1.32 3 1 H B TYI 79 ? ? H B GLN 80 ? ? 1.33 4 1 HE21 C GLN 47 ? ? O C HOH 201 ? ? 1.42 5 1 HD13 B LEU 48 ? ? O B SER 49 ? ? 1.42 6 1 O A GLN 80 ? ? H A LYS 84 ? ? 1.46 7 1 HE22 A GLN 13 ? ? OD1 D ASN 12 ? ? 1.49 8 1 O A ASN 11 ? ? H A GLN 13 ? ? 1.56 9 1 OG1 C THR 16 ? ? H C ASN 17 ? ? 1.56 10 1 HD22 A ASN 40 ? ? OE2 B GLU 22 ? ? 1.57 11 1 OE2 A GLU 22 ? ? HD22 B ASN 40 ? ? 1.58 12 1 OD1 B ASN 54 ? ? O B HOH 201 ? ? 1.85 13 1 OG B SER 19 ? ? OG C SER 19 ? ? 1.89 14 1 O A ASN 91 ? ? ND2 D ASN 12 ? ? 1.91 15 1 NE2 C GLN 47 ? ? O C HOH 201 ? ? 1.96 16 1 O C LEU 82 ? ? OG1 C THR 85 ? ? 1.96 17 1 O D LYS 37 ? ? OG1 D THR 41 ? ? 2.06 18 1 NE2 A GLN 13 ? ? OD1 D ASN 12 ? ? 2.06 19 1 O D HOH 203 ? ? O D HOH 205 ? ? 2.14 20 1 OE1 D GLU 66 ? ? O D HOH 201 ? ? 2.15 21 1 O B ASN 10 ? ? ND2 B ASN 14 ? ? 2.15 22 1 OG B SER 49 ? ? OD2 B ASP 52 ? ? 2.17 23 1 NZ A LYS 38 ? ? OE2 A GLU 66 ? ? 2.18 24 1 NZ D LYS 38 ? ? OE2 D GLU 42 ? ? 2.18 25 1 O A HOH 202 ? ? O A HOH 204 ? ? 2.18 26 1 O A GLN 80 ? ? N A LYS 84 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 HH21 A ARG 43 ? ? 1_555 O B VAL 36 ? ? 3_544 0.89 2 1 OE1 C GLU 89 ? ? 1_555 HG1 D THR 85 ? ? 1_545 1.18 3 1 OE2 C GLU 89 ? ? 1_555 HA D THR 85 ? ? 1_545 1.30 4 1 HH22 A ARG 43 ? ? 1_555 HB2 B ASN 40 ? ? 3_544 1.34 5 1 OE1 C GLU 89 ? ? 1_555 OG1 D THR 85 ? ? 1_545 1.41 6 1 HE22 B GLN 13 ? ? 1_555 OD1 B ASN 50 ? ? 1_545 1.43 7 1 HD21 A ASN 11 ? ? 1_555 O A ASN 51 ? ? 1_565 1.45 8 1 OE1 B GLN 13 ? ? 1_555 HA B SER 49 ? ? 1_545 1.50 9 1 OG1 A THR 85 ? ? 1_555 HD21 B ASN 91 ? ? 3_554 1.51 10 1 OE1 C GLN 63 ? ? 1_555 HE21 D GLN 63 ? ? 1_455 1.55 11 1 NH2 A ARG 43 ? ? 1_555 O B VAL 36 ? ? 3_544 1.63 12 1 NE2 B GLN 13 ? ? 1_555 OD1 B ASN 50 ? ? 1_545 2.01 13 1 OG1 A THR 85 ? ? 1_555 ND2 B ASN 91 ? ? 3_554 2.03 14 1 ND2 A ASN 14 ? ? 1_555 OD1 A ASN 51 ? ? 1_565 2.04 15 1 ND2 A ASN 11 ? ? 1_555 O A ASN 51 ? ? 1_565 2.08 16 1 OE2 C GLU 89 ? ? 1_555 CA D THR 85 ? ? 1_545 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A ARG 43 ? ? CD A ARG 43 ? ? 1.666 1.515 0.151 0.025 N 2 1 CZ A ARG 43 ? ? NH2 A ARG 43 ? ? 1.246 1.326 -0.080 0.013 N 3 1 CG B GLN 13 ? ? CD B GLN 13 ? ? 1.341 1.506 -0.165 0.023 N 4 1 CD B GLN 13 ? ? OE1 B GLN 13 ? ? 1.007 1.235 -0.228 0.022 N 5 1 CD B GLN 13 ? ? NE2 B GLN 13 ? ? 1.168 1.324 -0.156 0.025 N 6 1 CG C GLN 63 ? ? CD C GLN 63 ? ? 1.321 1.506 -0.185 0.023 N 7 1 CG C GLU 89 ? ? CD C GLU 89 ? ? 1.408 1.515 -0.107 0.015 N 8 1 CG D GLN 47 ? ? CD D GLN 47 ? ? 1.364 1.506 -0.142 0.023 N 9 1 CD D GLN 47 ? ? NE2 D GLN 47 ? ? 1.116 1.324 -0.208 0.025 N 10 1 CB D GLN 63 ? ? CG D GLN 63 ? ? 1.734 1.521 0.213 0.027 N 11 1 CG D GLN 63 ? ? CD D GLN 63 ? ? 1.697 1.506 0.191 0.023 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD A ARG 43 ? ? NE A ARG 43 ? ? CZ A ARG 43 ? ? 132.08 123.60 8.48 1.40 N 2 1 NH1 A ARG 43 ? ? CZ A ARG 43 ? ? NH2 A ARG 43 ? ? 108.15 119.40 -11.25 1.10 N 3 1 NE A ARG 43 ? ? CZ A ARG 43 ? ? NH1 A ARG 43 ? ? 134.15 120.30 13.85 0.50 N 4 1 CD A LYS 84 ? ? CE A LYS 84 ? ? NZ A LYS 84 ? ? 130.25 111.70 18.55 2.30 N 5 1 CG D GLN 47 ? ? CD D GLN 47 ? ? OE1 D GLN 47 ? ? 135.79 121.60 14.19 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 8 ? ? -9.47 -51.21 2 1 SER A 9 ? ? 64.44 76.36 3 1 ASN A 11 ? ? -128.67 -94.24 4 1 ASN A 12 ? ? 63.76 -53.42 5 1 GLN A 47 ? ? -88.48 32.39 6 1 ASP A 52 ? ? -30.64 126.35 7 1 GLN A 80 ? ? -53.48 -74.71 8 1 LYS A 84 ? ? -16.07 -108.62 9 1 LEU A 86 ? ? -77.09 29.73 10 1 ASN A 87 ? ? -76.85 34.94 11 1 GLU A 89 ? ? 39.06 87.37 12 1 ASN A 90 ? ? -97.50 -82.33 13 1 ILE B 5 ? ? -160.92 41.35 14 1 SER B 19 ? ? 67.49 -64.43 15 1 ASN B 51 ? ? -140.59 13.01 16 1 LEU B 59 ? ? -65.59 1.38 17 1 LYS B 62 ? ? -41.64 -73.32 18 1 GLN B 63 ? ? -11.79 -67.42 19 1 LEU B 86 ? ? -81.84 -111.47 20 1 ASP B 88 ? ? 77.33 34.85 21 1 GLU B 89 ? ? -52.81 82.78 22 1 ASN B 90 ? ? 23.88 57.58 23 1 ASN C 14 ? ? -75.30 -91.44 24 1 THR C 16 ? ? 74.26 -87.26 25 1 ASN C 51 ? ? -63.01 -155.63 26 1 ASP C 52 ? ? -103.90 -161.95 27 1 PRO C 53 ? ? -80.20 47.02 28 1 ASP C 88 ? ? -69.05 -130.47 29 1 ASN C 90 ? ? 61.28 97.29 30 1 GLN D 46 ? ? -89.66 48.99 31 1 GLN D 47 ? ? -36.73 -87.07 32 1 SER D 49 ? ? 11.45 -77.02 33 1 ASN D 50 ? ? -2.20 74.71 34 1 ASN D 51 ? ? -60.98 89.60 35 1 THR D 78 ? ? -60.26 -71.92 36 1 TYI D 79 ? ? -30.55 -37.89 37 1 LEU D 86 ? ? -163.58 -55.30 38 1 ASP D 88 ? ? 66.66 163.38 39 1 GLU D 89 ? ? 66.62 -83.56 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LEU _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 48 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 49 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 139.16 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ASN A 17 ? ? -10.39 2 1 TYI C 29 ? ? -17.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ASN 2 ? A ASN 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A ASP 4 ? A ASP 4 5 1 Y 1 A ILE 5 ? A ILE 5 6 1 Y 1 A ALA 6 ? A ALA 6 7 1 Y 1 B MET 1 ? B MET 1 8 1 Y 1 B ASN 2 ? B ASN 2 9 1 Y 1 B LYS 3 ? B LYS 3 10 1 Y 1 C MET 1 ? C MET 1 11 1 Y 1 C ASN 2 ? C ASN 2 12 1 Y 1 C LYS 3 ? C LYS 3 13 1 Y 1 C ASP 4 ? C ASP 4 14 1 Y 1 C ILE 5 ? C ILE 5 15 1 Y 1 C ALA 6 ? C ALA 6 16 1 Y 1 C SER 7 ? C SER 7 17 1 Y 1 C ALA 8 ? C ALA 8 18 1 Y 1 C SER 9 ? C SER 9 19 1 Y 1 C ASN 10 ? C ASN 10 20 1 Y 1 D MET 1 ? D MET 1 21 1 Y 1 D ASN 2 ? D ASN 2 22 1 Y 1 D LYS 3 ? D LYS 3 23 1 Y 1 D ASP 4 ? D ASP 4 24 1 Y 1 D ILE 5 ? D ILE 5 25 1 Y 1 D ALA 6 ? D ALA 6 26 1 Y 1 D SER 7 ? D SER 7 27 1 Y 1 D ALA 8 ? D ALA 8 28 1 Y 1 D SER 9 ? D SER 9 29 1 Y 1 D ASN 10 ? D ASN 10 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science' Japan 25221201 1 'Japan Society for the Promotion of Science' Japan GS005 2 'Japan Society for the Promotion of Science' Japan 16K14643 3 'Japan Society for the Promotion of Science' Japan 17J09944 4 'Japan Society for the Promotion of Science' Japan 17H06618 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'IODIDE ION' IOD 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #