data_6JQY # _entry.id 6JQY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JQY pdb_00006jqy 10.2210/pdb6jqy/pdb WWPDB D_1300011590 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JQY _pdbx_database_status.recvd_initial_deposition_date 2019-04-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Roy, M.' 1 ? 'Singh, B.K.' 2 ? 'Bhattacharyya, S.' 3 ? 'Das, A.K.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of N-terminal domain of VapB46 antitoxin from Mycobacterium tuberculosis' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Roy, M.' 1 ? primary 'Singh, B.K.' 2 ? primary 'Bhattacharyya, S.' 3 ? primary 'Das, A.k.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 116.13 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6JQY _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.043 _cell.length_a_esd ? _cell.length_b 50.548 _cell.length_b_esd ? _cell.length_c 42.623 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Antitoxin VapB46' 4822.547 4 ? R23Q ? ? 2 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 3 water nat water 18.015 103 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code TMTSVGVRALRQQASELLRRVEAGETIEITDRGRPVALLSPLPQ _entity_poly.pdbx_seq_one_letter_code_can TMTSVGVRALRQQASELLRRVEAGETIEITDRGRPVALLSPLPQ _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 MET n 1 3 THR n 1 4 SER n 1 5 VAL n 1 6 GLY n 1 7 VAL n 1 8 ARG n 1 9 ALA n 1 10 LEU n 1 11 ARG n 1 12 GLN n 1 13 GLN n 1 14 ALA n 1 15 SER n 1 16 GLU n 1 17 LEU n 1 18 LEU n 1 19 ARG n 1 20 ARG n 1 21 VAL n 1 22 GLU n 1 23 ALA n 1 24 GLY n 1 25 GLU n 1 26 THR n 1 27 ILE n 1 28 GLU n 1 29 ILE n 1 30 THR n 1 31 ASP n 1 32 ARG n 1 33 GLY n 1 34 ARG n 1 35 PRO n 1 36 VAL n 1 37 ALA n 1 38 LEU n 1 39 LEU n 1 40 SER n 1 41 PRO n 1 42 LEU n 1 43 PRO n 1 44 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 44 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'vapB46, MT3493' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'CDC 1551 / Oshkosh' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83331 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'M15(pREP4)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VPB46_MYCTO _struct_ref.pdbx_db_accession P9WF12 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TMTSVGVRALRQRASELLRRVEAGETIEITDRGRPVALLSPLPQ _struct_ref.pdbx_align_begin 11 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6JQY A 1 ? 44 ? P9WF12 11 ? 54 ? 11 54 2 1 6JQY B 1 ? 44 ? P9WF12 11 ? 54 ? 11 54 3 1 6JQY C 1 ? 44 ? P9WF12 11 ? 54 ? 11 54 4 1 6JQY D 1 ? 44 ? P9WF12 11 ? 54 ? 11 54 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6JQY GLN A 13 ? UNP P9WF12 ARG 23 'engineered mutation' 23 1 2 6JQY GLN B 13 ? UNP P9WF12 ARG 23 'engineered mutation' 23 2 3 6JQY GLN C 13 ? UNP P9WF12 ARG 23 'engineered mutation' 23 3 4 6JQY GLN D 13 ? UNP P9WF12 ARG 23 'engineered mutation' 23 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JQY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.5 _exptl_crystal.description 'Dagger shaped' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1M Sodium acetate trihydrate pH 4.6, 2M NaCl, 0.1M NaBr' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.diffrn_id 1 _diffrn_detector.type MARRESEARCH _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-09-28 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97949 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'RRCAT INDUS-2 BEAMLINE PX-BL21' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97949 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline PX-BL21 _diffrn_source.pdbx_synchrotron_site 'RRCAT INDUS-2' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6JQY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.643 _reflns.d_resolution_low 38.267 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17661 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.200 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.100 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.045 _reflns.pdbx_netI_over_av_sigmaI 13.600 _reflns.pdbx_netI_over_sigmaI 18.100 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.052 _reflns.pdbx_Rpim_I_all 0.025 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.64 _reflns_shell.d_res_low 1.73 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 9093 _reflns_shell.percent_possible_all 95.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.608 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.353 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.849 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JQY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.643 _refine.ls_d_res_low 21.253 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17617 _refine.ls_number_reflns_R_free 901 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.02 _refine.ls_percent_reflns_R_free 5.11 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1970 _refine.ls_R_factor_R_free 0.2321 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1952 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4ZLX _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.39 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.18 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1285 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 103 _refine_hist.number_atoms_total 1396 _refine_hist.d_res_high 1.643 _refine_hist.d_res_low 21.253 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 1305 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.225 ? 1770 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 10.754 ? 906 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.065 ? 225 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 233 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6427 1.7456 . . 152 2644 95.00 . . . 0.2973 . 0.2739 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7456 1.8803 . . 142 2792 100.00 . . . 0.3257 . 0.2319 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8803 2.0694 . . 156 2812 100.00 . . . 0.2362 . 0.1891 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0694 2.3685 . . 171 2796 100.00 . . . 0.2216 . 0.1862 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3685 2.9827 . . 121 2829 100.00 . . . 0.2243 . 0.2070 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9827 21.2547 . . 159 2843 99.00 . . . 0.2185 . 0.1797 . . . . . . . . . . # _struct.entry_id 6JQY _struct.title 'Crystal structure of N-terminal domain of VapB46 antitoxin from Mycobacterium tuberculosis' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JQY _struct_keywords.text 'Phd/YefM fold, DNA binding, Virulence associated protein, antitoxin, DNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 7 ? GLN A 13 ? VAL A 17 GLN A 23 1 ? 7 HELX_P HELX_P2 AA2 GLN A 13 ? ALA A 23 ? GLN A 23 ALA A 33 1 ? 11 HELX_P HELX_P3 AA3 VAL B 7 ? ALA B 23 ? VAL B 17 ALA B 33 1 ? 17 HELX_P HELX_P4 AA4 VAL C 7 ? ALA C 23 ? VAL C 17 ALA C 33 1 ? 17 HELX_P HELX_P5 AA5 VAL D 7 ? GLN D 13 ? VAL D 17 GLN D 23 1 ? 7 HELX_P HELX_P6 AA6 GLN D 13 ? ALA D 23 ? GLN D 23 ALA D 33 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? parallel AA2 1 2 ? parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 3 ? GLY A 6 ? THR A 13 GLY A 16 AA1 2 ILE A 27 ? ASP A 31 ? ILE A 37 ASP A 41 AA1 3 ARG A 34 ? PRO A 41 ? ARG A 44 PRO A 51 AA1 4 ARG B 34 ? PRO B 41 ? ARG B 44 PRO B 51 AA1 5 ILE B 27 ? ASP B 31 ? ILE B 37 ASP B 41 AA1 6 SER B 4 ? GLY B 6 ? SER B 14 GLY B 16 AA2 1 SER C 4 ? GLY C 6 ? SER C 14 GLY C 16 AA2 2 ILE C 27 ? ASP C 31 ? ILE C 37 ASP C 41 AA2 3 ARG C 34 ? PRO C 41 ? ARG C 44 PRO C 51 AA2 4 ARG D 34 ? PRO D 41 ? ARG D 44 PRO D 51 AA2 5 ILE D 27 ? ASP D 31 ? ILE D 37 ASP D 41 AA2 6 SER D 4 ? GLY D 6 ? SER D 14 GLY D 16 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 3 ? N THR A 13 O GLU A 28 ? O GLU A 38 AA1 2 3 N ILE A 27 ? N ILE A 37 O LEU A 39 ? O LEU A 49 AA1 3 4 N LEU A 38 ? N LEU A 48 O SER B 40 ? O SER B 50 AA1 4 5 O VAL B 36 ? O VAL B 46 N ILE B 29 ? N ILE B 39 AA1 5 6 O GLU B 28 ? O GLU B 38 N VAL B 5 ? N VAL B 15 AA2 1 2 N VAL C 5 ? N VAL C 15 O GLU C 28 ? O GLU C 38 AA2 2 3 N ILE C 29 ? N ILE C 39 O VAL C 36 ? O VAL C 46 AA2 3 4 N SER C 40 ? N SER C 50 O LEU D 38 ? O LEU D 48 AA2 4 5 O LEU D 39 ? O LEU D 49 N ILE D 27 ? N ILE D 37 AA2 5 6 O GLU D 28 ? O GLU D 38 N VAL D 5 ? N VAL D 15 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 101 ? 4 'binding site for residue ACT A 101' AC2 Software D ACT 101 ? 3 'binding site for residue ACT D 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 8 ? ARG A 18 . ? 1_555 ? 2 AC1 4 ALA A 9 ? ALA A 19 . ? 1_555 ? 3 AC1 4 GLN A 12 ? GLN A 22 . ? 1_555 ? 4 AC1 4 HOH G . ? HOH A 202 . ? 1_555 ? 5 AC2 3 ARG D 8 ? ARG D 18 . ? 1_555 ? 6 AC2 3 ALA D 9 ? ALA D 19 . ? 1_555 ? 7 AC2 3 GLN D 12 ? GLN D 22 . ? 1_555 ? # _atom_sites.entry_id 6JQY _atom_sites.fract_transf_matrix[1][1] 0.026286 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.012893 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019783 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026132 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 11 11 THR THR A . n A 1 2 MET 2 12 12 MET MET A . n A 1 3 THR 3 13 13 THR THR A . n A 1 4 SER 4 14 14 SER SER A . n A 1 5 VAL 5 15 15 VAL VAL A . n A 1 6 GLY 6 16 16 GLY GLY A . n A 1 7 VAL 7 17 17 VAL VAL A . n A 1 8 ARG 8 18 18 ARG ARG A . n A 1 9 ALA 9 19 19 ALA ALA A . n A 1 10 LEU 10 20 20 LEU LEU A . n A 1 11 ARG 11 21 21 ARG ARG A . n A 1 12 GLN 12 22 22 GLN GLN A . n A 1 13 GLN 13 23 23 GLN GLN A . n A 1 14 ALA 14 24 24 ALA ALA A . n A 1 15 SER 15 25 25 SER SER A . n A 1 16 GLU 16 26 26 GLU GLU A . n A 1 17 LEU 17 27 27 LEU LEU A . n A 1 18 LEU 18 28 28 LEU LEU A . n A 1 19 ARG 19 29 29 ARG ARG A . n A 1 20 ARG 20 30 30 ARG ARG A . n A 1 21 VAL 21 31 31 VAL VAL A . n A 1 22 GLU 22 32 32 GLU GLU A . n A 1 23 ALA 23 33 33 ALA ALA A . n A 1 24 GLY 24 34 34 GLY GLY A . n A 1 25 GLU 25 35 35 GLU GLU A . n A 1 26 THR 26 36 36 THR THR A . n A 1 27 ILE 27 37 37 ILE ILE A . n A 1 28 GLU 28 38 38 GLU GLU A . n A 1 29 ILE 29 39 39 ILE ILE A . n A 1 30 THR 30 40 40 THR THR A . n A 1 31 ASP 31 41 41 ASP ASP A . n A 1 32 ARG 32 42 42 ARG ARG A . n A 1 33 GLY 33 43 43 GLY GLY A . n A 1 34 ARG 34 44 44 ARG ARG A . n A 1 35 PRO 35 45 45 PRO PRO A . n A 1 36 VAL 36 46 46 VAL VAL A . n A 1 37 ALA 37 47 47 ALA ALA A . n A 1 38 LEU 38 48 48 LEU LEU A . n A 1 39 LEU 39 49 49 LEU LEU A . n A 1 40 SER 40 50 50 SER SER A . n A 1 41 PRO 41 51 51 PRO PRO A . n A 1 42 LEU 42 52 52 LEU LEU A . n A 1 43 PRO 43 53 53 PRO PRO A . n A 1 44 GLN 44 54 54 GLN GLN A . n B 1 1 THR 1 11 ? ? ? B . n B 1 2 MET 2 12 12 MET MET B . n B 1 3 THR 3 13 13 THR THR B . n B 1 4 SER 4 14 14 SER SER B . n B 1 5 VAL 5 15 15 VAL VAL B . n B 1 6 GLY 6 16 16 GLY GLY B . n B 1 7 VAL 7 17 17 VAL VAL B . n B 1 8 ARG 8 18 18 ARG ARG B . n B 1 9 ALA 9 19 19 ALA ALA B . n B 1 10 LEU 10 20 20 LEU LEU B . n B 1 11 ARG 11 21 21 ARG ARG B . n B 1 12 GLN 12 22 22 GLN GLN B . n B 1 13 GLN 13 23 23 GLN GLN B . n B 1 14 ALA 14 24 24 ALA ALA B . n B 1 15 SER 15 25 25 SER SER B . n B 1 16 GLU 16 26 26 GLU GLU B . n B 1 17 LEU 17 27 27 LEU LEU B . n B 1 18 LEU 18 28 28 LEU LEU B . n B 1 19 ARG 19 29 29 ARG ARG B . n B 1 20 ARG 20 30 30 ARG ARG B . n B 1 21 VAL 21 31 31 VAL VAL B . n B 1 22 GLU 22 32 32 GLU GLU B . n B 1 23 ALA 23 33 33 ALA ALA B . n B 1 24 GLY 24 34 34 GLY GLY B . n B 1 25 GLU 25 35 35 GLU GLU B . n B 1 26 THR 26 36 36 THR THR B . n B 1 27 ILE 27 37 37 ILE ILE B . n B 1 28 GLU 28 38 38 GLU GLU B . n B 1 29 ILE 29 39 39 ILE ILE B . n B 1 30 THR 30 40 40 THR THR B . n B 1 31 ASP 31 41 41 ASP ASP B . n B 1 32 ARG 32 42 42 ARG ARG B . n B 1 33 GLY 33 43 43 GLY GLY B . n B 1 34 ARG 34 44 44 ARG ARG B . n B 1 35 PRO 35 45 45 PRO PRO B . n B 1 36 VAL 36 46 46 VAL VAL B . n B 1 37 ALA 37 47 47 ALA ALA B . n B 1 38 LEU 38 48 48 LEU LEU B . n B 1 39 LEU 39 49 49 LEU LEU B . n B 1 40 SER 40 50 50 SER SER B . n B 1 41 PRO 41 51 51 PRO PRO B . n B 1 42 LEU 42 52 52 LEU LEU B . n B 1 43 PRO 43 53 53 PRO PRO B . n B 1 44 GLN 44 54 54 GLN GLN B . n C 1 1 THR 1 11 11 THR THR C . n C 1 2 MET 2 12 12 MET MET C . n C 1 3 THR 3 13 13 THR THR C . n C 1 4 SER 4 14 14 SER SER C . n C 1 5 VAL 5 15 15 VAL VAL C . n C 1 6 GLY 6 16 16 GLY GLY C . n C 1 7 VAL 7 17 17 VAL VAL C . n C 1 8 ARG 8 18 18 ARG ARG C . n C 1 9 ALA 9 19 19 ALA ALA C . n C 1 10 LEU 10 20 20 LEU LEU C . n C 1 11 ARG 11 21 21 ARG ARG C . n C 1 12 GLN 12 22 22 GLN GLN C . n C 1 13 GLN 13 23 23 GLN GLN C . n C 1 14 ALA 14 24 24 ALA ALA C . n C 1 15 SER 15 25 25 SER SER C . n C 1 16 GLU 16 26 26 GLU GLU C . n C 1 17 LEU 17 27 27 LEU LEU C . n C 1 18 LEU 18 28 28 LEU LEU C . n C 1 19 ARG 19 29 29 ARG ARG C . n C 1 20 ARG 20 30 30 ARG ARG C . n C 1 21 VAL 21 31 31 VAL VAL C . n C 1 22 GLU 22 32 32 GLU GLU C . n C 1 23 ALA 23 33 33 ALA ALA C . n C 1 24 GLY 24 34 34 GLY GLY C . n C 1 25 GLU 25 35 35 GLU GLU C . n C 1 26 THR 26 36 36 THR THR C . n C 1 27 ILE 27 37 37 ILE ILE C . n C 1 28 GLU 28 38 38 GLU GLU C . n C 1 29 ILE 29 39 39 ILE ILE C . n C 1 30 THR 30 40 40 THR THR C . n C 1 31 ASP 31 41 41 ASP ASP C . n C 1 32 ARG 32 42 42 ARG ARG C . n C 1 33 GLY 33 43 43 GLY GLY C . n C 1 34 ARG 34 44 44 ARG ARG C . n C 1 35 PRO 35 45 45 PRO PRO C . n C 1 36 VAL 36 46 46 VAL VAL C . n C 1 37 ALA 37 47 47 ALA ALA C . n C 1 38 LEU 38 48 48 LEU LEU C . n C 1 39 LEU 39 49 49 LEU LEU C . n C 1 40 SER 40 50 50 SER SER C . n C 1 41 PRO 41 51 51 PRO PRO C . n C 1 42 LEU 42 52 52 LEU LEU C . n C 1 43 PRO 43 53 53 PRO PRO C . n C 1 44 GLN 44 54 54 GLN GLN C . n D 1 1 THR 1 11 11 THR THR D . n D 1 2 MET 2 12 12 MET MET D . n D 1 3 THR 3 13 13 THR THR D . n D 1 4 SER 4 14 14 SER SER D . n D 1 5 VAL 5 15 15 VAL VAL D . n D 1 6 GLY 6 16 16 GLY GLY D . n D 1 7 VAL 7 17 17 VAL VAL D . n D 1 8 ARG 8 18 18 ARG ARG D . n D 1 9 ALA 9 19 19 ALA ALA D . n D 1 10 LEU 10 20 20 LEU LEU D . n D 1 11 ARG 11 21 21 ARG ARG D . n D 1 12 GLN 12 22 22 GLN GLN D . n D 1 13 GLN 13 23 23 GLN GLN D . n D 1 14 ALA 14 24 24 ALA ALA D . n D 1 15 SER 15 25 25 SER SER D . n D 1 16 GLU 16 26 26 GLU GLU D . n D 1 17 LEU 17 27 27 LEU LEU D . n D 1 18 LEU 18 28 28 LEU LEU D . n D 1 19 ARG 19 29 29 ARG ARG D . n D 1 20 ARG 20 30 30 ARG ARG D . n D 1 21 VAL 21 31 31 VAL VAL D . n D 1 22 GLU 22 32 32 GLU GLU D . n D 1 23 ALA 23 33 33 ALA ALA D . n D 1 24 GLY 24 34 34 GLY GLY D . n D 1 25 GLU 25 35 35 GLU GLU D . n D 1 26 THR 26 36 36 THR THR D . n D 1 27 ILE 27 37 37 ILE ILE D . n D 1 28 GLU 28 38 38 GLU GLU D . n D 1 29 ILE 29 39 39 ILE ILE D . n D 1 30 THR 30 40 40 THR THR D . n D 1 31 ASP 31 41 41 ASP ASP D . n D 1 32 ARG 32 42 42 ARG ARG D . n D 1 33 GLY 33 43 43 GLY GLY D . n D 1 34 ARG 34 44 44 ARG ARG D . n D 1 35 PRO 35 45 45 PRO PRO D . n D 1 36 VAL 36 46 46 VAL VAL D . n D 1 37 ALA 37 47 47 ALA ALA D . n D 1 38 LEU 38 48 48 LEU LEU D . n D 1 39 LEU 39 49 49 LEU LEU D . n D 1 40 SER 40 50 50 SER SER D . n D 1 41 PRO 41 51 51 PRO PRO D . n D 1 42 LEU 42 52 52 LEU LEU D . n D 1 43 PRO 43 53 53 PRO PRO D . n D 1 44 GLN 44 54 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACT 1 101 2 ACT ACT A . F 2 ACT 1 101 3 ACT ACT D . G 3 HOH 1 201 62 HOH HOH A . G 3 HOH 2 202 23 HOH HOH A . G 3 HOH 3 203 63 HOH HOH A . G 3 HOH 4 204 21 HOH HOH A . G 3 HOH 5 205 40 HOH HOH A . G 3 HOH 6 206 32 HOH HOH A . G 3 HOH 7 207 64 HOH HOH A . G 3 HOH 8 208 41 HOH HOH A . G 3 HOH 9 209 26 HOH HOH A . G 3 HOH 10 210 30 HOH HOH A . G 3 HOH 11 211 89 HOH HOH A . G 3 HOH 12 212 9 HOH HOH A . G 3 HOH 13 213 82 HOH HOH A . G 3 HOH 14 214 12 HOH HOH A . G 3 HOH 15 215 45 HOH HOH A . G 3 HOH 16 216 87 HOH HOH A . G 3 HOH 17 217 99 HOH HOH A . G 3 HOH 18 218 80 HOH HOH A . G 3 HOH 19 219 75 HOH HOH A . G 3 HOH 20 220 88 HOH HOH A . G 3 HOH 21 221 85 HOH HOH A . G 3 HOH 22 222 58 HOH HOH A . G 3 HOH 23 223 13 HOH HOH A . G 3 HOH 24 224 66 HOH HOH A . G 3 HOH 25 225 90 HOH HOH A . G 3 HOH 26 226 95 HOH HOH A . G 3 HOH 27 227 70 HOH HOH A . G 3 HOH 28 228 103 HOH HOH A . G 3 HOH 29 229 59 HOH HOH A . G 3 HOH 30 230 101 HOH HOH A . H 3 HOH 1 101 65 HOH HOH B . H 3 HOH 2 102 94 HOH HOH B . H 3 HOH 3 103 3 HOH HOH B . H 3 HOH 4 104 18 HOH HOH B . H 3 HOH 5 105 46 HOH HOH B . H 3 HOH 6 106 50 HOH HOH B . H 3 HOH 7 107 31 HOH HOH B . H 3 HOH 8 108 61 HOH HOH B . H 3 HOH 9 109 37 HOH HOH B . H 3 HOH 10 110 25 HOH HOH B . H 3 HOH 11 111 98 HOH HOH B . H 3 HOH 12 112 19 HOH HOH B . H 3 HOH 13 113 17 HOH HOH B . H 3 HOH 14 114 100 HOH HOH B . H 3 HOH 15 115 73 HOH HOH B . H 3 HOH 16 116 84 HOH HOH B . H 3 HOH 17 117 67 HOH HOH B . H 3 HOH 18 118 96 HOH HOH B . H 3 HOH 19 119 97 HOH HOH B . I 3 HOH 1 101 34 HOH HOH C . I 3 HOH 2 102 43 HOH HOH C . I 3 HOH 3 103 78 HOH HOH C . I 3 HOH 4 104 86 HOH HOH C . I 3 HOH 5 105 35 HOH HOH C . I 3 HOH 6 106 2 HOH HOH C . I 3 HOH 7 107 47 HOH HOH C . I 3 HOH 8 108 1 HOH HOH C . I 3 HOH 9 109 24 HOH HOH C . I 3 HOH 10 110 28 HOH HOH C . I 3 HOH 11 111 7 HOH HOH C . I 3 HOH 12 112 56 HOH HOH C . I 3 HOH 13 113 8 HOH HOH C . I 3 HOH 14 114 16 HOH HOH C . I 3 HOH 15 115 51 HOH HOH C . I 3 HOH 16 116 91 HOH HOH C . I 3 HOH 17 117 74 HOH HOH C . I 3 HOH 18 118 53 HOH HOH C . I 3 HOH 19 119 36 HOH HOH C . I 3 HOH 20 120 79 HOH HOH C . I 3 HOH 21 121 72 HOH HOH C . I 3 HOH 22 122 60 HOH HOH C . I 3 HOH 23 123 76 HOH HOH C . I 3 HOH 24 124 33 HOH HOH C . I 3 HOH 25 125 77 HOH HOH C . I 3 HOH 26 126 49 HOH HOH C . I 3 HOH 27 127 92 HOH HOH C . J 3 HOH 1 201 15 HOH HOH D . J 3 HOH 2 202 42 HOH HOH D . J 3 HOH 3 203 83 HOH HOH D . J 3 HOH 4 204 39 HOH HOH D . J 3 HOH 5 205 29 HOH HOH D . J 3 HOH 6 206 54 HOH HOH D . J 3 HOH 7 207 6 HOH HOH D . J 3 HOH 8 208 57 HOH HOH D . J 3 HOH 9 209 10 HOH HOH D . J 3 HOH 10 210 14 HOH HOH D . J 3 HOH 11 211 20 HOH HOH D . J 3 HOH 12 212 4 HOH HOH D . J 3 HOH 13 213 27 HOH HOH D . J 3 HOH 14 214 38 HOH HOH D . J 3 HOH 15 215 48 HOH HOH D . J 3 HOH 16 216 11 HOH HOH D . J 3 HOH 17 217 55 HOH HOH D . J 3 HOH 18 218 44 HOH HOH D . J 3 HOH 19 219 69 HOH HOH D . J 3 HOH 20 220 5 HOH HOH D . J 3 HOH 21 221 102 HOH HOH D . J 3 HOH 22 222 22 HOH HOH D . J 3 HOH 23 223 71 HOH HOH D . J 3 HOH 24 224 81 HOH HOH D . J 3 HOH 25 225 93 HOH HOH D . J 3 HOH 26 226 68 HOH HOH D . J 3 HOH 27 227 52 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,G,H 2 1 C,D,F,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1690 ? 1 MORE -13 ? 1 'SSA (A^2)' 5300 ? 2 'ABSA (A^2)' 1740 ? 2 MORE -13 ? 2 'SSA (A^2)' 5390 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-04-08 2 'Structure model' 1 1 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -9.4974 -1.8488 15.5443 0.2290 0.1290 0.1716 -0.0158 -0.0397 -0.0139 2.2776 4.5957 5.1595 -0.9024 0.0833 -0.2855 0.1010 -0.1772 -0.2017 0.3808 -0.0833 0.0282 0.0620 -0.0064 0.0187 'X-RAY DIFFRACTION' 2 ? refined -2.1349 6.4721 15.4475 0.2148 0.2278 0.1654 -0.0160 -0.0596 -0.0284 1.7830 2.8695 5.1029 0.5258 0.1413 0.5833 -0.0637 0.0828 -0.1077 0.1199 0.1551 -0.3557 -0.3701 0.7383 -0.0325 'X-RAY DIFFRACTION' 3 ? refined -11.6439 6.3178 -3.7265 0.2169 0.2529 0.1416 -0.0471 -0.0041 0.0062 3.0317 3.5161 2.0138 0.3743 1.6215 0.0819 -0.0296 0.6057 -0.0300 -0.4056 0.1581 -0.1195 -0.0704 0.5164 0.0266 'X-RAY DIFFRACTION' 4 ? refined -16.7630 14.6266 1.8250 0.1784 0.1053 0.1464 0.0008 -0.0377 -0.0232 3.4099 3.5232 3.3883 -0.7842 1.0091 -1.4749 -0.0128 -0.0231 -0.0046 0.0602 -0.0119 0.1966 -0.2769 -0.0290 0.0606 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain A and resseq 11:54)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain B and resseq 12:54)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain C and resseq 11:54)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain D and resseq 11:53)' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.11.1_2575: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C HOH 117 ? ? O C HOH 121 ? ? 1.96 2 1 O B HOH 118 ? ? O B HOH 119 ? ? 2.12 3 1 NH1 A ARG 30 ? ? O A HOH 201 ? ? 2.16 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CD D ARG 42 ? ? NE D ARG 42 ? ? CZ D ARG 42 ? ? 133.90 123.60 10.30 1.40 N 2 1 NE D ARG 42 ? ? CZ D ARG 42 ? ? NH1 D ARG 42 ? ? 115.45 120.30 -4.85 0.50 N 3 1 NE D ARG 42 ? ? CZ D ARG 42 ? ? NH2 D ARG 42 ? ? 125.12 120.30 4.82 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 12 ? ? 177.13 169.64 2 1 MET C 12 ? ? -138.52 -62.57 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 42 ? CG ? A ARG 32 CG 2 1 Y 1 A ARG 42 ? CD ? A ARG 32 CD 3 1 Y 1 A ARG 42 ? NE ? A ARG 32 NE 4 1 Y 1 A ARG 42 ? CZ ? A ARG 32 CZ 5 1 Y 1 A ARG 42 ? NH1 ? A ARG 32 NH1 6 1 Y 1 A ARG 42 ? NH2 ? A ARG 32 NH2 7 1 Y 1 A GLN 54 ? CG ? A GLN 44 CG 8 1 Y 1 A GLN 54 ? CD ? A GLN 44 CD 9 1 Y 1 A GLN 54 ? OE1 ? A GLN 44 OE1 10 1 Y 1 A GLN 54 ? NE2 ? A GLN 44 NE2 11 1 Y 1 B MET 12 ? CG ? B MET 2 CG 12 1 Y 1 B MET 12 ? SD ? B MET 2 SD 13 1 Y 1 B MET 12 ? CE ? B MET 2 CE 14 1 Y 1 B ARG 21 ? CG ? B ARG 11 CG 15 1 Y 1 B ARG 21 ? CD ? B ARG 11 CD 16 1 Y 1 B ARG 21 ? NE ? B ARG 11 NE 17 1 Y 1 B ARG 21 ? CZ ? B ARG 11 CZ 18 1 Y 1 B ARG 21 ? NH1 ? B ARG 11 NH1 19 1 Y 1 B ARG 21 ? NH2 ? B ARG 11 NH2 20 1 Y 1 B ARG 44 ? CG ? B ARG 34 CG 21 1 Y 1 B ARG 44 ? CD ? B ARG 34 CD 22 1 Y 1 B ARG 44 ? NE ? B ARG 34 NE 23 1 Y 1 B ARG 44 ? CZ ? B ARG 34 CZ 24 1 Y 1 B ARG 44 ? NH1 ? B ARG 34 NH1 25 1 Y 1 B ARG 44 ? NH2 ? B ARG 34 NH2 26 1 Y 1 B GLN 54 ? CG ? B GLN 44 CG 27 1 Y 1 B GLN 54 ? CD ? B GLN 44 CD 28 1 Y 1 B GLN 54 ? OE1 ? B GLN 44 OE1 29 1 Y 1 B GLN 54 ? NE2 ? B GLN 44 NE2 30 1 Y 1 C THR 11 ? OG1 ? C THR 1 OG1 31 1 Y 1 C THR 11 ? CG2 ? C THR 1 CG2 32 1 Y 1 C ARG 18 ? CG ? C ARG 8 CG 33 1 Y 1 C ARG 18 ? CD ? C ARG 8 CD 34 1 Y 1 C ARG 18 ? NE ? C ARG 8 NE 35 1 Y 1 C ARG 18 ? CZ ? C ARG 8 CZ 36 1 Y 1 C ARG 18 ? NH1 ? C ARG 8 NH1 37 1 Y 1 C ARG 18 ? NH2 ? C ARG 8 NH2 38 1 Y 1 C ARG 21 ? CG ? C ARG 11 CG 39 1 Y 1 C ARG 21 ? CD ? C ARG 11 CD 40 1 Y 1 C ARG 21 ? NE ? C ARG 11 NE 41 1 Y 1 C ARG 21 ? CZ ? C ARG 11 CZ 42 1 Y 1 C ARG 21 ? NH1 ? C ARG 11 NH1 43 1 Y 1 C ARG 21 ? NH2 ? C ARG 11 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B THR 11 ? B THR 1 2 1 Y 1 D GLN 54 ? D GLN 44 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASP N N N N 48 ASP CA C N S 49 ASP C C N N 50 ASP O O N N 51 ASP CB C N N 52 ASP CG C N N 53 ASP OD1 O N N 54 ASP OD2 O N N 55 ASP OXT O N N 56 ASP H H N N 57 ASP H2 H N N 58 ASP HA H N N 59 ASP HB2 H N N 60 ASP HB3 H N N 61 ASP HD2 H N N 62 ASP HXT H N N 63 GLN N N N N 64 GLN CA C N S 65 GLN C C N N 66 GLN O O N N 67 GLN CB C N N 68 GLN CG C N N 69 GLN CD C N N 70 GLN OE1 O N N 71 GLN NE2 N N N 72 GLN OXT O N N 73 GLN H H N N 74 GLN H2 H N N 75 GLN HA H N N 76 GLN HB2 H N N 77 GLN HB3 H N N 78 GLN HG2 H N N 79 GLN HG3 H N N 80 GLN HE21 H N N 81 GLN HE22 H N N 82 GLN HXT H N N 83 GLU N N N N 84 GLU CA C N S 85 GLU C C N N 86 GLU O O N N 87 GLU CB C N N 88 GLU CG C N N 89 GLU CD C N N 90 GLU OE1 O N N 91 GLU OE2 O N N 92 GLU OXT O N N 93 GLU H H N N 94 GLU H2 H N N 95 GLU HA H N N 96 GLU HB2 H N N 97 GLU HB3 H N N 98 GLU HG2 H N N 99 GLU HG3 H N N 100 GLU HE2 H N N 101 GLU HXT H N N 102 GLY N N N N 103 GLY CA C N N 104 GLY C C N N 105 GLY O O N N 106 GLY OXT O N N 107 GLY H H N N 108 GLY H2 H N N 109 GLY HA2 H N N 110 GLY HA3 H N N 111 GLY HXT H N N 112 HOH O O N N 113 HOH H1 H N N 114 HOH H2 H N N 115 ILE N N N N 116 ILE CA C N S 117 ILE C C N N 118 ILE O O N N 119 ILE CB C N S 120 ILE CG1 C N N 121 ILE CG2 C N N 122 ILE CD1 C N N 123 ILE OXT O N N 124 ILE H H N N 125 ILE H2 H N N 126 ILE HA H N N 127 ILE HB H N N 128 ILE HG12 H N N 129 ILE HG13 H N N 130 ILE HG21 H N N 131 ILE HG22 H N N 132 ILE HG23 H N N 133 ILE HD11 H N N 134 ILE HD12 H N N 135 ILE HD13 H N N 136 ILE HXT H N N 137 LEU N N N N 138 LEU CA C N S 139 LEU C C N N 140 LEU O O N N 141 LEU CB C N N 142 LEU CG C N N 143 LEU CD1 C N N 144 LEU CD2 C N N 145 LEU OXT O N N 146 LEU H H N N 147 LEU H2 H N N 148 LEU HA H N N 149 LEU HB2 H N N 150 LEU HB3 H N N 151 LEU HG H N N 152 LEU HD11 H N N 153 LEU HD12 H N N 154 LEU HD13 H N N 155 LEU HD21 H N N 156 LEU HD22 H N N 157 LEU HD23 H N N 158 LEU HXT H N N 159 MET N N N N 160 MET CA C N S 161 MET C C N N 162 MET O O N N 163 MET CB C N N 164 MET CG C N N 165 MET SD S N N 166 MET CE C N N 167 MET OXT O N N 168 MET H H N N 169 MET H2 H N N 170 MET HA H N N 171 MET HB2 H N N 172 MET HB3 H N N 173 MET HG2 H N N 174 MET HG3 H N N 175 MET HE1 H N N 176 MET HE2 H N N 177 MET HE3 H N N 178 MET HXT H N N 179 PRO N N N N 180 PRO CA C N S 181 PRO C C N N 182 PRO O O N N 183 PRO CB C N N 184 PRO CG C N N 185 PRO CD C N N 186 PRO OXT O N N 187 PRO H H N N 188 PRO HA H N N 189 PRO HB2 H N N 190 PRO HB3 H N N 191 PRO HG2 H N N 192 PRO HG3 H N N 193 PRO HD2 H N N 194 PRO HD3 H N N 195 PRO HXT H N N 196 SER N N N N 197 SER CA C N S 198 SER C C N N 199 SER O O N N 200 SER CB C N N 201 SER OG O N N 202 SER OXT O N N 203 SER H H N N 204 SER H2 H N N 205 SER HA H N N 206 SER HB2 H N N 207 SER HB3 H N N 208 SER HG H N N 209 SER HXT H N N 210 THR N N N N 211 THR CA C N S 212 THR C C N N 213 THR O O N N 214 THR CB C N R 215 THR OG1 O N N 216 THR CG2 C N N 217 THR OXT O N N 218 THR H H N N 219 THR H2 H N N 220 THR HA H N N 221 THR HB H N N 222 THR HG1 H N N 223 THR HG21 H N N 224 THR HG22 H N N 225 THR HG23 H N N 226 THR HXT H N N 227 VAL N N N N 228 VAL CA C N S 229 VAL C C N N 230 VAL O O N N 231 VAL CB C N N 232 VAL CG1 C N N 233 VAL CG2 C N N 234 VAL OXT O N N 235 VAL H H N N 236 VAL H2 H N N 237 VAL HA H N N 238 VAL HB H N N 239 VAL HG11 H N N 240 VAL HG12 H N N 241 VAL HG13 H N N 242 VAL HG21 H N N 243 VAL HG22 H N N 244 VAL HG23 H N N 245 VAL HXT H N N 246 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASP N CA sing N N 45 ASP N H sing N N 46 ASP N H2 sing N N 47 ASP CA C sing N N 48 ASP CA CB sing N N 49 ASP CA HA sing N N 50 ASP C O doub N N 51 ASP C OXT sing N N 52 ASP CB CG sing N N 53 ASP CB HB2 sing N N 54 ASP CB HB3 sing N N 55 ASP CG OD1 doub N N 56 ASP CG OD2 sing N N 57 ASP OD2 HD2 sing N N 58 ASP OXT HXT sing N N 59 GLN N CA sing N N 60 GLN N H sing N N 61 GLN N H2 sing N N 62 GLN CA C sing N N 63 GLN CA CB sing N N 64 GLN CA HA sing N N 65 GLN C O doub N N 66 GLN C OXT sing N N 67 GLN CB CG sing N N 68 GLN CB HB2 sing N N 69 GLN CB HB3 sing N N 70 GLN CG CD sing N N 71 GLN CG HG2 sing N N 72 GLN CG HG3 sing N N 73 GLN CD OE1 doub N N 74 GLN CD NE2 sing N N 75 GLN NE2 HE21 sing N N 76 GLN NE2 HE22 sing N N 77 GLN OXT HXT sing N N 78 GLU N CA sing N N 79 GLU N H sing N N 80 GLU N H2 sing N N 81 GLU CA C sing N N 82 GLU CA CB sing N N 83 GLU CA HA sing N N 84 GLU C O doub N N 85 GLU C OXT sing N N 86 GLU CB CG sing N N 87 GLU CB HB2 sing N N 88 GLU CB HB3 sing N N 89 GLU CG CD sing N N 90 GLU CG HG2 sing N N 91 GLU CG HG3 sing N N 92 GLU CD OE1 doub N N 93 GLU CD OE2 sing N N 94 GLU OE2 HE2 sing N N 95 GLU OXT HXT sing N N 96 GLY N CA sing N N 97 GLY N H sing N N 98 GLY N H2 sing N N 99 GLY CA C sing N N 100 GLY CA HA2 sing N N 101 GLY CA HA3 sing N N 102 GLY C O doub N N 103 GLY C OXT sing N N 104 GLY OXT HXT sing N N 105 HOH O H1 sing N N 106 HOH O H2 sing N N 107 ILE N CA sing N N 108 ILE N H sing N N 109 ILE N H2 sing N N 110 ILE CA C sing N N 111 ILE CA CB sing N N 112 ILE CA HA sing N N 113 ILE C O doub N N 114 ILE C OXT sing N N 115 ILE CB CG1 sing N N 116 ILE CB CG2 sing N N 117 ILE CB HB sing N N 118 ILE CG1 CD1 sing N N 119 ILE CG1 HG12 sing N N 120 ILE CG1 HG13 sing N N 121 ILE CG2 HG21 sing N N 122 ILE CG2 HG22 sing N N 123 ILE CG2 HG23 sing N N 124 ILE CD1 HD11 sing N N 125 ILE CD1 HD12 sing N N 126 ILE CD1 HD13 sing N N 127 ILE OXT HXT sing N N 128 LEU N CA sing N N 129 LEU N H sing N N 130 LEU N H2 sing N N 131 LEU CA C sing N N 132 LEU CA CB sing N N 133 LEU CA HA sing N N 134 LEU C O doub N N 135 LEU C OXT sing N N 136 LEU CB CG sing N N 137 LEU CB HB2 sing N N 138 LEU CB HB3 sing N N 139 LEU CG CD1 sing N N 140 LEU CG CD2 sing N N 141 LEU CG HG sing N N 142 LEU CD1 HD11 sing N N 143 LEU CD1 HD12 sing N N 144 LEU CD1 HD13 sing N N 145 LEU CD2 HD21 sing N N 146 LEU CD2 HD22 sing N N 147 LEU CD2 HD23 sing N N 148 LEU OXT HXT sing N N 149 MET N CA sing N N 150 MET N H sing N N 151 MET N H2 sing N N 152 MET CA C sing N N 153 MET CA CB sing N N 154 MET CA HA sing N N 155 MET C O doub N N 156 MET C OXT sing N N 157 MET CB CG sing N N 158 MET CB HB2 sing N N 159 MET CB HB3 sing N N 160 MET CG SD sing N N 161 MET CG HG2 sing N N 162 MET CG HG3 sing N N 163 MET SD CE sing N N 164 MET CE HE1 sing N N 165 MET CE HE2 sing N N 166 MET CE HE3 sing N N 167 MET OXT HXT sing N N 168 PRO N CA sing N N 169 PRO N CD sing N N 170 PRO N H sing N N 171 PRO CA C sing N N 172 PRO CA CB sing N N 173 PRO CA HA sing N N 174 PRO C O doub N N 175 PRO C OXT sing N N 176 PRO CB CG sing N N 177 PRO CB HB2 sing N N 178 PRO CB HB3 sing N N 179 PRO CG CD sing N N 180 PRO CG HG2 sing N N 181 PRO CG HG3 sing N N 182 PRO CD HD2 sing N N 183 PRO CD HD3 sing N N 184 PRO OXT HXT sing N N 185 SER N CA sing N N 186 SER N H sing N N 187 SER N H2 sing N N 188 SER CA C sing N N 189 SER CA CB sing N N 190 SER CA HA sing N N 191 SER C O doub N N 192 SER C OXT sing N N 193 SER CB OG sing N N 194 SER CB HB2 sing N N 195 SER CB HB3 sing N N 196 SER OG HG sing N N 197 SER OXT HXT sing N N 198 THR N CA sing N N 199 THR N H sing N N 200 THR N H2 sing N N 201 THR CA C sing N N 202 THR CA CB sing N N 203 THR CA HA sing N N 204 THR C O doub N N 205 THR C OXT sing N N 206 THR CB OG1 sing N N 207 THR CB CG2 sing N N 208 THR CB HB sing N N 209 THR OG1 HG1 sing N N 210 THR CG2 HG21 sing N N 211 THR CG2 HG22 sing N N 212 THR CG2 HG23 sing N N 213 THR OXT HXT sing N N 214 VAL N CA sing N N 215 VAL N H sing N N 216 VAL N H2 sing N N 217 VAL CA C sing N N 218 VAL CA CB sing N N 219 VAL CA HA sing N N 220 VAL C O doub N N 221 VAL C OXT sing N N 222 VAL CB CG1 sing N N 223 VAL CB CG2 sing N N 224 VAL CB HB sing N N 225 VAL CG1 HG11 sing N N 226 VAL CG1 HG12 sing N N 227 VAL CG1 HG13 sing N N 228 VAL CG2 HG21 sing N N 229 VAL CG2 HG22 sing N N 230 VAL CG2 HG23 sing N N 231 VAL OXT HXT sing N N 232 # _pdbx_audit_support.funding_organization 'Department of Biotechnology (India)' _pdbx_audit_support.country India _pdbx_audit_support.grant_number 'BT/PR12404/BRB/10/1362/ 2014' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4ZLX _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details 'The assembly is dimeric as analysis of CSS score in PISA is 1.0 between chain A and B as well as chain C and D.' #