HEADER LIGASE 03-APR-19 6JRE TITLE STRUCTURE OF N-TERMINAL DOMAIN OF PLASMODIUM VIVAX P43 (PFNTD) SOLVED TITLE 2 BY CO-SAD PHASING COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOACYL-TRNA SYNTHETASE-INTERACTING MULTIFUNCTIONAL COMPND 3 PROTEIN P43; COMPND 4 CHAIN: B; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN; COMPND 6 SYNONYM: METHIONINE-TRNA LIGASE,TRNA IMPORT PROTEIN TRIP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: PVC01_120068600, PVP01_1264700, PVT01_120069000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM-11 KEYWDS GST-LIKE DOMAIN, AIMP1, PLASMODIUM, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MANICKAM,K.HARLOS,M.SHARMA,S.GUPTA,A.SHARMA REVDAT 1 11-MAR-20 6JRE 0 JRNL AUTH S.GUPTA,J.CHHIBBER-GOEL,M.SHARMA,S.PARVEZ,K.HARLOS,A.SHARMA, JRNL AUTH 2 M.YOGAVEL JRNL TITL CRYSTAL STRUCTURES OF THE TWO DOMAINS THAT CONSTITUTE THE JRNL TITL 2 PLASMODIUM VIVAX P43 PROTEIN. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 76 135 2020 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 32038044 JRNL DOI 10.1107/S2059798319016413 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 6118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 305 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 37 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.4500 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1381 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.86000 REMARK 3 B22 (A**2) : 4.86000 REMARK 3 B33 (A**2) : -9.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.983 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.464 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1431 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1926 ; 1.470 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 165 ; 6.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;42.844 ;24.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;20.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.094 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 217 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1042 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 173 REMARK 3 RESIDUE RANGE : B 201 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): 18.564 27.139 12.174 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.1590 REMARK 3 T33: 0.2291 T12: 0.0555 REMARK 3 T13: -0.0674 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 6.4757 L22: 5.4845 REMARK 3 L33: 9.3318 L12: 2.3084 REMARK 3 L13: -2.4548 L23: -1.4954 REMARK 3 S TENSOR REMARK 3 S11: -0.1263 S12: 0.5364 S13: 0.4479 REMARK 3 S21: -0.0809 S22: 0.1037 S23: 0.2529 REMARK 3 S31: -0.6701 S32: -0.9022 S33: 0.0226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6JRE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.59 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6539 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 61.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 58.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.8 REMARK 200 DATA REDUNDANCY IN SHELL : 28.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE 2.15 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M SODIUM BROMIDE, 5% REMARK 280 ETHYL ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.70600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.69800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.69800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.35300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.69800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.69800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.05900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.69800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.69800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.35300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.69800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.69800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.05900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.70600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 LYS B 29 REMARK 465 ASP B 30 REMARK 465 ASP B 31 REMARK 465 GLU B 32 REMARK 465 LYS B 33 REMARK 465 GLU B 174 REMARK 465 VAL B 175 REMARK 465 ARG B 176 REMARK 465 ASP B 177 REMARK 465 SER B 178 REMARK 465 LEU B 179 REMARK 465 GLU B 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 48 CG CD OE1 NE2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 LYS B 171 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 8 -3.35 -144.85 REMARK 500 LYS B 50 -128.22 50.40 REMARK 500 GLU B 56 169.25 82.36 REMARK 500 CYS B 70 31.27 -96.25 REMARK 500 SER B 124 -167.38 -125.10 REMARK 500 ILE B 149 40.51 -98.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 202 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD1 REMARK 620 2 ASP B 78 OD2 49.1 REMARK 620 3 HIS B 122 NE2 124.1 124.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 201 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 91 CE1 REMARK 620 2 HIS B 91 NE2 32.4 REMARK 620 3 ASP B 95 OD2 93.5 67.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 202 DBREF1 6JRE B 1 180 UNP A0A1G4HHT8_PLAVI DBREF2 6JRE B A0A1G4HHT8 1 180 SEQADV 6JRE GLY B -3 UNP A0A1G4HHT EXPRESSION TAG SEQADV 6JRE ALA B -2 UNP A0A1G4HHT EXPRESSION TAG SEQADV 6JRE MET B -1 UNP A0A1G4HHT EXPRESSION TAG SEQADV 6JRE ALA B 0 UNP A0A1G4HHT EXPRESSION TAG SEQRES 1 B 184 GLY ALA MET ALA MET YCM VAL LEU THR LEU VAL GLN ASP SEQRES 2 B 184 ASP VAL LYS SER ASP ILE LEU LYS LEU VAL LEU ASP PHE SEQRES 3 B 184 ILE LYS ALA VAL VAL VAL LYS ASP ASP GLU LYS VAL ALA SEQRES 4 B 184 PHE PRO GLU VAL ARG HIS GLU LYS LYS ILE SER PHE GLN SEQRES 5 B 184 TYR LYS ASP LYS GLN TYR LYS GLU LEU PHE CYS THR LEU SEQRES 6 B 184 TYR ALA ILE ILE ASP ILE TYR ASP CYS TYR ASN GLU LEU SEQRES 7 B 184 PHE ASN GLU ASP GLU GLY LYS VAL SER GLU ASN GLU GLU SEQRES 8 B 184 PHE ILE PHE HIS LEU ALA SER ASP LYS PHE LYS LEU LYS SEQRES 9 B 184 GLN LEU ASP MET LYS HIS LEU ASN ASP LEU LEU CYS GLU SEQRES 10 B 184 LYS SER TYR ILE VAL SER ASN ARG HIS ALA SER ILE VAL SEQRES 11 B 184 ASP ILE PHE TYR PHE CYS SER VAL TYR LYS PRO LEU SER SEQRES 12 B 184 GLU MET PRO ALA LYS GLU ARG VAL GLU ILE SER HIS ILE SEQRES 13 B 184 TYR ARG TRP PHE LEU HIS ILE GLN GLU THR LEU VAL GLY SEQRES 14 B 184 LYS PHE THR THR LEU LYS LYS LEU GLU VAL ARG ASP SER SEQRES 15 B 184 LEU GLU MODRES 6JRE YCM B 2 CYS MODIFIED RESIDUE HET YCM B 2 10 HET CO B 201 1 HET CO B 202 1 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM CO COBALT (II) ION HETSYN YCM CYSTEINE-S-ACETAMIDE FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 2 CO 2(CO 2+) HELIX 1 AA1 ASP B 10 VAL B 26 1 17 HELIX 2 AA2 GLU B 56 ASP B 69 1 14 HELIX 3 AA3 CYS B 70 ASN B 76 1 7 HELIX 4 AA4 GLU B 77 GLY B 80 5 4 HELIX 5 AA5 LYS B 81 ASP B 95 1 15 HELIX 6 AA6 LYS B 100 LYS B 114 1 15 HELIX 7 AA7 SER B 124 GLU B 140 1 17 HELIX 8 AA8 PRO B 142 VAL B 147 1 6 HELIX 9 AA9 ILE B 149 LEU B 163 1 15 SHEET 1 AA1 4 ARG B 40 HIS B 41 0 SHEET 2 AA1 4 VAL B 3 LEU B 6 1 N LEU B 6 O ARG B 40 SHEET 3 AA1 4 SER B 46 GLN B 48 -1 O SER B 46 N THR B 5 SHEET 4 AA1 4 GLN B 53 LYS B 55 -1 O TYR B 54 N PHE B 47 LINK C YCM B 2 N VAL B 3 1555 1555 1.32 LINK OD1 ASP B 78 CO CO B 202 1555 1555 2.60 LINK OD2 ASP B 78 CO CO B 202 1555 1555 2.68 LINK CE1 HIS B 91 CO CO B 201 1555 1555 2.45 LINK NE2 HIS B 91 CO CO B 201 1555 1555 2.22 LINK OD2 ASP B 95 CO CO B 201 1555 1555 2.63 LINK NE2 HIS B 122 CO CO B 202 1555 1555 2.17 SITE 1 AC1 2 HIS B 91 ASP B 95 SITE 1 AC2 4 ASN B 76 ASP B 78 GLU B 79 HIS B 122 CRYST1 87.396 87.396 53.412 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011442 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018722 0.00000 HETATM 1 N YCM B 2 28.795 46.290 5.733 1.00141.82 N ANISOU 1 N YCM B 2 23884 10907 19092 -2601 775 3340 N HETATM 2 CA YCM B 2 28.330 44.974 6.099 1.00138.19 C ANISOU 2 CA YCM B 2 22735 11164 18607 -2134 547 3069 C HETATM 3 CB YCM B 2 29.015 44.580 7.393 1.00136.80 C ANISOU 3 CB YCM B 2 22285 11218 18473 -2591 484 2497 C HETATM 4 SG YCM B 2 29.259 42.846 7.435 1.00131.38 S ANISOU 4 SG YCM B 2 20649 11600 17668 -2499 244 2287 S HETATM 5 CD YCM B 2 30.144 42.787 8.943 1.00130.22 C ANISOU 5 CD YCM B 2 20422 11469 17587 -3039 189 1750 C HETATM 6 CE YCM B 2 31.265 41.824 8.715 1.00128.38 C ANISOU 6 CE YCM B 2 19553 11952 17276 -3530 84 1655 C HETATM 7 OZ1 YCM B 2 31.122 40.949 7.903 1.00129.25 O ANISOU 7 OZ1 YCM B 2 19092 12654 17362 -3250 -36 1589 O HETATM 8 NZ2 YCM B 2 32.382 41.991 9.402 1.00131.65 N ANISOU 8 NZ2 YCM B 2 20051 12307 17664 -4273 151 1651 N HETATM 9 C YCM B 2 26.865 45.047 6.334 1.00139.29 C ANISOU 9 C YCM B 2 23023 11012 18888 -1273 535 3153 C HETATM 10 O YCM B 2 26.431 45.343 7.457 1.00140.38 O ANISOU 10 O YCM B 2 23472 10654 19211 -1111 643 2839 O