HEADER HEME-BINDING PROTEIN 08-APR-19 6JSB TITLE CRYSTAL STRUCTURE OF HEME BINDING PROTEIN HTAB FROM CORYNEBACTERIUM TITLE 2 GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL MEMBRANE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HTAB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / SOURCE 3 DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025); SOURCE 4 ORGANISM_TAXID: 196627; SOURCE 5 STRAIN: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025; SOURCE 6 GENE: CGL0392; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS HEME, HEME TRANSPORT, METAL BINDING PROTEIN, HEME-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.MURAKI,S.AONO REVDAT 3 22-NOV-23 6JSB 1 LINK REVDAT 2 27-NOV-19 6JSB 1 JRNL REVDAT 1 20-NOV-19 6JSB 0 JRNL AUTH N.MURAKI,C.KITATSUJI,Y.OKAMOTO,T.UCHIDA,K.ISHIMORI,S.AONO JRNL TITL STRUCTURAL BASIS FOR THE HEME TRANSFER REACTION IN HEME JRNL TITL 2 UPTAKE MACHINERY FROM CORYNEBACTERIA. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 13864 2019 JRNL REFN ESSN 1364-548X JRNL PMID 31670736 JRNL DOI 10.1039/C9CC07369H REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 94184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1003 - 5.2733 0.88 2875 152 0.1883 0.1903 REMARK 3 2 5.2733 - 4.1872 0.95 2920 154 0.1371 0.1479 REMARK 3 3 4.1872 - 3.6584 0.98 3032 159 0.1490 0.1749 REMARK 3 4 3.6584 - 3.3242 0.99 3017 159 0.1863 0.2208 REMARK 3 5 3.3242 - 3.0860 1.00 3020 159 0.1945 0.2092 REMARK 3 6 3.0860 - 2.9041 1.00 3061 161 0.1906 0.1970 REMARK 3 7 2.9041 - 2.7587 1.00 2997 158 0.1852 0.2379 REMARK 3 8 2.7587 - 2.6387 1.00 3026 159 0.1873 0.2027 REMARK 3 9 2.6387 - 2.5371 1.00 3025 159 0.1772 0.2149 REMARK 3 10 2.5371 - 2.4496 1.00 2991 158 0.1755 0.1990 REMARK 3 11 2.4496 - 2.3730 1.00 2994 157 0.1812 0.2062 REMARK 3 12 2.3730 - 2.3052 1.00 3045 161 0.1734 0.1753 REMARK 3 13 2.3052 - 2.2445 1.00 2916 153 0.1700 0.2093 REMARK 3 14 2.2445 - 2.1897 1.00 3055 161 0.1683 0.1869 REMARK 3 15 2.1897 - 2.1400 1.00 2990 157 0.1642 0.1662 REMARK 3 16 2.1400 - 2.0944 1.00 2971 156 0.1633 0.1962 REMARK 3 17 2.0944 - 2.0525 1.00 3022 160 0.1716 0.1990 REMARK 3 18 2.0525 - 2.0138 1.00 2977 156 0.1732 0.2018 REMARK 3 19 2.0138 - 1.9778 1.00 2922 154 0.1772 0.1870 REMARK 3 20 1.9778 - 1.9443 1.00 3076 162 0.1781 0.2055 REMARK 3 21 1.9443 - 1.9130 1.00 2974 157 0.1867 0.2122 REMARK 3 22 1.9130 - 1.8835 1.00 2937 154 0.1837 0.2171 REMARK 3 23 1.8835 - 1.8558 1.00 3023 159 0.1804 0.2127 REMARK 3 24 1.8558 - 1.8297 1.00 2985 157 0.1743 0.1859 REMARK 3 25 1.8297 - 1.8050 1.00 2995 158 0.1804 0.1915 REMARK 3 26 1.8050 - 1.7815 1.00 2917 153 0.2015 0.1948 REMARK 3 27 1.7815 - 1.7593 1.00 3016 159 0.2048 0.2281 REMARK 3 28 1.7593 - 1.7381 1.00 2998 158 0.2113 0.2275 REMARK 3 29 1.7381 - 1.7178 1.00 2956 156 0.2325 0.2549 REMARK 3 30 1.7178 - 1.6985 0.93 2741 144 0.2913 0.3008 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3441 REMARK 3 ANGLE : 1.491 4782 REMARK 3 CHIRALITY : 0.113 514 REMARK 3 PLANARITY : 0.010 617 REMARK 3 DIHEDRAL : 18.115 1925 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 34 THROUGH 232) REMARK 3 ORIGIN FOR THE GROUP (A): 68.0974 5.1697 24.8574 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.1250 REMARK 3 T33: 0.1326 T12: 0.0003 REMARK 3 T13: 0.0125 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8895 L22: 0.8496 REMARK 3 L33: 1.2346 L12: 0.1124 REMARK 3 L13: 0.2414 L23: 0.1574 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.0651 S13: 0.0112 REMARK 3 S21: -0.1179 S22: 0.0387 S23: -0.1044 REMARK 3 S31: -0.0142 S32: 0.0450 S33: -0.0158 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 34 THROUGH 231) REMARK 3 ORIGIN FOR THE GROUP (A): 117.4771 35.8826 57.7266 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1297 REMARK 3 T33: 0.1628 T12: 0.0020 REMARK 3 T13: 0.0212 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.3207 L22: 0.8358 REMARK 3 L33: 0.6993 L12: 0.1622 REMARK 3 L13: -0.0239 L23: 0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0624 S13: -0.0093 REMARK 3 S21: -0.1544 S22: 0.0212 S23: -0.0688 REMARK 3 S31: 0.0433 S32: 0.0406 S33: -0.0134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.699 REMARK 200 RESOLUTION RANGE LOW (A) : 38.091 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6DSA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 38 % 2-ETHOXYETHANOL, 0.1 M TRIS-HCL REMARK 280 PH7.5, 0.05 M CALCIUM ACETATE, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 117.58500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 117.58500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 HIS A 232 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 35 NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 GLU B 99 CD OE1 OE2 REMARK 470 GLU B 188 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 49 -67.42 74.39 REMARK 500 ARG A 50 119.37 -167.86 REMARK 500 ASN A 63 48.57 -147.03 REMARK 500 LYS A 85 -135.54 60.90 REMARK 500 MET A 206 30.62 -95.37 REMARK 500 TRP B 47 110.50 -162.89 REMARK 500 VAL B 49 -69.19 72.51 REMARK 500 ARG B 50 119.05 -167.71 REMARK 500 ASN B 63 50.99 -146.67 REMARK 500 LYS B 85 -135.67 56.67 REMARK 500 MET B 206 30.13 -96.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 56 OH REMARK 620 2 HEM A 301 NA 90.5 REMARK 620 3 HEM A 301 NB 83.8 84.6 REMARK 620 4 HEM A 301 NC 90.3 172.2 87.8 REMARK 620 5 HEM A 301 ND 97.7 94.8 178.4 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 56 OH REMARK 620 2 HEM A 301 NA 100.0 REMARK 620 3 HEM A 301 NB 101.7 91.9 REMARK 620 4 HEM A 301 NC 99.1 158.0 94.7 REMARK 620 5 HEM A 301 ND 98.0 84.6 160.4 82.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 188 OE1 REMARK 620 2 GLU A 188 OE2 52.7 REMARK 620 3 HOH A 728 O 116.3 79.4 REMARK 620 4 HOH A 732 O 84.4 108.5 72.9 REMARK 620 5 GLU B 226 OE1 40.5 85.7 108.2 46.9 REMARK 620 6 HOH B 627 O 161.9 143.8 79.5 92.8 128.9 REMARK 620 7 HOH B 641 O 93.0 84.3 124.5 160.9 123.1 83.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 191 O REMARK 620 2 HOH A 611 O 91.8 REMARK 620 3 HOH A 624 O 89.0 145.6 REMARK 620 4 HOH A 634 O 89.2 72.4 73.2 REMARK 620 5 THR B 191 O 85.0 16.2 130.6 57.8 REMARK 620 6 HOH B 607 O 90.4 69.1 145.3 141.5 83.8 REMARK 620 7 HOH B 623 O 89.8 140.6 73.7 146.9 154.8 71.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 56 OH REMARK 620 2 HEM B 300 NA 98.5 REMARK 620 3 HEM B 300 NB 99.3 91.0 REMARK 620 4 HEM B 300 NC 95.4 164.4 93.6 REMARK 620 5 HEM B 300 ND 95.0 86.9 165.7 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 56 OH REMARK 620 2 HEM B 300 NA 90.5 REMARK 620 3 HEM B 300 NB 86.5 88.0 REMARK 620 4 HEM B 300 NC 86.9 176.4 89.4 REMARK 620 5 HEM B 300 ND 90.7 92.8 177.1 89.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 300 DBREF 6JSB A 35 228 UNP Q8NTB5 Q8NTB5_CORGL 35 228 DBREF 6JSB B 35 228 UNP Q8NTB5 Q8NTB5_CORGL 35 228 SEQADV 6JSB MET A 34 UNP Q8NTB5 INITIATING METHIONINE SEQADV 6JSB LEU A 229 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB GLU A 230 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS A 231 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS A 232 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS A 233 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS A 234 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS A 235 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS A 236 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB MET B 34 UNP Q8NTB5 INITIATING METHIONINE SEQADV 6JSB LEU B 229 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB GLU B 230 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS B 231 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS B 232 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS B 233 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS B 234 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS B 235 UNP Q8NTB5 EXPRESSION TAG SEQADV 6JSB HIS B 236 UNP Q8NTB5 EXPRESSION TAG SEQRES 1 A 203 MET LYS CYS ARG VAL VAL THR THR THR GLY THR ALA ASP SEQRES 2 A 203 TRP SER VAL ARG GLU SER PHE ASN ASN TYR LEU GLU GLY SEQRES 3 A 203 PRO ILE ALA ASN GLY ALA ALA TYR LYS TYR HIS GLY GLY SEQRES 4 A 203 ILE GLU VAL ARG ASP GLY VAL GLU THR THR GLY THR LYS SEQRES 5 A 203 SER ALA ARG GLU PHE THR TRP PRO VAL LEU GLY SER GLU SEQRES 6 A 203 GLU GLY ALA VAL LYS LEU GLY GLY GLY VAL HIS TRP THR SEQRES 7 A 203 GLY HIS ASN HIS TYR SER GLY ASP ASP GLU SER GLN ALA SEQRES 8 A 203 PRO ASP ASN PHE ILE LEU ASP LEU ASP PHE SER ASN PRO SEQRES 9 A 203 THR VAL LYS PHE ASP GLY ASN GLU GLY THR LEU LEU VAL SEQRES 10 A 203 ASP PHE LYS SER ARG GLU PHE VAL ASP THR LYS THR VAL SEQRES 11 A 203 ALA ASP PHE LEU THR GLY THR GLN ALA GLU LEU ALA THR SEQRES 12 A 203 ILE THR PHE ASP GLU PRO ILE ASP LEU THR GLN GLU ASN SEQRES 13 A 203 VAL THR VAL THR GLY GLN THR LYS LEU THR ALA THR GLY SEQRES 14 A 203 VAL ASP VAL MET GLY THR PHE TYR PRO GLU GLY GLU ALA SEQRES 15 A 203 LEU ALA PRO ILE THR LEU ASN LEU THR ASN GLU VAL VAL SEQRES 16 A 203 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 203 MET LYS CYS ARG VAL VAL THR THR THR GLY THR ALA ASP SEQRES 2 B 203 TRP SER VAL ARG GLU SER PHE ASN ASN TYR LEU GLU GLY SEQRES 3 B 203 PRO ILE ALA ASN GLY ALA ALA TYR LYS TYR HIS GLY GLY SEQRES 4 B 203 ILE GLU VAL ARG ASP GLY VAL GLU THR THR GLY THR LYS SEQRES 5 B 203 SER ALA ARG GLU PHE THR TRP PRO VAL LEU GLY SER GLU SEQRES 6 B 203 GLU GLY ALA VAL LYS LEU GLY GLY GLY VAL HIS TRP THR SEQRES 7 B 203 GLY HIS ASN HIS TYR SER GLY ASP ASP GLU SER GLN ALA SEQRES 8 B 203 PRO ASP ASN PHE ILE LEU ASP LEU ASP PHE SER ASN PRO SEQRES 9 B 203 THR VAL LYS PHE ASP GLY ASN GLU GLY THR LEU LEU VAL SEQRES 10 B 203 ASP PHE LYS SER ARG GLU PHE VAL ASP THR LYS THR VAL SEQRES 11 B 203 ALA ASP PHE LEU THR GLY THR GLN ALA GLU LEU ALA THR SEQRES 12 B 203 ILE THR PHE ASP GLU PRO ILE ASP LEU THR GLN GLU ASN SEQRES 13 B 203 VAL THR VAL THR GLY GLN THR LYS LEU THR ALA THR GLY SEQRES 14 B 203 VAL ASP VAL MET GLY THR PHE TYR PRO GLU GLY GLU ALA SEQRES 15 B 203 LEU ALA PRO ILE THR LEU ASN LEU THR ASN GLU VAL VAL SEQRES 16 B 203 LEU GLU HIS HIS HIS HIS HIS HIS HET HEM A 301 86 HET CA A 302 1 HET CA A 303 1 HET HEM B 300 86 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CA 2(CA 2+) FORMUL 7 HOH *300(H2 O) HELIX 1 AA1 ARG A 50 GLU A 58 1 9 HELIX 2 AA2 GLY A 59 GLY A 64 1 6 HELIX 3 AA3 THR A 84 ARG A 88 5 5 HELIX 4 AA4 ASP A 120 ASP A 126 5 7 HELIX 5 AA5 THR A 199 MET A 206 1 8 HELIX 6 AA6 ARG B 50 GLU B 58 1 9 HELIX 7 AA7 GLY B 59 GLY B 64 1 6 HELIX 8 AA8 THR B 84 ARG B 88 5 5 HELIX 9 AA9 ASP B 120 ASP B 126 5 7 HELIX 10 AB1 THR B 199 MET B 206 1 8 SHEET 1 AA1 6 GLU A 80 THR A 82 0 SHEET 2 AA1 6 GLU A 89 GLU A 98 -1 O THR A 91 N GLU A 80 SHEET 3 AA1 6 ALA A 101 LEU A 104 -1 O LYS A 103 N LEU A 95 SHEET 4 AA1 6 PHE A 128 ASP A 142 -1 O VAL A 139 N VAL A 102 SHEET 5 AA1 6 GLY A 107 ASN A 114 -1 N TRP A 110 O LEU A 132 SHEET 6 AA1 6 GLY A 72 ARG A 76 -1 N GLY A 72 O THR A 111 SHEET 1 AA210 GLU A 80 THR A 82 0 SHEET 2 AA210 GLU A 89 GLU A 98 -1 O THR A 91 N GLU A 80 SHEET 3 AA210 LYS A 35 TRP A 47 -1 N ALA A 45 O TRP A 92 SHEET 4 AA210 ILE A 219 HIS A 231 -1 O GLU A 230 N CYS A 36 SHEET 5 AA210 ASN A 189 LEU A 198 -1 N VAL A 192 O LEU A 221 SHEET 6 AA210 PHE A 166 PHE A 179 -1 N THR A 178 O GLN A 195 SHEET 7 AA210 GLU A 145 ARG A 155 -1 N SER A 154 O LEU A 167 SHEET 8 AA210 PHE A 128 ASP A 142 -1 N THR A 138 O LEU A 149 SHEET 9 AA210 GLY A 107 ASN A 114 -1 N TRP A 110 O LEU A 132 SHEET 10 AA210 GLY A 72 ARG A 76 -1 N GLY A 72 O THR A 111 SHEET 1 AA3 6 GLU A 80 THR A 82 0 SHEET 2 AA3 6 GLU A 89 GLU A 98 -1 O THR A 91 N GLU A 80 SHEET 3 AA3 6 LYS A 35 TRP A 47 -1 N ALA A 45 O TRP A 92 SHEET 4 AA3 6 LYS B 35 TRP B 47 -1 O ARG B 37 N LYS A 35 SHEET 5 AA3 6 GLU B 89 GLU B 98 -1 O TRP B 92 N ALA B 45 SHEET 6 AA3 6 GLU B 80 THR B 82 -1 N GLU B 80 O THR B 91 SHEET 1 AA411 GLU A 80 THR A 82 0 SHEET 2 AA411 GLU A 89 GLU A 98 -1 O THR A 91 N GLU A 80 SHEET 3 AA411 LYS A 35 TRP A 47 -1 N ALA A 45 O TRP A 92 SHEET 4 AA411 LYS B 35 TRP B 47 -1 O ARG B 37 N LYS A 35 SHEET 5 AA411 ILE B 219 GLU B 230 -1 O GLU B 230 N CYS B 36 SHEET 6 AA411 ASN B 189 LEU B 198 -1 N GLY B 194 O ILE B 219 SHEET 7 AA411 PHE B 166 PHE B 179 -1 N THR B 178 O GLN B 195 SHEET 8 AA411 GLU B 145 ARG B 155 -1 N LEU B 148 O ALA B 175 SHEET 9 AA411 PHE B 128 ASP B 142 -1 N THR B 138 O LEU B 149 SHEET 10 AA411 GLY B 107 ASN B 114 -1 N TRP B 110 O LEU B 132 SHEET 11 AA411 GLY B 72 ARG B 76 -1 N GLU B 74 O HIS B 109 SHEET 1 AA5 9 GLU A 80 THR A 82 0 SHEET 2 AA5 9 GLU A 89 GLU A 98 -1 O THR A 91 N GLU A 80 SHEET 3 AA5 9 LYS A 35 TRP A 47 -1 N ALA A 45 O TRP A 92 SHEET 4 AA5 9 LYS B 35 TRP B 47 -1 O ARG B 37 N LYS A 35 SHEET 5 AA5 9 GLU B 89 GLU B 98 -1 O TRP B 92 N ALA B 45 SHEET 6 AA5 9 ALA B 101 LEU B 104 -1 O LYS B 103 N LEU B 95 SHEET 7 AA5 9 PHE B 128 ASP B 142 -1 O VAL B 139 N VAL B 102 SHEET 8 AA5 9 GLY B 107 ASN B 114 -1 N TRP B 110 O LEU B 132 SHEET 9 AA5 9 GLY B 72 ARG B 76 -1 N GLU B 74 O HIS B 109 SSBOND 1 CYS A 36 CYS B 36 1555 1555 2.05 LINK OH TYR A 56 FE AHEM A 301 1555 1555 2.47 LINK OH TYR A 56 FE BHEM A 301 1555 1555 2.13 LINK OE1 GLU A 188 CA CA A 303 1555 1555 2.55 LINK OE2 GLU A 188 CA CA A 303 1555 1555 2.37 LINK O THR A 191 CA CA A 302 1555 1555 2.36 LINK CA CA A 302 O HOH A 611 1555 1555 2.50 LINK CA CA A 302 O HOH A 624 1555 1555 2.39 LINK CA CA A 302 O HOH A 634 1555 1555 2.40 LINK CA CA A 302 O THR B 191 2666 1555 2.39 LINK CA CA A 302 O HOH B 607 1555 2646 2.44 LINK CA CA A 302 O HOH B 623 1555 2646 2.41 LINK CA CA A 303 O HOH A 728 1555 1555 2.41 LINK CA CA A 303 O HOH A 732 1555 1555 2.33 LINK CA CA A 303 OE1 GLU B 226 1565 1555 2.56 LINK CA CA A 303 O HOH B 627 1555 1545 2.42 LINK CA CA A 303 O HOH B 641 1555 1545 2.31 LINK OH TYR B 56 FE AHEM B 300 1555 1555 2.13 LINK OH TYR B 56 FE BHEM B 300 1555 1555 2.43 SITE 1 AC1 16 SER A 52 PHE A 53 TYR A 56 ILE A 61 SITE 2 AC1 16 TYR A 67 HIS A 113 ILE A 129 LEU A 130 SITE 3 AC1 16 ARG A 155 PHE A 157 THR A 160 MET A 206 SITE 4 AC1 16 GLY A 207 PHE A 209 TYR A 210 HOH A 615 SITE 1 AC2 7 THR A 191 HOH A 611 HOH A 624 HOH A 634 SITE 2 AC2 7 THR B 191 HOH B 607 HOH B 623 SITE 1 AC3 6 GLU A 188 HOH A 728 HOH A 732 GLU B 226 SITE 2 AC3 6 HOH B 627 HOH B 641 SITE 1 AC4 17 SER B 52 PHE B 53 TYR B 56 ILE B 61 SITE 2 AC4 17 TYR B 67 HIS B 113 ILE B 129 LEU B 130 SITE 3 AC4 17 ARG B 155 PHE B 157 THR B 160 MET B 206 SITE 4 AC4 17 GLY B 207 PHE B 209 TYR B 210 HOH B 606 SITE 5 AC4 17 HOH B 609 CRYST1 235.170 33.730 126.620 90.00 121.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004252 0.000000 0.002569 0.00000 SCALE2 0.000000 0.029647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009227 0.00000