HEADER HYDROLASE/IMMUNE SYSTEM 08-APR-19 6JSZ TITLE BACE2 XAPERONE COMPLEX WITH N-{3-[(5R)-3-AMINO-5-METHYL-9,9-DIOXO-2, TITLE 2 9LAMBDA6-DITHIA-4-AZASPIRO[5.5]UNDEC-3-EN-5-YL]-4-FLUOROPHENYL}-5- TITLE 3 (FLUOROMETHOXY)PYRAZINE-2-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTIC-LIKE PROTEASE 56 KDA,ASPARTYL PROTEASE 1,ASP 1, COMPND 5 BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 2,BETA-SITE APP COMPND 6 CLEAVING ENZYME 2,DOWN REGION ASPARTIC PROTEASE,DRAP,MEMAPSIN-1, COMPND 7 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1,THETA-SECRETASE; COMPND 8 EC: 3.4.23.45; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: XAPERONE; COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE2, AEPLC, ALP56, ASP21, CDA13, UNQ418/PRO852; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS BACE2, HYDROLASE, HYDROLASE-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.FUJIMOTO,E.MATSUOKA,N.ASADA,G.TADANO,T.YAMAMOTO,K.NAKAHARA, AUTHOR 2 K.FUCHINO,H.ITO,N.KANEGAWA,D.MOECHARS,H.J.M.GIJSEN,K.I.KUSAKABE REVDAT 2 22-NOV-23 6JSZ 1 REMARK REVDAT 1 28-AUG-19 6JSZ 0 JRNL AUTH K.FUJIMOTO,E.MATSUOKA,N.ASADA,G.TADANO,T.YAMAMOTO, JRNL AUTH 2 K.NAKAHARA,K.FUCHINO,H.ITO,N.KANEGAWA,D.MOECHARS, JRNL AUTH 3 H.J.M.GIJSEN,K.I.KUSAKABE JRNL TITL STRUCTURE-BASED DESIGN OF SELECTIVE BETA-SITE AMYLOID JRNL TITL 2 PRECURSOR PROTEIN CLEAVING ENZYME 1 (BACE1) INHIBITORS: JRNL TITL 3 TARGETING THE FLAP TO GAIN SELECTIVITY OVER BACE2. JRNL REF J.MED.CHEM. V. 62 5080 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 31021626 JRNL DOI 10.1021/ACS.JMEDCHEM.9B00309 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0151 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 74276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4099 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 278 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -1.80000 REMARK 3 B33 (A**2) : 2.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.251 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3711 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3403 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5052 ; 1.439 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7799 ; 1.187 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.859 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;33.944 ;23.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 554 ;11.010 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;12.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4228 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 865 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78375 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 61.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03500 REMARK 200 FOR THE DATA SET : 19.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3ZKG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 25% PEG 3350, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.77100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.56750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.23350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.56750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.77100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.23350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 LEU A 175 REMARK 465 PRO A 176 REMARK 465 VAL A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ASN A 183 REMARK 465 THR A 284 REMARK 465 ASN A 285 REMARK 465 SER A 286 REMARK 465 GLU A 287 REMARK 465 THR A 288 REMARK 465 PRO A 289 REMARK 465 MET A 323 REMARK 465 GLY A 324 REMARK 465 ALA A 325 REMARK 465 GLY A 326 REMARK 465 LEU A 327 REMARK 465 ASN A 328 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 60 CG CD REMARK 470 SER A 62 OG REMARK 470 TYR A 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 THR A 66 OG1 CG2 REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 LYS A 105 NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ASN A 123 CG OD1 ND2 REMARK 470 PRO A 127 CG CD REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 LEU A 266 CG CD1 CD2 REMARK 470 PRO A 268 CG CD REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 GLN A 279 CG CD OE1 NE2 REMARK 470 SER A 291 OG REMARK 470 TYR A 292 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL D 161 CG1 CG2 REMARK 470 LYS D 202 NZ REMARK 470 LYS D 224 CG CD CE NZ REMARK 470 ARG D 235 CZ NH1 NH2 REMARK 470 GLU D 248 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 338 O HOH D 398 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 210 -75.66 -149.02 REMARK 500 ASP A 236 -66.18 76.57 REMARK 500 LYS A 237 154.81 174.21 REMARK 500 ASN A 341 -70.90 -137.24 REMARK 500 VAL D 207 -61.59 -100.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C7O A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6JSE RELATED DB: PDB REMARK 900 RELATED ID: 6JSF RELATED DB: PDB REMARK 900 RELATED ID: 6JSG RELATED DB: PDB REMARK 900 RELATED ID: 6JSN RELATED DB: PDB DBREF 6JSZ A 13 398 UNP Q9Y5Z0 BACE2_HUMAN 75 460 DBREF 6JSZ D 161 271 PDB 6JSZ 6JSZ 161 271 SEQRES 1 A 386 ALA ASN PHE LEU ALA MET VAL ASP ASN LEU GLN GLY ASP SEQRES 2 A 386 SER GLY ARG GLY TYR TYR LEU GLU MET LEU ILE GLY THR SEQRES 3 A 386 PRO PRO GLN LYS LEU GLN ILE LEU VAL ASP THR GLY SER SEQRES 4 A 386 SER ASN PHE ALA VAL ALA GLY THR PRO HIS SER TYR ILE SEQRES 5 A 386 ASP THR TYR PHE ASP THR GLU ARG SER SER THR TYR ARG SEQRES 6 A 386 SER LYS GLY PHE ASP VAL THR VAL LYS TYR THR GLN GLY SEQRES 7 A 386 SER TRP THR GLY PHE VAL GLY GLU ASP LEU VAL THR ILE SEQRES 8 A 386 PRO LYS GLY PHE ASN THR SER PHE LEU VAL ASN ILE ALA SEQRES 9 A 386 THR ILE PHE GLU SER GLU ASN PHE PHE LEU PRO GLY ILE SEQRES 10 A 386 LYS TRP ASN GLY ILE LEU GLY LEU ALA TYR ALA THR LEU SEQRES 11 A 386 ALA LYS PRO SER SER SER LEU GLU THR PHE PHE ASP SER SEQRES 12 A 386 LEU VAL THR GLN ALA ASN ILE PRO ASN VAL PHE SER MET SEQRES 13 A 386 GLN MET CYS GLY ALA GLY LEU PRO VAL ALA GLY SER GLY SEQRES 14 A 386 THR ASN GLY GLY SER LEU VAL LEU GLY GLY ILE GLU PRO SEQRES 15 A 386 SER LEU TYR LYS GLY ASP ILE TRP TYR THR PRO ILE LYS SEQRES 16 A 386 GLU GLU TRP TYR TYR GLN ILE GLU ILE LEU LYS LEU GLU SEQRES 17 A 386 ILE GLY GLY GLN SER LEU ASN LEU ASP CYS ARG GLU TYR SEQRES 18 A 386 ASN ALA ASP LYS ALA ILE VAL ASP SER GLY THR THR LEU SEQRES 19 A 386 LEU ARG LEU PRO GLN LYS VAL PHE ASP ALA VAL VAL GLU SEQRES 20 A 386 ALA VAL ALA ARG ALA SER LEU ILE PRO GLU PHE SER ASP SEQRES 21 A 386 GLY PHE TRP THR GLY SER GLN LEU ALA CYS TRP THR ASN SEQRES 22 A 386 SER GLU THR PRO TRP SER TYR PHE PRO LYS ILE SER ILE SEQRES 23 A 386 TYR LEU ARG ASP GLU ASN SER SER ARG SER PHE ARG ILE SEQRES 24 A 386 THR ILE LEU PRO GLN LEU TYR ILE GLN PRO MET MET GLY SEQRES 25 A 386 ALA GLY LEU ASN TYR GLU CYS TYR ARG PHE GLY ILE SER SEQRES 26 A 386 PRO SER THR ASN ALA LEU VAL ILE GLY ALA THR VAL MET SEQRES 27 A 386 GLU GLY PHE TYR VAL ILE PHE ASP ARG ALA GLN LYS ARG SEQRES 28 A 386 VAL GLY PHE ALA ALA SER PRO CYS ALA GLU ILE ALA GLY SEQRES 29 A 386 ALA ALA VAL SER GLU ILE SER GLY PRO PHE SER THR GLU SEQRES 30 A 386 ASP VAL ALA SER ASN CYS VAL PRO ALA SEQRES 1 D 111 VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN PRO SEQRES 2 D 111 GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY PHE SEQRES 3 D 111 THR PHE SER SER ALA ILE MET THR TRP VAL ARG GLN ALA SEQRES 4 D 111 PRO GLY LYS GLY ARG GLU TRP VAL SER THR ILE GLY SER SEQRES 5 D 111 ASP GLY SER ILE THR THR TYR ALA ASP SER VAL LYS GLY SEQRES 6 D 111 ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN THR LEU SEQRES 7 D 111 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 D 111 VAL TYR TYR CYS THR SER ALA GLY ARG ARG GLY PRO GLY SEQRES 9 D 111 THR GLN VAL THR VAL SER SER HET C7O A 401 34 HET CL A 402 1 HETNAM C7O N-[3-[(5R)-3-AZANYL-5-METHYL-9,9-BIS(OXIDANYLIDENE)-2, HETNAM 2 C7O 9$L^{6}-DITHIA-4-AZASPIRO[5.5]UNDEC-3-EN-5-YL]-4- HETNAM 3 C7O FLUORANYL-PHENYL]-5-(FLUORANYLMETHOXY)PYRAZINE-2- HETNAM 4 C7O CARBOXAMIDE HETNAM CL CHLORIDE ION FORMUL 3 C7O C21 H23 F2 N5 O4 S2 FORMUL 4 CL CL 1- FORMUL 5 HOH *299(H2 O) HELIX 1 AA1 ASP A 69 SER A 73 5 5 HELIX 2 AA2 TYR A 139 ALA A 143 5 5 HELIX 3 AA3 THR A 151 ASN A 161 1 11 HELIX 4 AA4 GLU A 193 TYR A 197 5 5 HELIX 5 AA5 ASP A 229 TYR A 233 5 5 HELIX 6 AA6 GLN A 251 SER A 265 1 15 HELIX 7 AA7 SER A 271 GLY A 277 1 7 HELIX 8 AA8 LEU A 314 TYR A 318 1 5 HELIX 9 AA9 GLY A 346 GLU A 351 1 6 HELIX 10 AB1 THR D 187 ALA D 191 5 5 HELIX 11 AB2 LYS D 246 THR D 250 5 5 SHEET 1 AA1 8 LEU A 22 GLN A 23 0 SHEET 2 AA1 8 TYR A 31 ILE A 36 -1 O TYR A 31 N GLN A 23 SHEET 3 AA1 8 GLN A 41 ASP A 48 -1 O ILE A 45 N LEU A 32 SHEET 4 AA1 8 GLY A 133 GLY A 136 1 O LEU A 135 N LEU A 46 SHEET 5 AA1 8 PHE A 54 ALA A 57 -1 N ALA A 55 O ILE A 134 SHEET 6 AA1 8 PHE A 111 GLU A 122 1 O ILE A 118 N VAL A 56 SHEET 7 AA1 8 GLY A 90 THR A 102 -1 N GLY A 97 O ILE A 115 SHEET 8 AA1 8 ARG A 77 TYR A 87 -1 N ARG A 77 O GLU A 98 SHEET 1 AA2 4 LEU A 22 GLN A 23 0 SHEET 2 AA2 4 TYR A 31 ILE A 36 -1 O TYR A 31 N GLN A 23 SHEET 3 AA2 4 GLY A 90 THR A 102 -1 O THR A 102 N LEU A 35 SHEET 4 AA2 4 ARG A 77 TYR A 87 -1 N ARG A 77 O GLU A 98 SHEET 1 AA3 6 GLY A 185 LEU A 189 0 SHEET 2 AA3 6 PHE A 166 MET A 170 -1 N SER A 167 O VAL A 188 SHEET 3 AA3 6 PHE A 353 ASP A 358 -1 O PHE A 357 N PHE A 166 SHEET 4 AA3 6 ARG A 363 ALA A 368 -1 O ALA A 367 N TYR A 354 SHEET 5 AA3 6 TRP A 202 GLU A 208 -1 N THR A 204 O VAL A 364 SHEET 6 AA3 6 GLN A 213 ILE A 214 -1 O GLN A 213 N LYS A 207 SHEET 1 AA4 5 GLN A 224 SER A 225 0 SHEET 2 AA4 5 ILE A 216 ILE A 221 -1 N ILE A 221 O GLN A 224 SHEET 3 AA4 5 ILE A 296 ARG A 301 -1 O TYR A 299 N LYS A 218 SHEET 4 AA4 5 ARG A 307 ILE A 313 -1 O PHE A 309 N LEU A 300 SHEET 5 AA4 5 SER A 380 SER A 387 -1 O GLU A 381 N THR A 312 SHEET 1 AA5 4 ALA A 238 VAL A 240 0 SHEET 2 AA5 4 LEU A 343 ILE A 345 1 O ILE A 345 N ILE A 239 SHEET 3 AA5 4 LEU A 247 PRO A 250 -1 N ARG A 248 O VAL A 344 SHEET 4 AA5 4 ILE A 336 SER A 339 1 O SER A 337 N LEU A 249 SHEET 1 AA6 3 ALA A 281 TRP A 283 0 SHEET 2 AA6 3 GLU A 330 PHE A 334 -1 O TYR A 332 N ALA A 281 SHEET 3 AA6 3 ILE A 319 MET A 322 -1 N MET A 322 O CYS A 331 SHEET 1 AA7 2 GLU A 373 ILE A 374 0 SHEET 2 AA7 2 ALA A 377 ALA A 378 -1 O ALA A 377 N ILE A 374 SHEET 1 AA8 4 GLN D 162 SER D 166 0 SHEET 2 AA8 4 LEU D 177 SER D 184 -1 O SER D 184 N GLN D 162 SHEET 3 AA8 4 THR D 237 MET D 242 -1 O MET D 242 N LEU D 177 SHEET 4 AA8 4 PHE D 227 ASP D 232 -1 N SER D 230 O TYR D 239 SHEET 1 AA9 6 LEU D 170 VAL D 171 0 SHEET 2 AA9 6 THR D 265 VAL D 269 1 O THR D 268 N VAL D 171 SHEET 3 AA9 6 ALA D 251 SER D 257 -1 N TYR D 253 O THR D 265 SHEET 4 AA9 6 MET D 193 GLN D 198 -1 N VAL D 196 O TYR D 254 SHEET 5 AA9 6 GLU D 205 ILE D 210 -1 O SER D 208 N TRP D 195 SHEET 6 AA9 6 THR D 217 TYR D 219 -1 O THR D 218 N THR D 209 SHEET 1 AB1 4 LEU D 170 VAL D 171 0 SHEET 2 AB1 4 THR D 265 VAL D 269 1 O THR D 268 N VAL D 171 SHEET 3 AB1 4 ALA D 251 SER D 257 -1 N TYR D 253 O THR D 265 SHEET 4 AB1 4 ARG D 260 ARG D 261 -1 O ARG D 260 N SER D 257 SSBOND 1 CYS A 171 CYS A 371 1555 1555 2.03 SSBOND 2 CYS A 230 CYS A 395 1555 1555 2.03 SSBOND 3 CYS A 282 CYS A 331 1555 1555 2.04 CISPEP 1 THR A 38 PRO A 39 0 -3.41 CISPEP 2 LYS A 144 PRO A 145 0 3.81 CISPEP 3 GLY A 384 PRO A 385 0 2.89 SITE 1 AC1 16 GLY A 27 ARG A 28 GLY A 29 TYR A 30 SITE 2 AC1 16 LEU A 46 ASP A 48 VAL A 85 TYR A 87 SITE 3 AC1 16 PHE A 124 ILE A 134 ASP A 241 SER A 242 SITE 4 AC1 16 GLY A 243 THR A 244 THR A 245 ALA A 347 SITE 1 AC2 6 LYS A 79 ASN A 114 GLU A 150 ILE D 192 SITE 2 AC2 6 HOH D 301 HOH D 374 CRYST1 63.542 74.467 109.135 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009163 0.00000