HEADER IMMUNE SYSTEM 10-APR-19 6JTE OBSLTE 17-FEB-21 6JTE 7DY5 TITLE STRUCTURE OF THE COMPLEX OF PEPTIDOGLYCAN RECOGNITION PROTEIN, PGRP-S TITLE 2 WITH COMPOUNDS BOUND AT THE INTERFACE OF A DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN RECOGNITION PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PEPTIDOGLYCAN RECOGNITION PROTEIN SHORT,PGRP-S SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: DROMEDARY; SOURCE 4 ORGANISM_TAXID: 9838 KEYWDS IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.VISWANATHAN,P.SHARMA,S.SHARMA,T.P.SINGH REVDAT 2 17-FEB-21 6JTE 1 OBSLTE REVDAT 1 24-APR-19 6JTE 0 JRNL AUTH V.VISWANATHAN,P.SHARMA,S.SHARMA,T.P.SINGH JRNL TITL STRUCTURE OF THE COMPLEX OF PEPTIDOGLYCAN RECOGNITION JRNL TITL 2 PROTEIN, PGRP-S WITH COMPOUNDS BOUND AT THE INTERFACE OF A JRNL TITL 3 DIMER. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 24571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1278 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -0.45000 REMARK 3 B33 (A**2) : -0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.878 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5407 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4830 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7356 ; 1.432 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11127 ; 1.298 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 660 ; 7.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 325 ;33.995 ;19.508 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;14.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;14.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 661 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6206 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1278 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2656 ; 1.837 ; 2.495 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2651 ; 1.837 ; 2.491 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3309 ; 3.102 ; 3.723 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3309 ; 3.102 ; 3.723 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2751 ; 2.336 ; 2.783 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2752 ; 2.335 ; 2.783 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4048 ; 3.744 ; 4.060 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 26369 ; 7.553 ;47.956 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 26370 ; 7.553 ;47.956 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 171 B 6 171 5501 0.08 0.05 REMARK 3 2 A 6 171 C 6 171 5505 0.08 0.05 REMARK 3 3 A 6 171 D 6 171 5474 0.09 0.05 REMARK 3 4 B 6 171 C 6 171 5507 0.08 0.05 REMARK 3 5 B 6 171 D 6 171 5474 0.09 0.05 REMARK 3 6 C 6 171 D 6 171 5527 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 86.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6J3W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350 0.2M SODIUM POTASSIUM REMARK 280 TARTRATE 20% GLYCEROL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.54250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.67750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.51100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.54250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.67750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.51100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.54250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.67750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.51100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.54250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.67750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.51100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 320 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 394 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 325 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 348 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 GLU B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 GLU C 1 REMARK 465 ASP C 2 REMARK 465 PRO C 3 REMARK 465 PRO C 4 REMARK 465 ALA C 5 REMARK 465 GLU D 1 REMARK 465 ASP D 2 REMARK 465 PRO D 3 REMARK 465 PRO D 4 REMARK 465 ALA D 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 93 -20.09 -148.14 REMARK 500 ALA A 94 18.89 -141.45 REMARK 500 HIS B 93 -19.68 -147.94 REMARK 500 ALA B 94 18.95 -141.29 REMARK 500 HIS C 93 -20.34 -146.55 REMARK 500 ALA C 94 18.75 -142.57 REMARK 500 SER D 8 78.74 -101.09 REMARK 500 HIS D 93 -18.53 -148.16 REMARK 500 ALA D 94 17.15 -141.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 422 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 423 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 292 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH C 411 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH C 412 DISTANCE = 7.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6NA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 204 DBREF 6JTE A 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 6JTE B 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 6JTE C 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 6JTE D 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 SEQRES 1 A 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 A 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 A 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 A 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 A 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 A 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 A 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 A 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 A 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 A 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 A 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 A 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 A 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 A 171 ARG ALA SEQRES 1 B 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 B 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 B 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 B 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 B 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 B 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 B 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 B 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 B 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 B 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 B 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 B 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 B 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 B 171 ARG ALA SEQRES 1 C 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 C 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 C 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 C 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 C 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 C 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 C 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 C 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 C 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 C 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 C 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 C 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 C 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 C 171 ARG ALA SEQRES 1 D 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 D 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 D 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 D 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 D 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 D 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 D 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 D 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 D 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 D 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 D 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 D 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 D 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 D 171 ARG ALA HET TLA A 201 10 HET EDO A 202 4 HET 6NA C 201 8 HET EDO C 202 4 HET EDO C 203 4 HET ACT D 201 4 HET TLA D 202 10 HET GOL D 203 6 HET ACT D 204 4 HETNAM TLA L(+)-TARTARIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM 6NA HEXANOIC ACID HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 TLA 2(C4 H6 O6) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 7 6NA C6 H12 O2 FORMUL 10 ACT 2(C2 H3 O2 1-) FORMUL 12 GOL C3 H8 O3 FORMUL 14 HOH *426(H2 O) HELIX 1 AA1 PRO A 11 ARG A 16 5 6 HELIX 2 AA2 THR A 45 ASN A 63 1 19 HELIX 3 AA3 ALA A 94 ASN A 99 1 6 HELIX 4 AA4 PRO A 117 LEU A 134 1 18 HELIX 5 AA5 ARG A 147 VAL A 149 5 3 HELIX 6 AA6 GLY A 156 GLN A 164 1 9 HELIX 7 AA7 PRO B 11 ARG B 16 5 6 HELIX 8 AA8 THR B 45 ASN B 63 1 19 HELIX 9 AA9 ALA B 94 ASN B 99 1 6 HELIX 10 AB1 PRO B 117 LEU B 134 1 18 HELIX 11 AB2 ARG B 147 VAL B 149 5 3 HELIX 12 AB3 GLY B 156 GLN B 164 1 9 HELIX 13 AB4 PRO C 11 ARG C 16 5 6 HELIX 14 AB5 THR C 45 ASN C 63 1 19 HELIX 15 AB6 ALA C 94 ASN C 99 1 6 HELIX 16 AB7 PRO C 117 LEU C 134 1 18 HELIX 17 AB8 ARG C 147 VAL C 149 5 3 HELIX 18 AB9 GLY C 156 GLN C 164 1 9 HELIX 19 AC1 PRO D 11 ARG D 16 5 6 HELIX 20 AC2 THR D 45 ASN D 63 1 19 HELIX 21 AC3 ALA D 94 ASN D 99 1 6 HELIX 22 AC4 PRO D 117 LEU D 134 1 18 HELIX 23 AC5 ARG D 147 VAL D 149 5 3 HELIX 24 AC6 GLY D 156 GLN D 164 1 9 SHEET 1 AA1 6 ILE A 9 VAL A 10 0 SHEET 2 AA1 6 VAL A 81 GLU A 83 1 O VAL A 81 N VAL A 10 SHEET 3 AA1 6 PHE A 73 ILE A 75 -1 N LEU A 74 O TYR A 82 SHEET 4 AA1 6 SER A 102 PHE A 107 1 O SER A 106 N ILE A 75 SHEET 5 AA1 6 VAL A 30 HIS A 37 1 N VAL A 34 O ILE A 103 SHEET 6 AA1 6 LEU A 137 GLY A 145 1 O LYS A 144 N VAL A 33 SHEET 1 AA2 6 ILE B 9 VAL B 10 0 SHEET 2 AA2 6 VAL B 81 GLU B 83 1 O VAL B 81 N VAL B 10 SHEET 3 AA2 6 PHE B 73 ILE B 75 -1 N LEU B 74 O TYR B 82 SHEET 4 AA2 6 SER B 102 PHE B 107 1 O SER B 106 N ILE B 75 SHEET 5 AA2 6 VAL B 30 HIS B 37 1 N VAL B 34 O ILE B 103 SHEET 6 AA2 6 LEU B 137 GLY B 145 1 O LYS B 144 N VAL B 33 SHEET 1 AA3 5 VAL C 81 GLU C 83 0 SHEET 2 AA3 5 PHE C 73 ILE C 75 -1 N LEU C 74 O TYR C 82 SHEET 3 AA3 5 SER C 102 PHE C 107 1 O SER C 106 N ILE C 75 SHEET 4 AA3 5 VAL C 30 HIS C 37 1 N VAL C 34 O ILE C 103 SHEET 5 AA3 5 LEU C 137 GLY C 145 1 O LYS C 144 N VAL C 33 SHEET 1 AA4 6 ILE D 9 VAL D 10 0 SHEET 2 AA4 6 VAL D 81 GLU D 83 1 O VAL D 81 N VAL D 10 SHEET 3 AA4 6 PHE D 73 ILE D 75 -1 N LEU D 74 O TYR D 82 SHEET 4 AA4 6 SER D 102 PHE D 107 1 O SER D 106 N ILE D 75 SHEET 5 AA4 6 VAL D 30 HIS D 37 1 N VAL D 34 O ILE D 103 SHEET 6 AA4 6 LEU D 137 GLY D 145 1 O LYS D 144 N VAL D 33 SSBOND 1 CYS A 6 CYS A 130 1555 1555 2.08 SSBOND 2 CYS A 22 CYS A 67 1555 1555 2.08 SSBOND 3 CYS A 43 CYS A 49 1555 1555 2.12 SSBOND 4 CYS B 6 CYS B 130 1555 1555 2.07 SSBOND 5 CYS B 22 CYS B 67 1555 1555 2.11 SSBOND 6 CYS B 43 CYS B 49 1555 1555 2.16 SSBOND 7 CYS C 6 CYS C 130 1555 1555 2.05 SSBOND 8 CYS C 22 CYS C 67 1555 1555 2.09 SSBOND 9 CYS C 43 CYS C 49 1555 1555 2.10 SSBOND 10 CYS D 6 CYS D 130 1555 1555 2.05 SSBOND 11 CYS D 22 CYS D 67 1555 1555 2.10 SSBOND 12 CYS D 43 CYS D 49 1555 1555 2.08 CISPEP 1 ARG A 28 PRO A 29 0 -7.68 CISPEP 2 SER A 154 PRO A 155 0 7.78 CISPEP 3 CYS B 6 GLY B 7 0 -14.41 CISPEP 4 ARG B 28 PRO B 29 0 -6.41 CISPEP 5 SER B 154 PRO B 155 0 8.41 CISPEP 6 GLY C 7 SER C 8 0 -9.98 CISPEP 7 ARG C 28 PRO C 29 0 -2.61 CISPEP 8 SER C 154 PRO C 155 0 8.05 CISPEP 9 ARG D 28 PRO D 29 0 -3.03 CISPEP 10 SER D 154 PRO D 155 0 7.09 SITE 1 AC1 7 TRP A 66 CYS A 67 ARG A 85 HOH A 319 SITE 2 AC1 7 HOH A 325 HOH A 344 HOH A 345 SITE 1 AC2 5 SER A 167 HIS A 168 ARG A 170 HOH A 311 SITE 2 AC2 5 THR D 97 SITE 1 AC3 7 LYS C 90 GLY C 95 PRO C 96 ASN C 99 SITE 2 AC3 7 HOH C 332 PRO D 96 GLN D 150 SITE 1 AC4 3 GLN C 150 HOH C 324 ACT D 204 SITE 1 AC5 1 TYR C 32 SITE 1 AC6 2 SER A 139 THR D 97 SITE 1 AC7 14 HIS C 37 ALA C 39 THR C 152 LEU C 153 SITE 2 AC7 14 SER C 154 HIS D 37 ALA D 39 THR D 152 SITE 3 AC7 14 LEU D 153 GOL D 203 HOH D 302 HOH D 317 SITE 4 AC7 14 HOH D 320 HOH D 324 SITE 1 AC8 10 PRO C 151 THR C 152 HIS D 37 THR D 38 SITE 2 AC8 10 ALA D 39 TYR D 71 HIS D 146 TLA D 202 SITE 3 AC8 10 HOH D 302 HOH D 316 SITE 1 AC9 4 EDO C 202 TRP D 66 CYS D 67 ARG D 85 CRYST1 89.085 101.355 163.022 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006134 0.00000