HEADER OXIDOREDUCTASE 14-APR-19 6JUJ TITLE CRYSTAL STRUCTURE OF FORMATE DEHYDROGENASE MUTANT TITLE 2 V198I/C256I/P260S/E261P/S381N/S383F FROM PSEUDOMONAS SP. 101IN TITLE 3 COMPLEX WITH NON-NATURAL COFACTOR NICOTINAMIDE CYTOSINE DINUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FDH,NAD-DEPENDENT FORMATE DEHYDROGENASE; COMPND 5 EC: 1.17.1.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. 101; SOURCE 3 ORGANISM_COMMON: ACHROMOBACTER PARVULUS T1; SOURCE 4 ORGANISM_TAXID: 33067; SOURCE 5 STRAIN: 101; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS FORMATE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.FENG,X.GUO,S.XUE,Z.ZHAO REVDAT 4 22-NOV-23 6JUJ 1 REMARK REVDAT 3 30-DEC-20 6JUJ 1 JRNL REVDAT 2 02-DEC-20 6JUJ 1 JRNL REVDAT 1 13-MAY-20 6JUJ 0 JRNL AUTH X.GUO,X.WANG,Y.LIU,Q.LI,J.WANG,W.LIU,Z.K.ZHAO JRNL TITL STRUCTURE-GUIDED DESIGN OF FORMATE DEHYDROGENASE FOR JRNL TITL 2 REGENERATION OF A NON-NATURAL REDOX COFACTOR. JRNL REF CHEMISTRY V. 26 16611 2020 JRNL REFN ISSN 0947-6539 JRNL PMID 32815230 JRNL DOI 10.1002/CHEM.202003102 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 3 NUMBER OF REFLECTIONS : 32899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6703 - 4.9969 0.88 2950 161 0.1557 0.2002 REMARK 3 2 4.9969 - 3.9668 0.90 2950 158 0.1302 0.1619 REMARK 3 3 3.9668 - 3.4655 0.92 2989 156 0.1553 0.1858 REMARK 3 4 3.4655 - 3.1487 0.93 2967 164 0.1824 0.2462 REMARK 3 5 3.1487 - 2.9230 0.90 2886 152 0.1986 0.2595 REMARK 3 6 2.9230 - 2.7507 0.88 2809 151 0.1986 0.2375 REMARK 3 7 2.7507 - 2.6130 0.83 2648 154 0.1972 0.2452 REMARK 3 8 2.6130 - 2.4992 0.77 2464 124 0.1923 0.2424 REMARK 3 9 2.4992 - 2.4030 0.73 2330 112 0.2019 0.2710 REMARK 3 10 2.4030 - 2.3201 0.70 2217 138 0.2018 0.2702 REMARK 3 11 2.3201 - 2.2475 0.66 2085 106 0.2059 0.3047 REMARK 3 12 2.2475 - 2.1833 0.61 1940 88 0.2133 0.2943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6154 REMARK 3 ANGLE : 1.175 8395 REMARK 3 CHIRALITY : 0.067 936 REMARK 3 PLANARITY : 0.007 1075 REMARK 3 DIHEDRAL : 6.683 3618 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.10820 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2GO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5, 30% W/V POLYETHYLENE GLYCOL REMARK 280 8,000., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.01300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.03900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.01300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.03900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 383 REMARK 465 LYS A 384 REMARK 465 GLY A 385 REMARK 465 ASN A 386 REMARK 465 ALA A 387 REMARK 465 THR A 388 REMARK 465 GLY A 389 REMARK 465 GLY A 390 REMARK 465 SER A 391 REMARK 465 GLU A 392 REMARK 465 GLU A 393 REMARK 465 ALA A 394 REMARK 465 ALA A 395 REMARK 465 LYS A 396 REMARK 465 PHE A 397 REMARK 465 LYS A 398 REMARK 465 LYS A 399 REMARK 465 ALA A 400 REMARK 465 VAL A 401 REMARK 465 MET B 1 REMARK 465 GLY B 376 REMARK 465 THR B 377 REMARK 465 GLY B 378 REMARK 465 ALA B 379 REMARK 465 HIS B 380 REMARK 465 ASN B 381 REMARK 465 TYR B 382 REMARK 465 PHE B 383 REMARK 465 LYS B 384 REMARK 465 GLY B 385 REMARK 465 ASN B 386 REMARK 465 ALA B 387 REMARK 465 THR B 388 REMARK 465 GLY B 389 REMARK 465 GLY B 390 REMARK 465 SER B 391 REMARK 465 GLU B 392 REMARK 465 GLU B 393 REMARK 465 ALA B 394 REMARK 465 ALA B 395 REMARK 465 LYS B 396 REMARK 465 PHE B 397 REMARK 465 LYS B 398 REMARK 465 LYS B 399 REMARK 465 ALA B 400 REMARK 465 VAL B 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 639 O HOH A 767 1.91 REMARK 500 N ALA A 199 O HOH A 601 1.94 REMARK 500 OE2 GLU A 171 O HOH A 602 1.94 REMARK 500 O HOH B 773 O HOH B 777 1.94 REMARK 500 OD2 ASP B 24 O HOH B 601 1.96 REMARK 500 O HOH A 748 O HOH A 776 1.97 REMARK 500 O HOH B 676 O HOH B 757 2.05 REMARK 500 O HOH A 641 O HOH A 751 2.06 REMARK 500 O HOH B 622 O HOH B 716 2.07 REMARK 500 O LEU B 374 O HOH B 602 2.10 REMARK 500 O HOH A 742 O HOH A 754 2.10 REMARK 500 O ARG A 360 O HOH A 603 2.12 REMARK 500 O HOH A 666 O HOH A 696 2.13 REMARK 500 OD1 ASP A 292 O HOH A 604 2.13 REMARK 500 NZ LYS A 116 O HOH A 605 2.13 REMARK 500 O PRO A 40 O HOH A 606 2.13 REMARK 500 O HOH A 703 O HOH A 753 2.14 REMARK 500 O HOH A 737 O HOH A 775 2.14 REMARK 500 O ALA A 102 O HOH A 607 2.15 REMARK 500 O HOH B 759 O HOH B 762 2.16 REMARK 500 O GLY B 277 O HOH B 603 2.17 REMARK 500 NE2 GLN B 370 O HOH B 604 2.18 REMARK 500 O03 A7R A 501 O HOH A 608 2.18 REMARK 500 O HOH A 729 O HOH A 749 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 634 O HOH A 686 1545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 21.21 49.67 REMARK 500 TRP A 100 75.69 -156.75 REMARK 500 TYR A 145 -1.90 77.36 REMARK 500 TRP A 178 -73.79 -141.20 REMARK 500 ALA A 284 -84.78 -88.31 REMARK 500 ILE A 334 -12.80 -142.05 REMARK 500 LEU B 58 21.70 49.90 REMARK 500 TRP B 100 72.62 -150.61 REMARK 500 SER B 125 41.43 -95.58 REMARK 500 TYR B 145 -0.43 77.89 REMARK 500 TRP B 178 -77.14 -140.95 REMARK 500 ALA B 284 -88.02 -86.12 REMARK 500 ILE B 334 -12.77 -142.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A7R A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A7R B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 DBREF 6JUJ A 1 401 UNP P33160 FDH_PSESR 1 401 DBREF 6JUJ B 1 401 UNP P33160 FDH_PSESR 1 401 SEQADV 6JUJ ILE A 198 UNP P33160 VAL 198 ENGINEERED MUTATION SEQADV 6JUJ ILE A 256 UNP P33160 CYS 256 ENGINEERED MUTATION SEQADV 6JUJ SER A 260 UNP P33160 PRO 260 ENGINEERED MUTATION SEQADV 6JUJ PRO A 261 UNP P33160 GLU 261 ENGINEERED MUTATION SEQADV 6JUJ ASN A 381 UNP P33160 SER 381 ENGINEERED MUTATION SEQADV 6JUJ PHE A 383 UNP P33160 SER 383 ENGINEERED MUTATION SEQADV 6JUJ ILE B 198 UNP P33160 VAL 198 ENGINEERED MUTATION SEQADV 6JUJ ILE B 256 UNP P33160 CYS 256 ENGINEERED MUTATION SEQADV 6JUJ SER B 260 UNP P33160 PRO 260 ENGINEERED MUTATION SEQADV 6JUJ PRO B 261 UNP P33160 GLU 261 ENGINEERED MUTATION SEQADV 6JUJ ASN B 381 UNP P33160 SER 381 ENGINEERED MUTATION SEQADV 6JUJ PHE B 383 UNP P33160 SER 383 ENGINEERED MUTATION SEQRES 1 A 401 MET ALA LYS VAL LEU CYS VAL LEU TYR ASP ASP PRO VAL SEQRES 2 A 401 ASP GLY TYR PRO LYS THR TYR ALA ARG ASP ASP LEU PRO SEQRES 3 A 401 LYS ILE ASP HIS TYR PRO GLY GLY GLN THR LEU PRO THR SEQRES 4 A 401 PRO LYS ALA ILE ASP PHE THR PRO GLY GLN LEU LEU GLY SEQRES 5 A 401 SER VAL SER GLY GLU LEU GLY LEU ARG LYS TYR LEU GLU SEQRES 6 A 401 SER ASN GLY HIS THR LEU VAL VAL THR SER ASP LYS ASP SEQRES 7 A 401 GLY PRO ASP SER VAL PHE GLU ARG GLU LEU VAL ASP ALA SEQRES 8 A 401 ASP VAL VAL ILE SER GLN PRO PHE TRP PRO ALA TYR LEU SEQRES 9 A 401 THR PRO GLU ARG ILE ALA LYS ALA LYS ASN LEU LYS LEU SEQRES 10 A 401 ALA LEU THR ALA GLY ILE GLY SER ASP HIS VAL ASP LEU SEQRES 11 A 401 GLN SER ALA ILE ASP ARG ASN VAL THR VAL ALA GLU VAL SEQRES 12 A 401 THR TYR CYS ASN SER ILE SER VAL ALA GLU HIS VAL VAL SEQRES 13 A 401 MET MET ILE LEU SER LEU VAL ARG ASN TYR LEU PRO SER SEQRES 14 A 401 HIS GLU TRP ALA ARG LYS GLY GLY TRP ASN ILE ALA ASP SEQRES 15 A 401 CYS VAL SER HIS ALA TYR ASP LEU GLU ALA MET HIS VAL SEQRES 16 A 401 GLY THR ILE ALA ALA GLY ARG ILE GLY LEU ALA VAL LEU SEQRES 17 A 401 ARG ARG LEU ALA PRO PHE ASP VAL HIS LEU HIS TYR THR SEQRES 18 A 401 ASP ARG HIS ARG LEU PRO GLU SER VAL GLU LYS GLU LEU SEQRES 19 A 401 ASN LEU THR TRP HIS ALA THR ARG GLU ASP MET TYR PRO SEQRES 20 A 401 VAL CYS ASP VAL VAL THR LEU ASN ILE PRO LEU HIS SER SEQRES 21 A 401 PRO THR GLU HIS MET ILE ASN ASP GLU THR LEU LYS LEU SEQRES 22 A 401 PHE LYS ARG GLY ALA TYR ILE VAL ASN THR ALA ARG GLY SEQRES 23 A 401 LYS LEU CYS ASP ARG ASP ALA VAL ALA ARG ALA LEU GLU SEQRES 24 A 401 SER GLY ARG LEU ALA GLY TYR ALA GLY ASP VAL TRP PHE SEQRES 25 A 401 PRO GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG THR MET SEQRES 26 A 401 PRO TYR ASN GLY MET THR PRO HIS ILE SER GLY THR THR SEQRES 27 A 401 LEU THR ALA GLN ALA ARG TYR ALA ALA GLY THR ARG GLU SEQRES 28 A 401 ILE LEU GLU CYS PHE PHE GLU GLY ARG PRO ILE ARG ASP SEQRES 29 A 401 GLU TYR LEU ILE VAL GLN GLY GLY ALA LEU ALA GLY THR SEQRES 30 A 401 GLY ALA HIS ASN TYR PHE LYS GLY ASN ALA THR GLY GLY SEQRES 31 A 401 SER GLU GLU ALA ALA LYS PHE LYS LYS ALA VAL SEQRES 1 B 401 MET ALA LYS VAL LEU CYS VAL LEU TYR ASP ASP PRO VAL SEQRES 2 B 401 ASP GLY TYR PRO LYS THR TYR ALA ARG ASP ASP LEU PRO SEQRES 3 B 401 LYS ILE ASP HIS TYR PRO GLY GLY GLN THR LEU PRO THR SEQRES 4 B 401 PRO LYS ALA ILE ASP PHE THR PRO GLY GLN LEU LEU GLY SEQRES 5 B 401 SER VAL SER GLY GLU LEU GLY LEU ARG LYS TYR LEU GLU SEQRES 6 B 401 SER ASN GLY HIS THR LEU VAL VAL THR SER ASP LYS ASP SEQRES 7 B 401 GLY PRO ASP SER VAL PHE GLU ARG GLU LEU VAL ASP ALA SEQRES 8 B 401 ASP VAL VAL ILE SER GLN PRO PHE TRP PRO ALA TYR LEU SEQRES 9 B 401 THR PRO GLU ARG ILE ALA LYS ALA LYS ASN LEU LYS LEU SEQRES 10 B 401 ALA LEU THR ALA GLY ILE GLY SER ASP HIS VAL ASP LEU SEQRES 11 B 401 GLN SER ALA ILE ASP ARG ASN VAL THR VAL ALA GLU VAL SEQRES 12 B 401 THR TYR CYS ASN SER ILE SER VAL ALA GLU HIS VAL VAL SEQRES 13 B 401 MET MET ILE LEU SER LEU VAL ARG ASN TYR LEU PRO SER SEQRES 14 B 401 HIS GLU TRP ALA ARG LYS GLY GLY TRP ASN ILE ALA ASP SEQRES 15 B 401 CYS VAL SER HIS ALA TYR ASP LEU GLU ALA MET HIS VAL SEQRES 16 B 401 GLY THR ILE ALA ALA GLY ARG ILE GLY LEU ALA VAL LEU SEQRES 17 B 401 ARG ARG LEU ALA PRO PHE ASP VAL HIS LEU HIS TYR THR SEQRES 18 B 401 ASP ARG HIS ARG LEU PRO GLU SER VAL GLU LYS GLU LEU SEQRES 19 B 401 ASN LEU THR TRP HIS ALA THR ARG GLU ASP MET TYR PRO SEQRES 20 B 401 VAL CYS ASP VAL VAL THR LEU ASN ILE PRO LEU HIS SER SEQRES 21 B 401 PRO THR GLU HIS MET ILE ASN ASP GLU THR LEU LYS LEU SEQRES 22 B 401 PHE LYS ARG GLY ALA TYR ILE VAL ASN THR ALA ARG GLY SEQRES 23 B 401 LYS LEU CYS ASP ARG ASP ALA VAL ALA ARG ALA LEU GLU SEQRES 24 B 401 SER GLY ARG LEU ALA GLY TYR ALA GLY ASP VAL TRP PHE SEQRES 25 B 401 PRO GLN PRO ALA PRO LYS ASP HIS PRO TRP ARG THR MET SEQRES 26 B 401 PRO TYR ASN GLY MET THR PRO HIS ILE SER GLY THR THR SEQRES 27 B 401 LEU THR ALA GLN ALA ARG TYR ALA ALA GLY THR ARG GLU SEQRES 28 B 401 ILE LEU GLU CYS PHE PHE GLU GLY ARG PRO ILE ARG ASP SEQRES 29 B 401 GLU TYR LEU ILE VAL GLN GLY GLY ALA LEU ALA GLY THR SEQRES 30 B 401 GLY ALA HIS ASN TYR PHE LYS GLY ASN ALA THR GLY GLY SEQRES 31 B 401 SER GLU GLU ALA ALA LYS PHE LYS LYS ALA VAL HET A7R A 501 42 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET A7R B 501 42 HET GOL B 502 6 HET GOL B 503 6 HETNAM A7R [[(2S,3S,4R,5S)-5-(3-AMINOCARBONYLPYRIDIN-1-IUM-1-YL)- HETNAM 2 A7R 3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 A7R PHOSPHORYL] [(2S,3S,4R,5S)-5-(4-AZANYL-2- HETNAM 4 A7R OXIDANYLIDENE-PYRIMIDIN-1-YL)-3,4-BIS(OXIDANYL)OXOLAN- HETNAM 5 A7R 2-YL]METHYL HYDROGEN PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 A7R 2(C20 H28 N5 O15 P2 1+) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 10 HOH *356(H2 O) HELIX 1 AA1 GLY A 56 GLY A 59 5 4 HELIX 2 AA2 LEU A 60 SER A 66 1 7 HELIX 3 AA3 SER A 82 VAL A 89 1 8 HELIX 4 AA4 THR A 105 ALA A 112 1 8 HELIX 5 AA5 ASP A 129 ARG A 136 1 8 HELIX 6 AA6 ASN A 147 ASN A 165 1 19 HELIX 7 AA7 ASN A 165 LYS A 175 1 11 HELIX 8 AA8 ASN A 179 SER A 185 1 7 HELIX 9 AA9 GLY A 201 ALA A 212 1 12 HELIX 10 AB1 PRO A 213 ASP A 215 5 3 HELIX 11 AB2 PRO A 227 ASN A 235 1 9 HELIX 12 AB3 THR A 241 TYR A 246 1 6 HELIX 13 AB4 PRO A 247 CYS A 249 5 3 HELIX 14 AB5 HIS A 259 GLU A 263 5 5 HELIX 15 AB6 ASN A 267 LYS A 272 1 6 HELIX 16 AB7 ARG A 285 CYS A 289 5 5 HELIX 17 AB8 ASP A 290 SER A 300 1 11 HELIX 18 AB9 HIS A 320 THR A 324 5 5 HELIX 19 AC1 ILE A 334 THR A 337 5 4 HELIX 20 AC2 THR A 338 GLY A 359 1 22 HELIX 21 AC3 ARG A 363 GLU A 365 5 3 HELIX 22 AC4 ALA A 375 TYR A 382 1 8 HELIX 23 AC5 GLY B 56 GLY B 59 5 4 HELIX 24 AC6 LEU B 60 SER B 66 1 7 HELIX 25 AC7 SER B 82 VAL B 89 1 8 HELIX 26 AC8 THR B 105 ALA B 112 1 8 HELIX 27 AC9 ASP B 129 ARG B 136 1 8 HELIX 28 AD1 ASN B 147 ARG B 164 1 18 HELIX 29 AD2 ASN B 165 LYS B 175 1 11 HELIX 30 AD3 ASN B 179 SER B 185 1 7 HELIX 31 AD4 GLY B 201 ALA B 212 1 12 HELIX 32 AD5 PRO B 213 ASP B 215 5 3 HELIX 33 AD6 PRO B 227 ASN B 235 1 9 HELIX 34 AD7 THR B 241 TYR B 246 1 6 HELIX 35 AD8 PRO B 247 CYS B 249 5 3 HELIX 36 AD9 HIS B 259 GLU B 263 5 5 HELIX 37 AE1 GLU B 269 PHE B 274 5 6 HELIX 38 AE2 ARG B 285 CYS B 289 5 5 HELIX 39 AE3 ASP B 290 SER B 300 1 11 HELIX 40 AE4 HIS B 320 THR B 324 5 5 HELIX 41 AE5 ILE B 334 THR B 337 5 4 HELIX 42 AE6 THR B 338 GLY B 359 1 22 HELIX 43 AE7 ARG B 363 GLU B 365 5 3 SHEET 1 AA1 7 THR A 70 THR A 74 0 SHEET 2 AA1 7 LYS A 3 VAL A 7 1 N VAL A 4 O THR A 70 SHEET 3 AA1 7 VAL A 93 SER A 96 1 O VAL A 93 N LEU A 5 SHEET 4 AA1 7 LEU A 117 THR A 120 1 O LEU A 119 N VAL A 94 SHEET 5 AA1 7 THR A 139 GLU A 142 1 O THR A 139 N ALA A 118 SHEET 6 AA1 7 LEU A 367 GLN A 370 -1 O ILE A 368 N VAL A 140 SHEET 7 AA1 7 ALA A 373 LEU A 374 -1 O ALA A 373 N GLN A 370 SHEET 1 AA2 6 THR A 237 TRP A 238 0 SHEET 2 AA2 6 HIS A 217 TYR A 220 1 N LEU A 218 O THR A 237 SHEET 3 AA2 6 HIS A 194 THR A 197 1 N VAL A 195 O HIS A 219 SHEET 4 AA2 6 VAL A 251 LEU A 254 1 O VAL A 251 N GLY A 196 SHEET 5 AA2 6 ALA A 278 ASN A 282 1 O VAL A 281 N LEU A 254 SHEET 6 AA2 6 LEU A 303 ALA A 307 1 O ALA A 304 N ALA A 278 SHEET 1 AA3 7 THR B 70 THR B 74 0 SHEET 2 AA3 7 LYS B 3 VAL B 7 1 N VAL B 4 O THR B 70 SHEET 3 AA3 7 VAL B 93 SER B 96 1 O VAL B 93 N LEU B 5 SHEET 4 AA3 7 LEU B 117 THR B 120 1 O LEU B 119 N VAL B 94 SHEET 5 AA3 7 THR B 139 GLU B 142 1 O THR B 139 N ALA B 118 SHEET 6 AA3 7 LEU B 367 GLN B 370 -1 O ILE B 368 N VAL B 140 SHEET 7 AA3 7 ALA B 373 LEU B 374 -1 O ALA B 373 N GLN B 370 SHEET 1 AA4 6 LEU B 236 TRP B 238 0 SHEET 2 AA4 6 HIS B 217 TYR B 220 1 N LEU B 218 O THR B 237 SHEET 3 AA4 6 HIS B 194 THR B 197 1 N VAL B 195 O HIS B 217 SHEET 4 AA4 6 VAL B 251 LEU B 254 1 O VAL B 251 N GLY B 196 SHEET 5 AA4 6 ALA B 278 ASN B 282 1 O TYR B 279 N VAL B 252 SHEET 6 AA4 6 LEU B 303 GLY B 308 1 O ALA B 307 N ASN B 282 CISPEP 1 PHE A 312 PRO A 313 0 -4.62 CISPEP 2 GLN A 314 PRO A 315 0 -2.31 CISPEP 3 PHE B 312 PRO B 313 0 -5.84 CISPEP 4 GLN B 314 PRO B 315 0 -3.82 SITE 1 AC1 24 PHE A 99 ASN A 147 VAL A 151 ALA A 199 SITE 2 AC1 24 GLY A 201 ARG A 202 ILE A 203 ASP A 222 SITE 3 AC1 24 ARG A 223 ASN A 255 ILE A 256 PRO A 257 SITE 4 AC1 24 HIS A 259 THR A 283 ALA A 284 ASP A 309 SITE 5 AC1 24 VAL A 310 HIS A 333 SER A 335 GLY A 336 SITE 6 AC1 24 HOH A 608 HOH A 622 HOH A 630 HOH A 694 SITE 1 AC2 2 PRO A 326 TYR A 327 SITE 1 AC3 6 ARG A 86 LEU A 298 GLU A 299 GLY A 301 SITE 2 AC3 6 TYR A 327 HOH A 738 SITE 1 AC4 5 GLY A 124 SER A 125 ASP A 126 GLU A 142 SITE 2 AC4 5 ASN A 381 SITE 1 AC5 23 PHE B 99 ASN B 147 VAL B 151 ALA B 199 SITE 2 AC5 23 GLY B 201 ARG B 202 ILE B 203 ASP B 222 SITE 3 AC5 23 ARG B 223 ASN B 255 ILE B 256 PRO B 257 SITE 4 AC5 23 HIS B 259 THR B 283 ALA B 284 ASP B 309 SITE 5 AC5 23 HIS B 333 SER B 335 GLY B 336 HOH B 661 SITE 6 AC5 23 HOH B 679 HOH B 683 HOH B 731 SITE 1 AC6 4 GLN B 131 ARG B 360 PRO B 361 ARG B 363 SITE 1 AC7 6 ARG B 22 ASP B 23 GLY B 48 GLN B 49 SITE 2 AC7 6 HOH B 613 HOH B 616 CRYST1 146.026 54.078 117.909 90.00 122.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006848 0.000000 0.004383 0.00000 SCALE2 0.000000 0.018492 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010069 0.00000