data_6JXM # _entry.id 6JXM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6JXM pdb_00006jxm 10.2210/pdb6jxm/pdb WWPDB D_1300011952 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6JXM _pdbx_database_status.recvd_initial_deposition_date 2019-04-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cai, R.' 1 ? 'Price, I.R.' 2 ? 'Ding, F.' 3 ? 'Wu, F.' 4 ? 'Chen, T.' 5 ? 'Zhang, Y.' 6 ? 'Liu, G.' 7 ? 'Jardine, P.J.' 8 ? 'Lu, C.' 9 ? 'Ke, A.' 10 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 47 _citation.language ? _citation.page_first 9818 _citation.page_last 9828 _citation.title 'ATP/ADP modulates gp16-pRNA conformational change in the Phi29 DNA packaging motor.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkz692 _citation.pdbx_database_id_PubMed 31396619 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cai, R.' 1 ? primary 'Price, I.R.' 2 ? primary 'Ding, F.' 3 ? primary 'Wu, F.' 4 ? primary 'Chen, T.' 5 ? primary 'Zhang, Y.' 6 ? primary 'Liu, G.' 7 ? primary 'Jardine, P.J.' 8 ? primary 'Lu, C.' 9 ? primary 'Ke, A.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6JXM _cell.details ? _cell.formula_units_Z ? _cell.length_a 120.178 _cell.length_a_esd ? _cell.length_b 120.178 _cell.length_b_esd ? _cell.length_c 187.494 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (97-mer)' 31377.650 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 7 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 15 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name pRNA # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCGGAAGUAGUUCAGUGGUAGAACACCCGACAGACGAAGCGCUAAAACGUGGGAUUCUGUCGGGGGGUCGCGGGUUCGAG UCCCGUCUUCCGCUCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGGAAGUAGUUCAGUGGUAGAACACCCGACAGACGAAGCGCUAAAACGUGGGAUUCUGUCGGGGGGUCGCGGGUUCGAG UCCCGUCUUCCGCUCCA ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 U n 1 20 A n 1 21 G n 1 22 A n 1 23 A n 1 24 C n 1 25 A n 1 26 C n 1 27 C n 1 28 C n 1 29 G n 1 30 A n 1 31 C n 1 32 A n 1 33 G n 1 34 A n 1 35 C n 1 36 G n 1 37 A n 1 38 A n 1 39 G n 1 40 C n 1 41 G n 1 42 C n 1 43 U n 1 44 A n 1 45 A n 1 46 A n 1 47 A n 1 48 C n 1 49 G n 1 50 U n 1 51 G n 1 52 G n 1 53 G n 1 54 A n 1 55 U n 1 56 U n 1 57 C n 1 58 U n 1 59 G n 1 60 U n 1 61 C n 1 62 G n 1 63 G n 1 64 G n 1 65 G n 1 66 G n 1 67 G n 1 68 U n 1 69 C n 1 70 G n 1 71 C n 1 72 G n 1 73 G n 1 74 G n 1 75 U n 1 76 U n 1 77 C n 1 78 G n 1 79 A n 1 80 G n 1 81 U n 1 82 C n 1 83 C n 1 84 C n 1 85 G n 1 86 U n 1 87 C n 1 88 U n 1 89 U n 1 90 C n 1 91 C n 1 92 G n 1 93 C n 1 94 U n 1 95 C n 1 96 C n 1 97 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 97 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus virus phi29' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10756 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6JXM _struct_ref.pdbx_db_accession 6JXM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6JXM _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6JXM _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 97 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 97 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6JXM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 5.39 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 77.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.12 mM spermine, 5 mM cobalt hexamine, 10%(+/-)-2-methyl-2,4-pentanediol (MPD), 62 mM potassium chloride, 30 mM barium chloride, 40 mM pH 6 Na cacodylate ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-02-17 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.606 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.606 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6JXM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.32 _reflns.d_resolution_low 101.18 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10506 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.041 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.32 _reflns_shell.d_res_low 3.59 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.067 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.029 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.28 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.28 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.55 _refine.B_iso_max ? _refine.B_iso_mean 152.093 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.923 _refine.correlation_coeff_Fo_to_Fc_free 0.932 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6JXM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.32 _refine.ls_d_res_low 101.18 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9296 _refine.ls_number_reflns_R_free 1034 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.22 _refine.ls_percent_reflns_R_free 10.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.22702 _refine.ls_R_factor_R_free 0.26515 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.22291 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4MGM _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 1.178 _refine.pdbx_overall_ESU_R_Free 0.436 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 25.778 _refine.overall_SU_ML 0.373 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2077 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2099 _refine_hist.d_res_high 3.32 _refine_hist.d_res_low 101.18 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 0.011 2323 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 951 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.209 1.274 3619 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.561 3.000 2309 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.085 0.200 388 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 1168 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.003 0.020 525 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 14.001 16.105 2322 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 14.000 16.109 2323 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 21.038 24.169 3619 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 22.941 ? 3184 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 22.938 ? 3185 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.321 _refine_ls_shell.d_res_low 3.407 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 64 _refine_ls_shell.number_reflns_R_work 570 _refine_ls_shell.percent_reflns_obs 83.31 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.392 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.404 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6JXM _struct.title 'Crystal Structure of phi29 pRNA domain II' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6JXM _struct_keywords.text 'phi29 bacteriophage, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 3 ? V N N 3 ? W N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 7 O6 ? ? ? 1_555 K BA . BA ? ? B G 7 B BA 110 1_555 ? ? ? ? ? ? ? 3.323 ? ? metalc2 metalc ? ? A A 9 OP1 ? ? ? 1_555 P BA . BA ? ? B A 9 B BA 115 1_555 ? ? ? ? ? ? ? 3.328 ? ? metalc3 metalc ? ? A A 9 OP2 ? ? ? 1_555 P BA . BA ? ? B A 9 B BA 115 1_555 ? ? ? ? ? ? ? 2.786 ? ? metalc4 metalc ? ? A A 9 OP1 ? ? ? 1_555 U BA . BA ? ? B A 9 B BA 120 1_555 ? ? ? ? ? ? ? 3.242 ? ? metalc5 metalc ? ? A U 16 O2 ? ? ? 1_555 V BA . BA ? ? B U 16 B BA 121 2_655 ? ? ? ? ? ? ? 3.138 ? ? metalc6 metalc ? ? A U 16 O4 ? ? ? 1_555 V BA . BA ? ? B U 16 B BA 121 2_655 ? ? ? ? ? ? ? 3.399 ? ? metalc7 metalc ? ? A A 37 OP1 ? ? ? 1_555 S BA . BA ? ? B A 37 B BA 118 1_555 ? ? ? ? ? ? ? 2.972 ? ? metalc8 metalc ? ? A G 41 OP2 ? ? ? 1_555 D MG . MG ? ? B G 41 B MG 103 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc9 metalc ? ? A C 42 "O4'" ? ? ? 1_555 D MG . MG ? ? B C 42 B MG 103 1_555 ? ? ? ? ? ? ? 2.837 ? ? metalc10 metalc ? ? A A 44 OP1 ? ? ? 1_555 Q BA . BA ? ? B A 44 B BA 116 1_555 ? ? ? ? ? ? ? 3.419 ? ? metalc11 metalc ? ? A U 50 O4 ? ? ? 1_555 I BA . BA ? ? B U 50 B BA 108 1_555 ? ? ? ? ? ? ? 2.864 ? ? metalc12 metalc ? ? A G 51 O6 ? ? ? 1_555 I BA . BA ? ? B G 51 B BA 108 1_555 ? ? ? ? ? ? ? 2.977 ? ? metalc13 metalc ? ? A G 66 O6 ? ? ? 1_555 J BA . BA ? ? B G 66 B BA 109 1_555 ? ? ? ? ? ? ? 3.401 ? ? metalc14 metalc ? ? A G 70 O6 ? ? ? 1_555 K BA . BA ? ? B G 70 B BA 110 1_555 ? ? ? ? ? ? ? 3.327 ? ? metalc15 metalc ? ? A G 74 O6 ? ? ? 1_555 M BA . BA ? ? B G 74 B BA 112 1_555 ? ? ? ? ? ? ? 3.260 ? ? metalc16 metalc ? ? A U 75 O4 ? ? ? 1_555 N BA . BA ? ? B U 75 B BA 113 1_555 ? ? ? ? ? ? ? 3.203 ? ? metalc17 metalc ? ? A U 76 O4 ? ? ? 1_555 L BA . BA ? ? B U 76 B BA 111 1_555 ? ? ? ? ? ? ? 3.200 ? ? metalc18 metalc ? ? A U 76 O4 ? ? ? 1_555 N BA . BA ? ? B U 76 B BA 113 1_555 ? ? ? ? ? ? ? 3.119 ? ? metalc19 metalc ? ? A A 79 "O2'" ? ? ? 1_555 M BA . BA ? ? B A 79 B BA 112 1_555 ? ? ? ? ? ? ? 3.369 ? ? metalc20 metalc ? ? A A 79 OP2 ? ? ? 1_555 N BA . BA ? ? B A 79 B BA 113 1_555 ? ? ? ? ? ? ? 2.999 ? ? metalc21 metalc ? ? A G 85 O6 ? ? ? 1_555 K BA . BA ? ? B G 85 B BA 110 1_555 ? ? ? ? ? ? ? 3.333 ? ? metalc22 metalc ? ? A U 86 O4 ? ? ? 1_555 K BA . BA ? ? B U 86 B BA 110 1_555 ? ? ? ? ? ? ? 3.317 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 92 N1 ? ? B C 2 B G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 92 O6 ? ? B C 2 B G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 92 N2 ? ? B C 2 B G 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 91 N4 ? ? B G 3 B C 91 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog5 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 90 N3 ? ? B G 4 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 90 O2 ? ? B G 4 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 90 N4 ? ? B G 4 B C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 89 N3 ? ? B A 5 B U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 89 O4 ? ? B A 5 B U 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 88 N3 ? ? B A 6 B U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 88 O4 ? ? B A 6 B U 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 87 N3 ? ? B G 7 B C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 87 O2 ? ? B G 7 B C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 87 N4 ? ? B G 7 B C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? B U 8 B A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog17 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 22 N7 ? ? B A 9 B A 22 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog18 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 22 N6 ? ? B A 9 B A 22 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 24 N3 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 24 O2 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 24 N4 ? ? B G 10 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 66 N2 ? ? B G 10 B G 66 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 23 N1 ? ? B U 11 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 23 N6 ? ? B U 11 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 22 N1 ? ? B U 12 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 22 N6 ? ? B U 12 B A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 21 N1 ? ? B C 13 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 21 O6 ? ? B C 13 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 21 N2 ? ? B C 13 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 20 N3 ? ? B A 14 B A 20 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 69 O2 ? ? B G 15 B C 69 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog32 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 69 N3 ? ? B G 15 B C 69 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog33 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 76 O2 ? ? B G 17 B U 76 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog34 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 77 N3 ? ? B G 18 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 77 O2 ? ? B G 18 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 77 N4 ? ? B G 18 B C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 21 N7 ? ? ? 1_555 A G 67 N1 ? ? B G 21 B G 67 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog38 hydrog ? ? A G 21 O6 ? ? ? 1_555 A G 67 N2 ? ? B G 21 B G 67 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog39 hydrog ? ? A A 25 N1 ? ? ? 1_555 A G 65 N1 ? ? B A 25 B G 65 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog40 hydrog ? ? A A 25 N6 ? ? ? 1_555 A G 65 O6 ? ? B A 25 B G 65 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog41 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 64 N1 ? ? B C 26 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 26 N4 ? ? ? 1_555 A G 64 O6 ? ? B C 26 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 26 O2 ? ? ? 1_555 A G 64 N2 ? ? B C 26 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 63 N1 ? ? B C 27 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 63 O6 ? ? B C 27 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 63 N2 ? ? B C 27 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 62 N1 ? ? B C 28 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 62 O6 ? ? B C 28 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 62 N2 ? ? B C 28 B G 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 61 N3 ? ? B G 29 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 61 O2 ? ? B G 29 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 61 N4 ? ? B G 29 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 60 N3 ? ? B A 30 B U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 60 O4 ? ? B A 30 B U 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 31 N3 ? ? ? 1_555 A G 59 N1 ? ? B C 31 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 31 N4 ? ? ? 1_555 A G 59 O6 ? ? B C 31 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 59 N2 ? ? B C 31 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 32 N1 ? ? ? 1_555 A U 58 N3 ? ? B A 32 B U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 32 N6 ? ? ? 1_555 A U 58 O4 ? ? B A 32 B U 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 57 N3 ? ? B G 33 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 57 O2 ? ? B G 33 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 57 N4 ? ? B G 33 B C 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 34 N1 ? ? ? 1_555 A U 56 N3 ? ? B A 34 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 34 N6 ? ? ? 1_555 A U 56 O4 ? ? B A 34 B U 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 35 N3 ? ? ? 1_555 A G 53 N1 ? ? B C 35 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 35 N4 ? ? ? 1_555 A G 53 O6 ? ? B C 35 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 35 O2 ? ? ? 1_555 A G 53 N2 ? ? B C 35 B G 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 38 N6 ? ? ? 1_555 A G 52 N3 ? ? B A 38 B G 52 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog69 hydrog ? ? A A 38 N7 ? ? ? 1_555 A G 52 N2 ? ? B A 38 B G 52 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog70 hydrog ? ? A G 39 N1 ? ? ? 1_555 A U 50 O2 ? ? B G 39 B U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A G 39 O6 ? ? ? 1_555 A U 50 N3 ? ? B G 39 B U 50 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog72 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 49 N1 ? ? B C 40 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 49 O6 ? ? B C 40 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 49 N2 ? ? B C 40 B G 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 48 N3 ? ? B G 41 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 48 O2 ? ? B G 41 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 48 N4 ? ? B G 41 B C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 70 N1 ? ? ? 1_555 A U 86 O2 ? ? B G 70 B U 86 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog79 hydrog ? ? A G 70 O6 ? ? ? 1_555 A U 86 N3 ? ? B G 70 B U 86 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog80 hydrog ? ? A C 71 N3 ? ? ? 1_555 A G 85 N1 ? ? B C 71 B G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 71 N4 ? ? ? 1_555 A G 85 O6 ? ? B C 71 B G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 71 O2 ? ? ? 1_555 A G 85 N2 ? ? B C 71 B G 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 72 N1 ? ? ? 1_555 A C 84 N3 ? ? B G 72 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 72 N2 ? ? ? 1_555 A C 84 O2 ? ? B G 72 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 72 O6 ? ? ? 1_555 A C 84 N4 ? ? B G 72 B C 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 73 N1 ? ? ? 1_555 A C 83 N3 ? ? B G 73 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 73 N2 ? ? ? 1_555 A C 83 O2 ? ? B G 73 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 73 O6 ? ? ? 1_555 A C 83 N4 ? ? B G 73 B C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 74 N1 ? ? ? 1_555 A C 82 N3 ? ? B G 74 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 74 N2 ? ? ? 1_555 A C 82 O2 ? ? B G 74 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 74 O6 ? ? ? 1_555 A C 82 N4 ? ? B G 74 B C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A U 75 N3 ? ? ? 1_555 A A 79 N7 ? ? B U 75 B A 79 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog93 hydrog ? ? A U 75 O2 ? ? ? 1_555 A A 79 N6 ? ? B U 75 B A 79 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 101 ? 2 'binding site for residue MG B 101' AC2 Software B MG 102 ? 1 'binding site for residue MG B 102' AC3 Software B MG 103 ? 3 'binding site for residue MG B 103' AC4 Software B MG 105 ? 2 'binding site for residue MG B 105' AC5 Software B MG 106 ? 2 'binding site for residue MG B 106' AC6 Software B MG 107 ? 2 'binding site for residue MG B 107' AC7 Software B BA 108 ? 2 'binding site for residue BA B 108' AC8 Software B BA 109 ? 1 'binding site for residue BA B 109' AC9 Software B BA 110 ? 4 'binding site for residue BA B 110' AD1 Software B BA 111 ? 1 'binding site for residue BA B 111' AD2 Software B BA 112 ? 3 'binding site for residue BA B 112' AD3 Software B BA 113 ? 3 'binding site for residue BA B 113' AD4 Software B BA 114 ? 1 'binding site for residue BA B 114' AD5 Software B BA 115 ? 1 'binding site for residue BA B 115' AD6 Software B BA 116 ? 1 'binding site for residue BA B 116' AD7 Software B BA 117 ? 1 'binding site for residue BA B 117' AD8 Software B BA 118 ? 1 'binding site for residue BA B 118' AD9 Software B BA 120 ? 1 'binding site for residue BA B 120' AE1 Software B BA 121 ? 1 'binding site for residue BA B 121' AE2 Software B BA 122 ? 2 'binding site for residue BA B 122' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 G A 7 ? G B 7 . ? 1_555 ? 2 AC1 2 G A 15 ? G B 15 . ? 1_555 ? 3 AC2 1 G A 53 ? G B 53 . ? 1_555 ? 4 AC3 3 G A 41 ? G B 41 . ? 1_555 ? 5 AC3 3 C A 42 ? C B 42 . ? 1_555 ? 6 AC3 3 U A 43 ? U B 43 . ? 1_555 ? 7 AC4 2 G A 65 ? G B 65 . ? 1_555 ? 8 AC4 2 G A 66 ? G B 66 . ? 1_555 ? 9 AC5 2 G A 3 ? G B 3 . ? 1_555 ? 10 AC5 2 G A 4 ? G B 4 . ? 1_555 ? 11 AC6 2 G A 66 ? G B 66 . ? 1_555 ? 12 AC6 2 G A 67 ? G B 67 . ? 1_555 ? 13 AC7 2 U A 50 ? U B 50 . ? 1_555 ? 14 AC7 2 G A 51 ? G B 51 . ? 1_555 ? 15 AC8 1 G A 66 ? G B 66 . ? 1_555 ? 16 AC9 4 G A 7 ? G B 7 . ? 1_555 ? 17 AC9 4 G A 70 ? G B 70 . ? 1_555 ? 18 AC9 4 G A 85 ? G B 85 . ? 1_555 ? 19 AC9 4 U A 86 ? U B 86 . ? 1_555 ? 20 AD1 1 U A 76 ? U B 76 . ? 1_555 ? 21 AD2 3 G A 73 ? G B 73 . ? 1_555 ? 22 AD2 3 G A 74 ? G B 74 . ? 1_555 ? 23 AD2 3 A A 79 ? A B 79 . ? 1_555 ? 24 AD3 3 U A 75 ? U B 75 . ? 1_555 ? 25 AD3 3 U A 76 ? U B 76 . ? 1_555 ? 26 AD3 3 A A 79 ? A B 79 . ? 1_555 ? 27 AD4 1 G A 17 ? G B 17 . ? 1_555 ? 28 AD5 1 A A 9 ? A B 9 . ? 1_555 ? 29 AD6 1 A A 44 ? A B 44 . ? 1_555 ? 30 AD7 1 G A 52 ? G B 52 . ? 1_555 ? 31 AD8 1 A A 37 ? A B 37 . ? 1_555 ? 32 AD9 1 A A 9 ? A B 9 . ? 1_555 ? 33 AE1 1 U A 16 ? U B 16 . ? 2_655 ? 34 AE2 2 A A 20 ? A B 20 . ? 1_555 ? 35 AE2 2 G A 80 ? G B 80 . ? 1_555 ? # _atom_sites.entry_id 6JXM _atom_sites.fract_transf_matrix[1][1] 0.008321 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008321 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005334 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 C 2 2 2 C C B . n A 1 3 G 3 3 3 G G B . n A 1 4 G 4 4 4 G G B . n A 1 5 A 5 5 5 A A B . n A 1 6 A 6 6 6 A A B . n A 1 7 G 7 7 7 G G B . n A 1 8 U 8 8 8 U U B . n A 1 9 A 9 9 9 A A B . n A 1 10 G 10 10 10 G G B . n A 1 11 U 11 11 11 U U B . n A 1 12 U 12 12 12 U U B . n A 1 13 C 13 13 13 C C B . n A 1 14 A 14 14 14 A A B . n A 1 15 G 15 15 15 G G B . n A 1 16 U 16 16 16 U U B . n A 1 17 G 17 17 17 G G B . n A 1 18 G 18 18 18 G G B . n A 1 19 U 19 19 19 U U B . n A 1 20 A 20 20 20 A A B . n A 1 21 G 21 21 21 G G B . n A 1 22 A 22 22 22 A A B . n A 1 23 A 23 23 23 A A B . n A 1 24 C 24 24 24 C C B . n A 1 25 A 25 25 25 A A B . n A 1 26 C 26 26 26 C C B . n A 1 27 C 27 27 27 C C B . n A 1 28 C 28 28 28 C C B . n A 1 29 G 29 29 29 G G B . n A 1 30 A 30 30 30 A A B . n A 1 31 C 31 31 31 C C B . n A 1 32 A 32 32 32 A A B . n A 1 33 G 33 33 33 G G B . n A 1 34 A 34 34 34 A A B . n A 1 35 C 35 35 35 C C B . n A 1 36 G 36 36 36 G G B . n A 1 37 A 37 37 37 A A B . n A 1 38 A 38 38 38 A A B . n A 1 39 G 39 39 39 G G B . n A 1 40 C 40 40 40 C C B . n A 1 41 G 41 41 41 G G B . n A 1 42 C 42 42 42 C C B . n A 1 43 U 43 43 43 U U B . n A 1 44 A 44 44 44 A A B . n A 1 45 A 45 45 45 A A B . n A 1 46 A 46 46 46 A A B . n A 1 47 A 47 47 47 A A B . n A 1 48 C 48 48 48 C C B . n A 1 49 G 49 49 49 G G B . n A 1 50 U 50 50 50 U U B . n A 1 51 G 51 51 51 G G B . n A 1 52 G 52 52 52 G G B . n A 1 53 G 53 53 53 G G B . n A 1 54 A 54 54 54 A A B . n A 1 55 U 55 55 55 U U B . n A 1 56 U 56 56 56 U U B . n A 1 57 C 57 57 57 C C B . n A 1 58 U 58 58 58 U U B . n A 1 59 G 59 59 59 G G B . n A 1 60 U 60 60 60 U U B . n A 1 61 C 61 61 61 C C B . n A 1 62 G 62 62 62 G G B . n A 1 63 G 63 63 63 G G B . n A 1 64 G 64 64 64 G G B . n A 1 65 G 65 65 65 G G B . n A 1 66 G 66 66 66 G G B . n A 1 67 G 67 67 67 G G B . n A 1 68 U 68 68 68 U U B . n A 1 69 C 69 69 69 C C B . n A 1 70 G 70 70 70 G G B . n A 1 71 C 71 71 71 C C B . n A 1 72 G 72 72 72 G G B . n A 1 73 G 73 73 73 G G B . n A 1 74 G 74 74 74 G G B . n A 1 75 U 75 75 75 U U B . n A 1 76 U 76 76 76 U U B . n A 1 77 C 77 77 77 C C B . n A 1 78 G 78 78 78 G G B . n A 1 79 A 79 79 79 A A B . n A 1 80 G 80 80 80 G G B . n A 1 81 U 81 81 81 U U B . n A 1 82 C 82 82 82 C C B . n A 1 83 C 83 83 83 C C B . n A 1 84 C 84 84 84 C C B . n A 1 85 G 85 85 85 G G B . n A 1 86 U 86 86 86 U U B . n A 1 87 C 87 87 87 C C B . n A 1 88 U 88 88 88 U U B . n A 1 89 U 89 89 89 U U B . n A 1 90 C 90 90 90 C C B . n A 1 91 C 91 91 91 C C B . n A 1 92 G 92 92 92 G G B . n A 1 93 C 93 93 93 C C B . n A 1 94 U 94 94 94 U U B . n A 1 95 C 95 95 95 C C B . n A 1 96 C 96 96 96 C C B . n A 1 97 A 97 97 97 A A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 26 MG MG B . C 2 MG 1 102 28 MG MG B . D 2 MG 1 103 31 MG MG B . E 2 MG 1 104 32 MG MG B . F 2 MG 1 105 33 MG MG B . G 2 MG 1 106 34 MG MG B . H 2 MG 1 107 35 MG MG B . I 3 BA 1 108 1 BA BA B . J 3 BA 1 109 3 BA BA B . K 3 BA 1 110 5 BA BA B . L 3 BA 1 111 6 BA BA B . M 3 BA 1 112 7 BA BA B . N 3 BA 1 113 8 BA BA B . O 3 BA 1 114 9 BA BA B . P 3 BA 1 115 11 BA BA B . Q 3 BA 1 116 12 BA BA B . R 3 BA 1 117 13 BA BA B . S 3 BA 1 118 15 BA BA B . T 3 BA 1 119 19 BA BA B . U 3 BA 1 120 21 BA BA B . V 3 BA 1 121 23 BA BA B . W 3 BA 1 122 24 BA BA B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4140 ? 1 MORE -199 ? 1 'SSA (A^2)' 16470 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 7 ? B G 7 ? 1_555 BA ? K BA . ? B BA 110 ? 1_555 O6 ? A G 70 ? B G 70 ? 1_555 63.3 ? 2 O6 ? A G 7 ? B G 7 ? 1_555 BA ? K BA . ? B BA 110 ? 1_555 O6 ? A G 85 ? B G 85 ? 1_555 118.7 ? 3 O6 ? A G 70 ? B G 70 ? 1_555 BA ? K BA . ? B BA 110 ? 1_555 O6 ? A G 85 ? B G 85 ? 1_555 60.0 ? 4 O6 ? A G 7 ? B G 7 ? 1_555 BA ? K BA . ? B BA 110 ? 1_555 O4 ? A U 86 ? B U 86 ? 1_555 79.1 ? 5 O6 ? A G 70 ? B G 70 ? 1_555 BA ? K BA . ? B BA 110 ? 1_555 O4 ? A U 86 ? B U 86 ? 1_555 61.2 ? 6 O6 ? A G 85 ? B G 85 ? 1_555 BA ? K BA . ? B BA 110 ? 1_555 O4 ? A U 86 ? B U 86 ? 1_555 54.6 ? 7 OP1 ? A A 9 ? B A 9 ? 1_555 BA ? P BA . ? B BA 115 ? 1_555 OP2 ? A A 9 ? B A 9 ? 1_555 49.2 ? 8 O2 ? A U 16 ? B U 16 ? 1_555 BA ? V BA . ? B BA 121 ? 2_655 O4 ? A U 16 ? B U 16 ? 1_555 87.6 ? 9 OP2 ? A G 41 ? B G 41 ? 1_555 MG ? D MG . ? B MG 103 ? 1_555 "O4'" ? A C 42 ? B C 42 ? 1_555 130.8 ? 10 O4 ? A U 50 ? B U 50 ? 1_555 BA ? I BA . ? B BA 108 ? 1_555 O6 ? A G 51 ? B G 51 ? 1_555 52.0 ? 11 O6 ? A G 74 ? B G 74 ? 1_555 BA ? M BA . ? B BA 112 ? 1_555 "O2'" ? A A 79 ? B A 79 ? 1_555 79.0 ? 12 O4 ? A U 75 ? B U 75 ? 1_555 BA ? N BA . ? B BA 113 ? 1_555 O4 ? A U 76 ? B U 76 ? 1_555 57.3 ? 13 O4 ? A U 75 ? B U 75 ? 1_555 BA ? N BA . ? B BA 113 ? 1_555 OP2 ? A A 79 ? B A 79 ? 1_555 77.3 ? 14 O4 ? A U 76 ? B U 76 ? 1_555 BA ? N BA . ? B BA 113 ? 1_555 OP2 ? A A 79 ? B A 79 ? 1_555 64.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-08-21 2 'Structure model' 1 1 2019-10-09 3 'Structure model' 1 2 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.value' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B U 60 ? OP1 ? A U 60 OP1 2 1 Y 1 B C 61 ? OP1 ? A C 61 OP1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 BA BA BA N N 38 C OP3 O N N 39 C P P N N 40 C OP1 O N N 41 C OP2 O N N 42 C "O5'" O N N 43 C "C5'" C N N 44 C "C4'" C N R 45 C "O4'" O N N 46 C "C3'" C N S 47 C "O3'" O N N 48 C "C2'" C N R 49 C "O2'" O N N 50 C "C1'" C N R 51 C N1 N N N 52 C C2 C N N 53 C O2 O N N 54 C N3 N N N 55 C C4 C N N 56 C N4 N N N 57 C C5 C N N 58 C C6 C N N 59 C HOP3 H N N 60 C HOP2 H N N 61 C "H5'" H N N 62 C "H5''" H N N 63 C "H4'" H N N 64 C "H3'" H N N 65 C "HO3'" H N N 66 C "H2'" H N N 67 C "HO2'" H N N 68 C "H1'" H N N 69 C H41 H N N 70 C H42 H N N 71 C H5 H N N 72 C H6 H N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 MG MG MG N N 112 U OP3 O N N 113 U P P N N 114 U OP1 O N N 115 U OP2 O N N 116 U "O5'" O N N 117 U "C5'" C N N 118 U "C4'" C N R 119 U "O4'" O N N 120 U "C3'" C N S 121 U "O3'" O N N 122 U "C2'" C N R 123 U "O2'" O N N 124 U "C1'" C N R 125 U N1 N N N 126 U C2 C N N 127 U O2 O N N 128 U N3 N N N 129 U C4 C N N 130 U O4 O N N 131 U C5 C N N 132 U C6 C N N 133 U HOP3 H N N 134 U HOP2 H N N 135 U "H5'" H N N 136 U "H5''" H N N 137 U "H4'" H N N 138 U "H3'" H N N 139 U "HO3'" H N N 140 U "H2'" H N N 141 U "HO2'" H N N 142 U "H1'" H N N 143 U H3 H N N 144 U H5 H N N 145 U H6 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6JXM 'double helix' 6JXM 'a-form double helix' 6JXM 'parallel strands' 6JXM 'hairpin loop' 6JXM 'mismatched base pair' 6JXM 'internal loop' 6JXM 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 A G 92 1_555 0.433 -0.051 -0.474 1.234 -6.113 -5.570 1 B_C2:G92_B B 2 ? B 92 ? 19 1 1 A G 3 1_555 A C 91 1_555 -0.104 0.773 -0.089 -0.601 2.169 -5.479 2 B_G3:C91_B B 3 ? B 91 ? ? ? 1 A G 4 1_555 A C 90 1_555 0.613 0.691 -0.542 -14.540 -11.604 -2.426 3 B_G4:C90_B B 4 ? B 90 ? 19 1 1 A A 5 1_555 A U 89 1_555 -0.009 -0.082 -0.157 -9.151 -21.968 -2.457 4 B_A5:U89_B B 5 ? B 89 ? 20 1 1 A A 6 1_555 A U 88 1_555 0.403 -0.185 0.683 -0.969 -9.959 3.469 5 B_A6:U88_B B 6 ? B 88 ? 20 1 1 A G 7 1_555 A C 87 1_555 -0.538 -0.210 0.412 -1.615 -18.503 -2.328 6 B_G7:C87_B B 7 ? B 87 ? 19 1 1 A G 70 1_555 A U 86 1_555 -2.222 -0.768 -0.204 -9.596 -14.382 -6.136 7 B_G70:U86_B B 70 ? B 86 ? 28 1 1 A C 71 1_555 A G 85 1_555 -0.453 0.052 0.151 -5.355 -14.540 2.936 8 B_C71:G85_B B 71 ? B 85 ? 19 1 1 A G 72 1_555 A C 84 1_555 0.318 -0.066 0.742 3.998 -0.880 3.812 9 B_G72:C84_B B 72 ? B 84 ? 19 1 1 A G 73 1_555 A C 83 1_555 -0.149 -0.414 -1.021 -13.024 -17.203 0.631 10 B_G73:C83_B B 73 ? B 83 ? 19 1 1 A G 74 1_555 A C 82 1_555 -0.253 -0.285 0.482 -14.631 -6.581 -1.203 11 B_G74:C82_B B 74 ? B 82 ? 19 1 1 A U 75 1_555 A A 79 1_555 4.369 -1.997 1.089 -0.295 7.710 -105.010 12 B_U75:A79_B B 75 ? B 79 ? 24 4 1 A U 76 1_555 A G 17 1_555 0.547 -4.447 1.739 6.048 2.762 -94.429 13 B_U76:G17_B B 76 ? B 17 ? ? 6 1 A G 53 1_555 A C 35 1_555 0.672 -0.158 -1.432 -31.256 -2.067 -17.632 14 B_G53:C35_B B 53 ? B 35 ? 19 1 1 A U 56 1_555 A A 34 1_555 0.417 0.023 -0.777 0.075 0.392 -13.798 15 B_U56:A34_B B 56 ? B 34 ? 20 1 1 A C 57 1_555 A G 33 1_555 0.424 -0.145 0.419 -5.427 -5.726 -6.092 16 B_C57:G33_B B 57 ? B 33 ? 19 1 1 A U 58 1_555 A A 32 1_555 -0.322 -0.161 -0.003 0.515 -12.675 -4.240 17 B_U58:A32_B B 58 ? B 32 ? 20 1 1 A G 59 1_555 A C 31 1_555 -0.459 -0.111 0.427 -10.646 -12.885 0.784 18 B_G59:C31_B B 59 ? B 31 ? 19 1 1 A U 60 1_555 A A 30 1_555 -0.588 -0.342 0.713 -5.086 -10.037 -3.228 19 B_U60:A30_B B 60 ? B 30 ? 20 1 1 A C 61 1_555 A G 29 1_555 0.364 -0.302 0.421 0.409 -19.803 2.038 20 B_C61:G29_B B 61 ? B 29 ? 19 1 1 A G 62 1_555 A C 28 1_555 -0.090 -0.151 0.936 5.728 -5.039 2.799 21 B_G62:C28_B B 62 ? B 28 ? 19 1 1 A G 63 1_555 A C 27 1_555 -0.005 -0.039 0.386 0.522 -18.946 2.742 22 B_G63:C27_B B 63 ? B 27 ? 19 1 1 A G 64 1_555 A C 26 1_555 0.009 0.078 0.284 -22.665 -27.921 2.257 23 B_G64:C26_B B 64 ? B 26 ? 19 1 1 A G 65 1_555 A A 25 1_555 0.095 1.954 0.713 -29.931 -12.621 -10.752 24 B_G65:A25_B B 65 ? B 25 ? 8 1 1 A G 10 1_555 A C 24 1_555 -0.531 -0.206 -0.333 -10.011 -11.792 1.760 25 B_G10:C24_B B 10 ? B 24 ? 19 1 1 A U 11 1_555 A A 23 1_555 -0.087 -0.109 0.541 -21.080 -15.574 3.366 26 B_U11:A23_B B 11 ? B 23 ? 20 1 1 A U 12 1_555 A A 22 1_555 -0.347 0.197 0.297 -11.225 -17.018 -11.393 27 B_U12:A22_B B 12 ? B 22 ? 20 1 1 A C 13 1_555 A G 21 1_555 1.110 -0.267 -0.120 8.463 -16.095 5.435 28 B_C13:G21_B B 13 ? B 21 ? 19 1 1 A A 14 1_555 A U 8 1_555 -4.403 -2.432 -0.506 -1.236 -1.073 -98.512 29 B_A14:U8_B B 14 ? B 8 ? 24 4 1 A G 15 1_555 A C 69 1_555 -0.056 4.400 -0.378 -1.625 -8.246 171.032 30 B_G15:C69_B B 15 ? B 69 ? 22 2 1 A G 18 1_555 A C 77 1_555 -0.125 -0.366 -0.004 -7.487 -18.259 0.752 31 B_G18:C77_B B 18 ? B 77 ? 19 1 1 A A 38 1_555 A G 52 1_555 -6.774 -3.928 0.278 42.199 -3.389 1.791 32 B_A38:G52_B B 38 ? B 52 ? 11 9 1 A G 39 1_555 A U 50 1_555 -1.992 -0.470 0.804 9.446 -2.048 5.130 33 B_G39:U50_B B 39 ? B 50 ? 28 1 1 A C 40 1_555 A G 49 1_555 0.992 -0.088 -0.407 9.316 -16.365 -3.419 34 B_C40:G49_B B 40 ? B 49 ? 19 1 1 A G 41 1_555 A C 48 1_555 -0.794 0.224 -0.369 -7.675 -10.300 6.649 35 B_G41:C48_B B 41 ? B 48 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 A G 92 1_555 A G 3 1_555 A C 91 1_555 0.246 -1.992 3.400 0.013 7.345 21.856 -7.413 -0.612 2.600 18.705 -0.034 23.043 1 BB_C2G3:C91G92_BB B 2 ? B 92 ? B 3 ? B 91 ? 1 A G 3 1_555 A C 91 1_555 A G 4 1_555 A C 90 1_555 0.247 -2.288 3.581 4.845 12.647 35.949 -5.048 0.224 2.666 19.653 -7.529 38.336 2 BB_G3G4:C90C91_BB B 3 ? B 91 ? B 4 ? B 90 ? 1 A G 4 1_555 A C 90 1_555 A A 5 1_555 A U 89 1_555 -0.209 -1.523 3.097 -2.073 4.561 26.141 -4.397 -0.041 2.803 9.967 4.531 26.608 3 BB_G4A5:U89C90_BB B 4 ? B 90 ? B 5 ? B 89 ? 1 A A 5 1_555 A U 89 1_555 A A 6 1_555 A U 88 1_555 0.375 -1.312 2.877 -6.857 4.214 36.006 -2.558 -1.380 2.599 6.715 10.925 36.865 4 BB_A5A6:U88U89_BB B 5 ? B 89 ? B 6 ? B 88 ? 1 A A 6 1_555 A U 88 1_555 A G 7 1_555 A C 87 1_555 0.015 -1.611 3.151 5.444 17.944 28.139 -5.202 0.709 1.804 32.713 -9.925 33.710 5 BB_A6G7:C87U88_BB B 6 ? B 88 ? B 7 ? B 87 ? 1 A G 7 1_555 A C 87 1_555 A G 70 1_555 A U 86 1_555 -0.250 -2.102 3.158 -1.852 10.855 29.560 -5.609 0.164 2.274 20.404 3.482 31.502 6 BB_G7G70:U86C87_BB B 7 ? B 87 ? B 70 ? B 86 ? 1 A G 70 1_555 A U 86 1_555 A C 71 1_555 A G 85 1_555 -0.335 -1.397 2.953 -3.754 3.835 42.690 -2.242 0.126 2.841 5.243 5.133 43.010 7 BB_G70C71:G85U86_BB B 70 ? B 86 ? B 71 ? B 85 ? 1 A C 71 1_555 A G 85 1_555 A G 72 1_555 A C 84 1_555 0.400 -1.751 2.869 -4.815 1.887 32.292 -3.389 -1.422 2.679 3.366 8.588 32.693 8 BB_C71G72:C84G85_BB B 71 ? B 85 ? B 72 ? B 84 ? 1 A G 72 1_555 A C 84 1_555 A G 73 1_555 A C 83 1_555 -0.183 -2.309 3.847 12.152 7.266 27.365 -5.895 2.924 2.826 14.215 -23.775 30.749 9 BB_G72G73:C83C84_BB B 72 ? B 84 ? B 73 ? B 83 ? 1 A G 73 1_555 A C 83 1_555 A G 74 1_555 A C 82 1_555 0.670 -1.744 3.000 -9.891 5.335 35.446 -3.347 -2.180 2.453 8.502 15.764 37.131 10 BB_G73G74:C82C83_BB B 73 ? B 83 ? B 74 ? B 82 ? 1 A G 74 1_555 A C 82 1_555 A U 75 1_555 A A 79 1_555 -2.114 -2.494 2.943 -0.870 -4.035 91.619 -1.667 1.458 3.042 -2.813 0.607 91.691 11 BB_G74U75:A79C82_BB B 74 ? B 82 ? B 75 ? B 79 ? 1 A U 75 1_555 A A 79 1_555 A U 76 1_555 A G 17 1_555 1.845 -1.923 3.203 16.433 4.665 37.434 -3.286 -0.723 3.435 6.849 -24.128 41.020 12 BB_U75U76:G17A79_BB B 75 ? B 79 ? B 76 ? B 17 ? 1 A G 53 1_555 A C 35 1_555 A U 56 1_555 A A 34 1_555 0.127 -0.955 2.673 -4.112 9.734 37.915 -2.325 -0.570 2.341 14.637 6.183 39.308 13 BB_G53U56:A34C35_BB B 53 ? B 35 ? B 56 ? B 34 ? 1 A U 56 1_555 A A 34 1_555 A C 57 1_555 A G 33 1_555 0.576 -2.028 3.385 -4.559 7.711 33.579 -4.529 -1.634 2.766 13.061 7.722 34.721 14 BB_U56C57:G33A34_BB B 56 ? B 34 ? B 57 ? B 33 ? 1 A C 57 1_555 A G 33 1_555 A U 58 1_555 A A 32 1_555 -0.181 -1.874 2.903 3.838 1.813 26.835 -4.385 1.221 2.720 3.877 -8.204 27.163 15 BB_C57U58:A32G33_BB B 57 ? B 33 ? B 58 ? B 32 ? 1 A U 58 1_555 A A 32 1_555 A G 59 1_555 A C 31 1_555 0.236 -2.018 3.254 -2.141 11.174 29.437 -5.558 -0.787 2.329 21.025 4.029 31.514 16 BB_U58G59:C31A32_BB B 58 ? B 32 ? B 59 ? B 31 ? 1 A G 59 1_555 A C 31 1_555 A U 60 1_555 A A 30 1_555 -0.776 -1.512 2.982 -3.969 3.090 31.801 -3.227 0.758 2.899 5.595 7.188 32.186 17 BB_G59U60:A30C31_BB B 59 ? B 31 ? B 60 ? B 30 ? 1 A U 60 1_555 A A 30 1_555 A C 61 1_555 A G 29 1_555 0.596 -1.526 2.836 3.876 2.637 36.498 -2.726 -0.491 2.769 4.189 -6.157 36.788 18 BB_U60C61:G29A30_BB B 60 ? B 30 ? B 61 ? B 29 ? 1 A C 61 1_555 A G 29 1_555 A G 62 1_555 A C 28 1_555 -0.066 -1.663 2.814 -5.396 7.310 26.437 -4.832 -0.886 2.252 15.416 11.379 27.928 19 BB_C61G62:C28G29_BB B 61 ? B 29 ? B 62 ? B 28 ? 1 A G 62 1_555 A C 28 1_555 A G 63 1_555 A C 27 1_555 -0.084 -1.957 3.427 5.144 0.385 33.714 -3.401 0.995 3.356 0.658 -8.806 34.095 20 BB_G62G63:C27C28_BB B 62 ? B 28 ? B 63 ? B 27 ? 1 A G 63 1_555 A C 27 1_555 A G 64 1_555 A C 26 1_555 0.096 -1.690 3.663 1.479 9.581 39.371 -3.580 0.037 3.184 13.966 -2.156 40.501 21 BB_G63G64:C26C27_BB B 63 ? B 27 ? B 64 ? B 26 ? 1 A G 64 1_555 A C 26 1_555 A G 65 1_555 A A 25 1_555 -0.611 -1.668 3.141 0.512 6.757 31.952 -4.031 1.167 2.730 12.104 -0.917 32.645 22 BB_G64G65:A25C26_BB B 64 ? B 26 ? B 65 ? B 25 ? 1 A G 65 1_555 A A 25 1_555 A G 10 1_555 A C 24 1_555 -2.853 -3.241 2.810 18.812 7.084 55.911 -3.529 3.542 1.479 7.298 -19.382 59.139 23 BB_G65G10:C24A25_BB B 65 ? B 25 ? B 10 ? B 24 ? 1 A G 10 1_555 A C 24 1_555 A U 11 1_555 A A 23 1_555 -0.693 -1.570 3.382 -7.440 6.697 38.610 -3.090 0.143 3.152 9.926 11.027 39.839 24 BB_G10U11:A23C24_BB B 10 ? B 24 ? B 11 ? B 23 ? 1 A U 11 1_555 A A 23 1_555 A U 12 1_555 A A 22 1_555 -0.543 -1.469 2.801 1.749 5.757 33.454 -3.265 1.158 2.491 9.902 -3.009 33.975 25 BB_U11U12:A22A23_BB B 11 ? B 23 ? B 12 ? B 22 ? 1 A U 12 1_555 A A 22 1_555 A C 13 1_555 A G 21 1_555 2.001 -1.675 2.933 5.900 0.232 27.606 -3.488 -2.786 3.267 0.480 -12.189 28.218 26 BB_U12C13:G21A22_BB B 12 ? B 22 ? B 13 ? B 21 ? 1 A C 13 1_555 A G 21 1_555 A A 14 1_555 A U 8 1_555 -2.113 -0.272 3.800 -4.109 2.634 58.869 -0.435 1.896 3.912 2.675 4.173 59.053 27 BB_C13A14:U8G21_BB B 13 ? B 21 ? B 14 ? B 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 69 1_555 1.987 -2.536 3.297 4.106 4.787 -59.649 2.296 2.195 3.342 -4.798 4.115 -59.951 28 BB_A14G15:C69U8_BB B 14 ? B 8 ? B 15 ? B 69 ? 1 A A 38 1_555 A G 52 1_555 A G 39 1_555 A U 50 1_555 3.020 -1.246 6.632 -41.411 22.553 78.640 -1.758 -3.748 4.534 16.528 30.348 89.686 29 BB_A38G39:U50G52_BB B 38 ? B 52 ? B 39 ? B 50 ? 1 A G 39 1_555 A U 50 1_555 A C 40 1_555 A G 49 1_555 -0.120 -1.684 3.314 10.028 2.417 46.095 -2.302 0.969 3.137 3.043 -12.621 47.174 30 BB_G39C40:G49U50_BB B 39 ? B 50 ? B 40 ? B 49 ? 1 A C 40 1_555 A G 49 1_555 A G 41 1_555 A C 48 1_555 0.503 -1.433 3.785 1.809 13.371 24.956 -6.204 -0.586 2.709 28.442 -3.849 28.319 31 BB_C40G41:C48G49_BB B 40 ? B 49 ? B 41 ? B 48 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31300603 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'BARIUM ION' BA # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4MGM _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #