HEADER MEMBRANE PROTEIN 26-APR-19 6JYD TITLE STRUCTURE OF LIGHT-STATE MARINE BACTERIAL CHLORIDE IMPORTER, NM-R3, TITLE 2 WITH CW LASER (ND-30%) AT 95K. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLORIDE PUMPING RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NONLABENS MARINUS S1-08; SOURCE 3 ORGANISM_TAXID: 1454201; SOURCE 4 STRAIN: S1-08; SOURCE 5 GENE: CLR, NMS_1267; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PHOTO-EXCITATION, CHLORIDE PUMP, RETINAL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.YUN,M.OHKI,S.Y.PARK,W.LEE REVDAT 3 06-NOV-24 6JYD 1 REMARK REVDAT 2 22-NOV-23 6JYD 1 REMARK REVDAT 1 04-MAR-20 6JYD 0 JRNL AUTH J.H.YUN,M.OHKI,J.H.PARK,N.ISHIMOTO,A.SATO-TOMITA,W.LEE, JRNL AUTH 2 Z.JIN,J.R.H.TAME,N.SHIBAYAMA,S.Y.PARK,W.LEE JRNL TITL PUMPING MECHANISM OF NM-R3, A LIGHT-DRIVEN BACTERIAL JRNL TITL 2 CHLORIDE IMPORTER IN THE RHODOPSIN FAMILY. JRNL REF SCI ADV V. 6 Y2042 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 32083178 JRNL DOI 10.1126/SCIADV.AAY2042 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1839 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 21148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3207 - 4.0126 0.99 2677 144 0.1695 0.2019 REMARK 3 2 4.0126 - 3.1851 0.99 2589 150 0.1516 0.1931 REMARK 3 3 3.1851 - 2.7825 0.98 2545 142 0.1518 0.1922 REMARK 3 4 2.7825 - 2.5281 0.97 2571 121 0.1425 0.1747 REMARK 3 5 2.5281 - 2.3469 0.96 2495 137 0.1455 0.2122 REMARK 3 6 2.3469 - 2.2086 0.96 2476 147 0.1625 0.2064 REMARK 3 7 2.2086 - 2.0980 0.95 2458 136 0.1875 0.2328 REMARK 3 8 2.0980 - 2.0066 0.86 2252 108 0.2377 0.2940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2262 REMARK 3 ANGLE : 0.770 3036 REMARK 3 CHIRALITY : 0.026 342 REMARK 3 PLANARITY : 0.004 362 REMARK 3 DIHEDRAL : 12.388 818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300011509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21157 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.308 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% POLYETHYLENE GLYCOL DIMETHYL ETHER REMARK 280 500, 0.15 M SODIUM CHLORIDE, 0.15 M CALCIUM CHLORIDE, AND 0.1 M REMARK 280 MES (PH 6.0) BUFFER, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.39150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.64250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.39150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.64250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ALA A -14 REMARK 465 SER A -13 REMARK 465 MET A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 GLN A -8 REMARK 465 GLN A -7 REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 ARG A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ASN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 266 REMARK 465 MET A 267 REMARK 465 ASP A 268 REMARK 465 SER A 269 REMARK 465 LYS A 270 REMARK 465 ALA A 271 REMARK 465 ALA A 272 REMARK 465 LEU A 273 REMARK 465 GLU A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 458 2.08 REMARK 500 O HOH A 401 O HOH A 436 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 86 -128.32 -104.41 REMARK 500 MET A 214 71.49 -150.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 304 REMARK 610 OLA A 306 REMARK 610 OLA A 307 REMARK 610 OLA A 308 REMARK 610 OLA A 309 REMARK 610 OLA A 310 REMARK 610 OLA A 311 REMARK 610 OLA A 312 REMARK 610 OLA A 313 REMARK 610 OLA A 314 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 314 DBREF 6JYD A 1 272 UNP W8VZW3 W8VZW3_9FLAO 1 272 SEQADV 6JYD MET A -15 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD ALA A -14 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD SER A -13 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD MET A -12 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD THR A -11 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD GLY A -10 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD GLY A -9 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD GLN A -8 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD GLN A -7 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD MET A -6 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD GLY A -5 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD ARG A -4 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD ASP A -3 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD PRO A -2 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD ASN A -1 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD SER A 0 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD LEU A 273 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD GLU A 274 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD HIS A 275 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD HIS A 276 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD HIS A 277 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD HIS A 278 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD HIS A 279 UNP W8VZW3 EXPRESSION TAG SEQADV 6JYD HIS A 280 UNP W8VZW3 EXPRESSION TAG SEQRES 1 A 296 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP SEQRES 2 A 296 PRO ASN SER MET LYS ASN ILE GLU SER LEU PHE ASP TYR SEQRES 3 A 296 SER ALA GLY GLN PHE GLU PHE ILE ASP HIS LEU LEU THR SEQRES 4 A 296 MET GLY VAL GLY VAL HIS PHE ALA ALA LEU ILE PHE PHE SEQRES 5 A 296 LEU VAL VAL SER GLN PHE VAL ALA PRO LYS TYR ARG ILE SEQRES 6 A 296 ALA THR ALA LEU SER CYS ILE VAL MET VAL SER ALA GLY SEQRES 7 A 296 LEU ILE LEU ASN SER GLN ALA VAL MET TRP THR ASP ALA SEQRES 8 A 296 TYR ALA TYR VAL ASP GLY SER TYR GLN LEU GLN ASP LEU SEQRES 9 A 296 THR PHE SER ASN GLY TYR ARG TYR VAL ASN TRP MET ALA SEQRES 10 A 296 THR ILE PRO CYS LEU LEU LEU GLN LEU LEU ILE VAL LEU SEQRES 11 A 296 ASN LEU LYS GLY LYS GLU LEU PHE SER THR ALA THR TRP SEQRES 12 A 296 LEU ILE LEU ALA ALA TRP GLY MET ILE ILE THR GLY TYR SEQRES 13 A 296 VAL GLY GLN LEU TYR GLU VAL ASP ASP ILE ALA GLN LEU SEQRES 14 A 296 MET ILE TRP GLY ALA VAL SER THR ALA PHE PHE VAL VAL SEQRES 15 A 296 MET ASN TRP ILE VAL GLY THR LYS ILE PHE LYS ASN ARG SEQRES 16 A 296 ALA THR MET LEU GLY GLY THR ASP SER THR ILE THR LYS SEQRES 17 A 296 VAL PHE TRP LEU MET MET PHE ALA TRP THR LEU TYR PRO SEQRES 18 A 296 ILE ALA TYR LEU VAL PRO ALA PHE MET ASN ASN ALA ASP SEQRES 19 A 296 GLY VAL VAL LEU ARG GLN LEU LEU PHE THR ILE ALA ASP SEQRES 20 A 296 ILE SER SER LYS VAL ILE TYR GLY LEU MET ILE THR TYR SEQRES 21 A 296 ILE ALA ILE GLN GLN SER ALA ALA ALA GLY TYR VAL PRO SEQRES 22 A 296 ALA GLN GLN ALA LEU GLY ARG ILE GLY MET ASP SER LYS SEQRES 23 A 296 ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET RET A 301 20 HET CL A 302 1 HET CL A 303 1 HET OLA A 304 14 HET OLA A 305 20 HET OLA A 306 18 HET OLA A 307 10 HET OLA A 308 12 HET OLA A 309 10 HET OLA A 310 6 HET OLA A 311 9 HET OLA A 312 9 HET OLA A 313 9 HET OLA A 314 11 HETNAM RET RETINAL HETNAM CL CHLORIDE ION HETNAM OLA OLEIC ACID FORMUL 2 RET C20 H28 O FORMUL 3 CL 2(CL 1-) FORMUL 5 OLA 11(C18 H34 O2) FORMUL 16 HOH *88(H2 O) HELIX 1 AA1 ASN A 3 PHE A 8 5 6 HELIX 2 AA2 SER A 11 SER A 40 1 30 HELIX 3 AA3 GLN A 41 VAL A 43 5 3 HELIX 4 AA4 TYR A 47 ALA A 75 1 29 HELIX 5 AA5 ASN A 92 LEU A 114 1 23 HELIX 6 AA6 LYS A 117 LEU A 144 1 28 HELIX 7 AA7 ASP A 149 ARG A 179 1 31 HELIX 8 AA8 ALA A 180 MET A 182 5 3 HELIX 9 AA9 GLY A 185 MET A 214 1 30 HELIX 10 AB1 ASN A 216 ALA A 253 1 38 HELIX 11 AB2 TYR A 255 ILE A 265 1 11 SHEET 1 AA1 2 TYR A 76 VAL A 79 0 SHEET 2 AA1 2 SER A 82 LEU A 85 -1 O SER A 82 N VAL A 79 LINK NZ LYS A 235 C15 RET A 301 1555 1555 1.35 SITE 1 AC1 12 TRP A 99 ILE A 103 LEU A 106 MET A 135 SITE 2 AC1 12 GLY A 139 SER A 160 PHE A 164 TRP A 201 SITE 3 AC1 12 TYR A 204 TYR A 208 SER A 234 LYS A 235 SITE 1 AC2 3 ASN A 98 THR A 102 LYS A 235 SITE 1 AC3 3 PRO A 45 LYS A 46 HOH A 487 SITE 1 AC4 5 GLN A 152 TRP A 156 VAL A 159 LYS A 192 SITE 2 AC4 5 TRP A 195 SITE 1 AC5 6 PHE A 17 VAL A 165 THR A 173 LEU A 225 SITE 2 AC5 6 OLA A 307 HOH A 440 SITE 1 AC6 7 MET A 154 GLY A 157 THR A 161 MET A 241 SITE 2 AC6 7 TYR A 244 OLA A 311 HOH A 415 SITE 1 AC7 3 PHE A 17 OLA A 305 HOH A 451 SITE 1 AC8 2 GLN A 41 ASN A 66 SITE 1 AC9 2 PHE A 163 PHE A 199 SITE 1 AD1 2 PHE A 35 OLA A 306 SITE 1 AD2 1 TRP A 195 SITE 1 AD3 1 HOH A 407 SITE 1 AD4 1 GLY A 134 CRYST1 102.783 49.285 69.334 90.00 110.03 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009729 0.000000 0.003547 0.00000 SCALE2 0.000000 0.020290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015351 0.00000