HEADER VIRAL PROTEIN 26-APR-19 6JYN TITLE GII.13/21 NOROVIRUSES RECOGNIZE GLYCANS WITH A TERMINAL BETA-GALACTOSE TITLE 2 VIA AN UNCONVENTIONAL GLYCAN BINDING SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN NOROVIRUS P DOMAIN PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN NOROVIRUS - ALPHATRON; SOURCE 3 ORGANISM_TAXID: 106516; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 5 PPPARG4; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS HUMAN NOROVIRUSES, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.DUAN,C.XIN REVDAT 5 27-MAR-24 6JYN 1 HETSYN LINK REVDAT 4 29-JUL-20 6JYN 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 31-JUL-19 6JYN 1 JRNL REVDAT 2 05-JUN-19 6JYN 1 JRNL REVDAT 1 22-MAY-19 6JYN 0 JRNL AUTH X.CONG,X.M.SUN,J.X.QI,H.B.LI,W.G.CHAI,Q.ZHANG,H.WANG, JRNL AUTH 2 X.Y.KONG,J.SONG,L.L.PANG,M.JIN,D.D.LI,M.TAN,Z.J.DUAN JRNL TITL GII.13/21 NOROVIRUSES RECOGNIZE GLYCANS WITH A TERMINAL JRNL TITL 2 BETA-GALACTOSE VIA AN UNCONVENTIONAL GLYCAN BINDING SITE. JRNL REF J.VIROL. V. 93 2019 JRNL REFN ESSN 1098-5514 JRNL PMID 31118252 JRNL DOI 10.1128/JVI.00723-19 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 95.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 171051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.1823 - 4.3363 0.94 8837 473 0.1506 0.1842 REMARK 3 2 4.3363 - 3.4443 0.95 8814 440 0.1478 0.1672 REMARK 3 3 3.4443 - 3.0096 0.95 8790 456 0.1655 0.1851 REMARK 3 4 3.0096 - 2.7348 0.94 8734 482 0.1833 0.1962 REMARK 3 5 2.7348 - 2.5389 0.95 8827 434 0.1877 0.2093 REMARK 3 6 2.5389 - 2.3894 0.95 8770 459 0.1870 0.2263 REMARK 3 7 2.3894 - 2.2698 0.95 8786 447 0.1907 0.2118 REMARK 3 8 2.2698 - 2.1710 0.95 8740 470 0.1934 0.2026 REMARK 3 9 2.1710 - 2.0875 0.94 8730 446 0.1969 0.2127 REMARK 3 10 2.0875 - 2.0155 0.95 8788 448 0.1979 0.2043 REMARK 3 11 2.0155 - 1.9525 0.95 8777 410 0.2037 0.2055 REMARK 3 12 1.9525 - 1.8967 0.95 8749 457 0.2062 0.2329 REMARK 3 13 1.8967 - 1.8468 0.92 8455 454 0.2143 0.2195 REMARK 3 14 1.8468 - 1.8017 0.86 7960 455 0.2144 0.2499 REMARK 3 15 1.8017 - 1.7608 0.81 7485 407 0.2253 0.2402 REMARK 3 16 1.7608 - 1.7233 0.79 7255 426 0.2303 0.2545 REMARK 3 17 1.7233 - 1.6888 0.76 7006 347 0.2378 0.2415 REMARK 3 18 1.6888 - 1.6570 0.73 6657 375 0.2450 0.2441 REMARK 3 19 1.6570 - 1.6274 0.69 6389 299 0.2449 0.2705 REMARK 3 20 1.6274 - 1.5998 0.65 5981 277 0.2537 0.2921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4700 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -53.1842 -18.5286 4.5467 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0930 REMARK 3 T33: 0.0626 T12: 0.0057 REMARK 3 T13: -0.0048 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.4154 L22: 0.5247 REMARK 3 L33: 0.4225 L12: 0.0222 REMARK 3 L13: -0.0554 L23: -0.2339 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: 0.0631 S13: -0.0046 REMARK 3 S21: -0.0070 S22: 0.0005 S23: 0.0272 REMARK 3 S31: -0.0239 S32: -0.0097 S33: -0.0217 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -38.1955 -18.4556 23.9124 REMARK 3 T TENSOR REMARK 3 T11: 0.0633 T22: 0.0961 REMARK 3 T33: 0.0547 T12: -0.0072 REMARK 3 T13: -0.0024 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.5237 L22: 0.5385 REMARK 3 L33: 0.5319 L12: -0.1137 REMARK 3 L13: -0.0588 L23: 0.2588 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.0272 S13: 0.0138 REMARK 3 S21: 0.0004 S22: 0.0165 S23: -0.0341 REMARK 3 S31: -0.0109 S32: 0.0468 S33: -0.0344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -73.1853 -11.7684 46.1755 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.1294 REMARK 3 T33: 0.0627 T12: 0.0042 REMARK 3 T13: 0.0046 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.3392 L22: 0.4861 REMARK 3 L33: 0.5869 L12: 0.0527 REMARK 3 L13: 0.0776 L23: 0.2044 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: 0.0827 S13: -0.0075 REMARK 3 S21: -0.0112 S22: 0.0213 S23: -0.0355 REMARK 3 S31: 0.0012 S32: 0.0799 S33: -0.0273 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -88.2240 -12.0230 65.5852 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.1035 REMARK 3 T33: 0.0662 T12: -0.0014 REMARK 3 T13: 0.0046 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.3858 L22: 0.5310 REMARK 3 L33: 0.6144 L12: -0.0568 REMARK 3 L13: 0.1008 L23: -0.2885 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.0210 S13: 0.0006 REMARK 3 S21: -0.0008 S22: 0.0149 S23: 0.0367 REMARK 3 S31: -0.0022 S32: -0.0596 S33: -0.0261 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JYN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300011978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 184076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3330 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE TRIBASIC REMARK 280 DEHYDRATE, 20 PERCENT POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.46750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 135 O HOH A 701 1.99 REMARK 500 NE2 GLN A 105 O HOH A 701 2.03 REMARK 500 O HOH B 708 O HOH B 985 2.04 REMARK 500 O PHE A 213 O HOH A 702 2.05 REMARK 500 O LEU C 210 O HOH C 701 2.06 REMARK 500 O HOH B 722 O HOH C 796 2.10 REMARK 500 OE2 GLU A 26 O HOH A 703 2.11 REMARK 500 O ASN B 176 O HOH B 701 2.13 REMARK 500 O HOH A 789 O HOH A 793 2.13 REMARK 500 O HOH B 745 O HOH B 999 2.13 REMARK 500 O HOH A 708 O HOH A 733 2.13 REMARK 500 O LEU C 193 O HOH C 702 2.14 REMARK 500 O HOH A 770 O HOH A 871 2.14 REMARK 500 O HOH B 703 O HOH B 937 2.14 REMARK 500 O HOH D 742 O HOH D 864 2.15 REMARK 500 O LEU B 28 O HOH B 702 2.16 REMARK 500 O HOH A 907 O HOH A 1042 2.16 REMARK 500 O HOH B 743 O HOH C 702 2.16 REMARK 500 O HOH C 1046 O HOH D 777 2.17 REMARK 500 OD1 ASN D 293 O HOH D 701 2.17 REMARK 500 O HOH C 737 O HOH C 743 2.17 REMARK 500 O GLN C 117 O HOH C 703 2.17 REMARK 500 OD1 ASN A 35 O HOH A 704 2.18 REMARK 500 OD1 ASN A 76 O HOH A 705 2.18 REMARK 500 O HOH A 793 O HOH A 896 2.18 REMARK 500 O HOH B 983 O HOH B 1029 2.19 REMARK 500 O HOH C 953 O HOH C 1001 2.19 REMARK 500 OE1 GLN C 304 O HOH C 704 2.19 REMARK 500 O HOH D 830 O HOH D 992 2.19 REMARK 500 O HOH A 720 O HOH A 795 2.19 REMARK 500 OD1 ASP D 262 ND2 ASN D 293 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 56 -168.50 -126.21 REMARK 500 TRP A 77 -46.39 -27.55 REMARK 500 ASN A 129 32.70 -92.98 REMARK 500 GLU A 156 80.05 61.90 REMARK 500 ASN A 157 130.64 -28.93 REMARK 500 PRO B 87 -15.52 -49.34 REMARK 500 GLU B 156 83.63 62.21 REMARK 500 ASN B 157 130.04 -28.48 REMARK 500 GLN C 56 -167.84 -129.40 REMARK 500 TRP C 77 -12.68 73.68 REMARK 500 PRO C 87 -16.50 -46.69 REMARK 500 GLU C 156 79.21 61.76 REMARK 500 ASN C 157 132.27 -33.90 REMARK 500 ASP D 75 -77.98 -81.38 REMARK 500 ASN D 76 -56.52 -136.49 REMARK 500 PRO D 87 -17.65 -46.34 REMARK 500 ASN D 129 30.09 -93.98 REMARK 500 GLU D 156 76.96 61.40 REMARK 500 ASN D 157 130.99 -29.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 33 GLU A 34 -137.21 REMARK 500 ASN B 33 GLU B 34 -140.84 REMARK 500 ASN C 33 GLU C 34 -145.00 REMARK 500 ASN D 33 GLU D 34 -143.54 REMARK 500 ASN D 76 TRP D 77 -149.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1105 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A1106 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1107 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1061 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1062 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH D1086 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH D1087 DISTANCE = 6.27 ANGSTROMS DBREF 6JYN A 3 311 PDB 6JYN 6JYN 3 311 DBREF 6JYN B 3 311 PDB 6JYN 6JYN 3 311 DBREF 6JYN C 3 311 PDB 6JYN 6JYN 3 311 DBREF 6JYN D 3 311 PDB 6JYN 6JYN 3 311 SEQRES 1 A 309 THR LYS PRO PHE THR LEU PRO ILE LEU THR ILE SER GLU SEQRES 2 A 309 LEU THR ASN SER ARG PHE PRO ILE PRO ILE GLU GLN LEU SEQRES 3 A 309 TYR THR ALA PRO ASN GLU ASN ASN VAL VAL GLN CYS GLN SEQRES 4 A 309 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 A 309 THR GLN LEU LEU SER SER ALA VAL CYS SER TYR ARG GLY SEQRES 6 A 309 ARG THR VAL ALA ASN SER GLY ASP ASN TRP ASP GLN ASN SEQRES 7 A 309 LEU LEU GLN LEU THR TYR PRO SER GLY ALA SER TYR ASP SEQRES 8 A 309 PRO THR ASP GLU VAL PRO ALA PRO LEU GLY THR GLN ASP SEQRES 9 A 309 PHE SER GLY ILE LEU TYR GLY VAL LEU THR GLN ASP ASN SEQRES 10 A 309 VAL SER GLU GLY THR GLY GLU ALA LYS ASN ALA LYS GLY SEQRES 11 A 309 VAL TYR ILE SER THR THR SER GLY LYS PHE THR PRO LYS SEQRES 12 A 309 ILE GLY SER ILE GLY LEU HIS SER ILE THR GLU ASN VAL SEQRES 13 A 309 HIS PRO ASN GLN GLN SER ARG PHE THR PRO VAL GLY VAL SEQRES 14 A 309 ALA GLN ASN GLU ASN THR PRO PHE GLN GLN TRP VAL LEU SEQRES 15 A 309 PRO HIS TYR ALA GLY ALA LEU ALA LEU ASN THR ASN LEU SEQRES 16 A 309 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLU LEU SEQRES 17 A 309 LEU PHE PHE ARG SER ARG VAL PRO CYS VAL GLN GLY LEU SEQRES 18 A 309 ARG GLY GLN ASP ALA PHE ILE ASP CYS LEU LEU PRO GLN SEQRES 19 A 309 GLU TRP VAL ASN HIS PHE TYR GLN GLU ALA ALA PRO SER SEQRES 20 A 309 GLN ALA ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP SEQRES 21 A 309 THR GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER SEQRES 22 A 309 GLY PHE ILE THR VAL SER HIS THR GLY ALA TYR PRO LEU SEQRES 23 A 309 VAL VAL PRO PRO ASN GLY HIS PHE ARG PHE ASP SER TRP SEQRES 24 A 309 VAL ASN GLN PHE TYR SER LEU ALA PRO MET SEQRES 1 B 309 THR LYS PRO PHE THR LEU PRO ILE LEU THR ILE SER GLU SEQRES 2 B 309 LEU THR ASN SER ARG PHE PRO ILE PRO ILE GLU GLN LEU SEQRES 3 B 309 TYR THR ALA PRO ASN GLU ASN ASN VAL VAL GLN CYS GLN SEQRES 4 B 309 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 B 309 THR GLN LEU LEU SER SER ALA VAL CYS SER TYR ARG GLY SEQRES 6 B 309 ARG THR VAL ALA ASN SER GLY ASP ASN TRP ASP GLN ASN SEQRES 7 B 309 LEU LEU GLN LEU THR TYR PRO SER GLY ALA SER TYR ASP SEQRES 8 B 309 PRO THR ASP GLU VAL PRO ALA PRO LEU GLY THR GLN ASP SEQRES 9 B 309 PHE SER GLY ILE LEU TYR GLY VAL LEU THR GLN ASP ASN SEQRES 10 B 309 VAL SER GLU GLY THR GLY GLU ALA LYS ASN ALA LYS GLY SEQRES 11 B 309 VAL TYR ILE SER THR THR SER GLY LYS PHE THR PRO LYS SEQRES 12 B 309 ILE GLY SER ILE GLY LEU HIS SER ILE THR GLU ASN VAL SEQRES 13 B 309 HIS PRO ASN GLN GLN SER ARG PHE THR PRO VAL GLY VAL SEQRES 14 B 309 ALA GLN ASN GLU ASN THR PRO PHE GLN GLN TRP VAL LEU SEQRES 15 B 309 PRO HIS TYR ALA GLY ALA LEU ALA LEU ASN THR ASN LEU SEQRES 16 B 309 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLU LEU SEQRES 17 B 309 LEU PHE PHE ARG SER ARG VAL PRO CYS VAL GLN GLY LEU SEQRES 18 B 309 ARG GLY GLN ASP ALA PHE ILE ASP CYS LEU LEU PRO GLN SEQRES 19 B 309 GLU TRP VAL ASN HIS PHE TYR GLN GLU ALA ALA PRO SER SEQRES 20 B 309 GLN ALA ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP SEQRES 21 B 309 THR GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER SEQRES 22 B 309 GLY PHE ILE THR VAL SER HIS THR GLY ALA TYR PRO LEU SEQRES 23 B 309 VAL VAL PRO PRO ASN GLY HIS PHE ARG PHE ASP SER TRP SEQRES 24 B 309 VAL ASN GLN PHE TYR SER LEU ALA PRO MET SEQRES 1 C 309 THR LYS PRO PHE THR LEU PRO ILE LEU THR ILE SER GLU SEQRES 2 C 309 LEU THR ASN SER ARG PHE PRO ILE PRO ILE GLU GLN LEU SEQRES 3 C 309 TYR THR ALA PRO ASN GLU ASN ASN VAL VAL GLN CYS GLN SEQRES 4 C 309 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 C 309 THR GLN LEU LEU SER SER ALA VAL CYS SER TYR ARG GLY SEQRES 6 C 309 ARG THR VAL ALA ASN SER GLY ASP ASN TRP ASP GLN ASN SEQRES 7 C 309 LEU LEU GLN LEU THR TYR PRO SER GLY ALA SER TYR ASP SEQRES 8 C 309 PRO THR ASP GLU VAL PRO ALA PRO LEU GLY THR GLN ASP SEQRES 9 C 309 PHE SER GLY ILE LEU TYR GLY VAL LEU THR GLN ASP ASN SEQRES 10 C 309 VAL SER GLU GLY THR GLY GLU ALA LYS ASN ALA LYS GLY SEQRES 11 C 309 VAL TYR ILE SER THR THR SER GLY LYS PHE THR PRO LYS SEQRES 12 C 309 ILE GLY SER ILE GLY LEU HIS SER ILE THR GLU ASN VAL SEQRES 13 C 309 HIS PRO ASN GLN GLN SER ARG PHE THR PRO VAL GLY VAL SEQRES 14 C 309 ALA GLN ASN GLU ASN THR PRO PHE GLN GLN TRP VAL LEU SEQRES 15 C 309 PRO HIS TYR ALA GLY ALA LEU ALA LEU ASN THR ASN LEU SEQRES 16 C 309 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLU LEU SEQRES 17 C 309 LEU PHE PHE ARG SER ARG VAL PRO CYS VAL GLN GLY LEU SEQRES 18 C 309 ARG GLY GLN ASP ALA PHE ILE ASP CYS LEU LEU PRO GLN SEQRES 19 C 309 GLU TRP VAL ASN HIS PHE TYR GLN GLU ALA ALA PRO SER SEQRES 20 C 309 GLN ALA ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP SEQRES 21 C 309 THR GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER SEQRES 22 C 309 GLY PHE ILE THR VAL SER HIS THR GLY ALA TYR PRO LEU SEQRES 23 C 309 VAL VAL PRO PRO ASN GLY HIS PHE ARG PHE ASP SER TRP SEQRES 24 C 309 VAL ASN GLN PHE TYR SER LEU ALA PRO MET SEQRES 1 D 309 THR LYS PRO PHE THR LEU PRO ILE LEU THR ILE SER GLU SEQRES 2 D 309 LEU THR ASN SER ARG PHE PRO ILE PRO ILE GLU GLN LEU SEQRES 3 D 309 TYR THR ALA PRO ASN GLU ASN ASN VAL VAL GLN CYS GLN SEQRES 4 D 309 ASN GLY ARG CYS THR LEU ASP GLY GLU LEU GLN GLY THR SEQRES 5 D 309 THR GLN LEU LEU SER SER ALA VAL CYS SER TYR ARG GLY SEQRES 6 D 309 ARG THR VAL ALA ASN SER GLY ASP ASN TRP ASP GLN ASN SEQRES 7 D 309 LEU LEU GLN LEU THR TYR PRO SER GLY ALA SER TYR ASP SEQRES 8 D 309 PRO THR ASP GLU VAL PRO ALA PRO LEU GLY THR GLN ASP SEQRES 9 D 309 PHE SER GLY ILE LEU TYR GLY VAL LEU THR GLN ASP ASN SEQRES 10 D 309 VAL SER GLU GLY THR GLY GLU ALA LYS ASN ALA LYS GLY SEQRES 11 D 309 VAL TYR ILE SER THR THR SER GLY LYS PHE THR PRO LYS SEQRES 12 D 309 ILE GLY SER ILE GLY LEU HIS SER ILE THR GLU ASN VAL SEQRES 13 D 309 HIS PRO ASN GLN GLN SER ARG PHE THR PRO VAL GLY VAL SEQRES 14 D 309 ALA GLN ASN GLU ASN THR PRO PHE GLN GLN TRP VAL LEU SEQRES 15 D 309 PRO HIS TYR ALA GLY ALA LEU ALA LEU ASN THR ASN LEU SEQRES 16 D 309 ALA PRO ALA VAL ALA PRO THR PHE PRO GLY GLU GLU LEU SEQRES 17 D 309 LEU PHE PHE ARG SER ARG VAL PRO CYS VAL GLN GLY LEU SEQRES 18 D 309 ARG GLY GLN ASP ALA PHE ILE ASP CYS LEU LEU PRO GLN SEQRES 19 D 309 GLU TRP VAL ASN HIS PHE TYR GLN GLU ALA ALA PRO SER SEQRES 20 D 309 GLN ALA ASP VAL ALA LEU ILE ARG TYR VAL ASN PRO ASP SEQRES 21 D 309 THR GLY ARG THR LEU PHE GLU ALA LYS LEU HIS ARG SER SEQRES 22 D 309 GLY PHE ILE THR VAL SER HIS THR GLY ALA TYR PRO LEU SEQRES 23 D 309 VAL VAL PRO PRO ASN GLY HIS PHE ARG PHE ASP SER TRP SEQRES 24 D 309 VAL ASN GLN PHE TYR SER LEU ALA PRO MET HET NAG E 1 15 HET GAL E 2 11 HET NAG F 1 15 HET GAL F 2 11 HET NAG G 1 15 HET GAL G 2 11 HET NAG H 1 15 HET GAL H 2 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 5 GAL 4(C6 H12 O6) FORMUL 9 HOH *1560(H2 O) HELIX 1 AA1 THR A 12 LEU A 16 5 5 HELIX 2 AA2 LEU A 58 VAL A 62 5 5 HELIX 3 AA3 SER A 121 GLY A 125 5 5 HELIX 4 AA4 THR A 143 ILE A 146 5 4 HELIX 5 AA5 PRO A 235 ALA A 246 1 12 HELIX 6 AA6 THR B 12 LEU B 16 5 5 HELIX 7 AA7 LEU B 58 VAL B 62 5 5 HELIX 8 AA8 SER B 121 GLY B 125 5 5 HELIX 9 AA9 THR B 143 ILE B 146 5 4 HELIX 10 AB1 PRO B 235 ALA B 246 1 12 HELIX 11 AB2 THR C 12 LEU C 16 5 5 HELIX 12 AB3 LEU C 58 VAL C 62 5 5 HELIX 13 AB4 SER C 121 GLY C 125 5 5 HELIX 14 AB5 THR C 143 ILE C 146 5 4 HELIX 15 AB6 PRO C 235 ALA C 246 1 12 HELIX 16 AB7 THR D 12 LEU D 16 5 5 HELIX 17 AB8 LEU D 58 VAL D 62 5 5 HELIX 18 AB9 SER D 121 GLY D 125 5 5 HELIX 19 AC1 THR D 143 ILE D 146 5 4 HELIX 20 AC2 PRO D 235 ALA D 246 1 12 SHEET 1 AA1 4 ALA A 228 CYS A 232 0 SHEET 2 AA1 4 GLU A 208 VAL A 217 -1 N VAL A 217 O ALA A 228 SHEET 3 AA1 4 GLN A 27 ALA A 31 -1 N GLN A 27 O ARG A 214 SHEET 4 AA1 4 TYR A 286 PRO A 287 -1 O TYR A 286 N THR A 30 SHEET 1 AA2 6 ALA A 228 CYS A 232 0 SHEET 2 AA2 6 GLU A 208 VAL A 217 -1 N VAL A 217 O ALA A 228 SHEET 3 AA2 6 PHE A 277 SER A 281 -1 O VAL A 280 N GLU A 209 SHEET 4 AA2 6 THR A 266 HIS A 273 -1 N HIS A 273 O PHE A 277 SHEET 5 AA2 6 VAL A 253 VAL A 259 -1 N ALA A 254 O LEU A 272 SHEET 6 AA2 6 HIS A 295 VAL A 302 -1 O SER A 300 N LEU A 255 SHEET 1 AA3 7 TYR A 65 ALA A 71 0 SHEET 2 AA3 7 ASN A 80 LEU A 84 -1 O GLN A 83 N ARG A 68 SHEET 3 AA3 7 SER A 148 THR A 155 -1 O LEU A 151 N ASN A 80 SHEET 4 AA3 7 LYS A 131 SER A 136 -1 N GLY A 132 O ILE A 154 SHEET 5 AA3 7 ILE A 110 THR A 116 -1 N LEU A 115 O LYS A 131 SHEET 6 AA3 7 GLN A 163 ALA A 172 -1 O GLY A 170 N TYR A 112 SHEET 7 AA3 7 TYR A 65 ALA A 71 -1 N GLY A 67 O SER A 164 SHEET 1 AA4 4 ALA B 228 CYS B 232 0 SHEET 2 AA4 4 GLU B 208 VAL B 217 -1 N VAL B 217 O ALA B 228 SHEET 3 AA4 4 GLN B 27 ALA B 31 -1 N TYR B 29 O PHE B 212 SHEET 4 AA4 4 TYR B 286 PRO B 287 -1 O TYR B 286 N THR B 30 SHEET 1 AA5 6 ALA B 228 CYS B 232 0 SHEET 2 AA5 6 GLU B 208 VAL B 217 -1 N VAL B 217 O ALA B 228 SHEET 3 AA5 6 PHE B 277 SER B 281 -1 O VAL B 280 N GLU B 209 SHEET 4 AA5 6 THR B 266 HIS B 273 -1 N HIS B 273 O PHE B 277 SHEET 5 AA5 6 VAL B 253 VAL B 259 -1 N ALA B 254 O LEU B 272 SHEET 6 AA5 6 HIS B 295 VAL B 302 -1 O ASP B 299 N LEU B 255 SHEET 1 AA6 7 TYR B 65 ALA B 71 0 SHEET 2 AA6 7 ASN B 80 LEU B 84 -1 O GLN B 83 N ARG B 68 SHEET 3 AA6 7 SER B 148 SER B 153 -1 O LEU B 151 N ASN B 80 SHEET 4 AA6 7 LYS B 131 SER B 136 -1 N TYR B 134 O HIS B 152 SHEET 5 AA6 7 ILE B 110 THR B 116 -1 N LEU B 115 O LYS B 131 SHEET 6 AA6 7 GLN B 163 ALA B 172 -1 O GLY B 170 N TYR B 112 SHEET 7 AA6 7 TYR B 65 ALA B 71 -1 N TYR B 65 O PHE B 166 SHEET 1 AA7 4 ALA C 228 CYS C 232 0 SHEET 2 AA7 4 GLU C 208 VAL C 217 -1 N VAL C 217 O ALA C 228 SHEET 3 AA7 4 GLN C 27 ALA C 31 -1 N TYR C 29 O PHE C 212 SHEET 4 AA7 4 TYR C 286 PRO C 287 -1 O TYR C 286 N THR C 30 SHEET 1 AA8 6 ALA C 228 CYS C 232 0 SHEET 2 AA8 6 GLU C 208 VAL C 217 -1 N VAL C 217 O ALA C 228 SHEET 3 AA8 6 PHE C 277 SER C 281 -1 O VAL C 280 N GLU C 209 SHEET 4 AA8 6 THR C 266 HIS C 273 -1 N HIS C 273 O PHE C 277 SHEET 5 AA8 6 VAL C 253 VAL C 259 -1 N TYR C 258 O LEU C 267 SHEET 6 AA8 6 HIS C 295 VAL C 302 -1 O ASP C 299 N LEU C 255 SHEET 1 AA9 7 TYR C 65 ALA C 71 0 SHEET 2 AA9 7 ASN C 80 LEU C 84 -1 O GLN C 83 N ARG C 68 SHEET 3 AA9 7 SER C 148 SER C 153 -1 O ILE C 149 N LEU C 82 SHEET 4 AA9 7 LYS C 131 SER C 136 -1 N TYR C 134 O HIS C 152 SHEET 5 AA9 7 ILE C 110 THR C 116 -1 N LEU C 115 O LYS C 131 SHEET 6 AA9 7 GLN C 163 ALA C 172 -1 O VAL C 169 N TYR C 112 SHEET 7 AA9 7 TYR C 65 ALA C 71 -1 N GLY C 67 O SER C 164 SHEET 1 AB1 4 PHE D 229 CYS D 232 0 SHEET 2 AB1 4 GLU D 208 ARG D 216 -1 N PHE D 213 O CYS D 232 SHEET 3 AB1 4 GLN D 27 ALA D 31 -1 N TYR D 29 O PHE D 212 SHEET 4 AB1 4 TYR D 286 PRO D 287 -1 O TYR D 286 N THR D 30 SHEET 1 AB2 6 PHE D 229 CYS D 232 0 SHEET 2 AB2 6 GLU D 208 ARG D 216 -1 N PHE D 213 O CYS D 232 SHEET 3 AB2 6 PHE D 277 SER D 281 -1 O VAL D 280 N GLU D 209 SHEET 4 AB2 6 ARG D 265 HIS D 273 -1 N LYS D 271 O THR D 279 SHEET 5 AB2 6 VAL D 253 ASN D 260 -1 N ALA D 254 O LEU D 272 SHEET 6 AB2 6 HIS D 295 VAL D 302 -1 O ASP D 299 N LEU D 255 SHEET 1 AB3 7 TYR D 65 ALA D 71 0 SHEET 2 AB3 7 ASN D 80 LEU D 84 -1 O GLN D 83 N ARG D 68 SHEET 3 AB3 7 SER D 148 SER D 153 -1 O ILE D 149 N LEU D 82 SHEET 4 AB3 7 LYS D 131 SER D 136 -1 N TYR D 134 O HIS D 152 SHEET 5 AB3 7 ILE D 110 THR D 116 -1 N LEU D 115 O LYS D 131 SHEET 6 AB3 7 GLN D 163 ALA D 172 -1 O GLY D 170 N TYR D 112 SHEET 7 AB3 7 TYR D 65 ALA D 71 -1 N TYR D 65 O PHE D 166 LINK O3 NAG E 1 C1 GAL E 2 1555 1555 1.44 LINK O3 NAG F 1 C1 GAL F 2 1555 1555 1.44 LINK O3 NAG G 1 C1 GAL G 2 1555 1555 1.44 LINK O3 NAG H 1 C1 GAL H 2 1555 1555 1.44 CISPEP 1 GLY A 74 ASP A 75 0 -3.52 CRYST1 69.936 122.935 83.280 90.00 90.07 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014299 0.000000 0.000016 0.00000 SCALE2 0.000000 0.008134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012008 0.00000