HEADER OXIDOREDUCTASE 28-APR-19 6JYU TITLE CRYSTAL STRUCTURE OF HUMAN G6PD CANTON COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: G6PD; COMPND 5 EC: 1.1.1.49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: G6PD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DF213 KEYWDS G6PD DEFICIENCY, HEMOLYTIC ANEMIA, OXIDATIVE STRESS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.N.AU REVDAT 2 27-MAR-24 6JYU 1 REMARK REVDAT 1 29-APR-20 6JYU 0 JRNL AUTH S.W.N.AU JRNL TITL CRYSTAL STRUCTURE OF HUMAN G6PD CANTON JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.W.N.AU,H.ZHANG,K.SUN,P.ENGEL,M.MIGAUD REMARK 1 TITL HUMAN GLUCOSE-6-PHOSPHATE DEHYDROGENASE: THE CRYSTAL REMARK 1 TITL 2 STRUCTURE REVEALS A STRUCTURAL NADP(+) MOLECULE AND PROVIDES REMARK 1 TITL 3 INSIGHTS INTO ENZYME DEFICIENCY REMARK 1 REF STRUCTURE V. 8 293 2000 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 10745013 REMARK 1 DOI 10.1016/S0969-2126(00)00104-0 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 44443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.2100 - 4.5600 0.94 3020 143 0.1668 0.1718 REMARK 3 2 4.5600 - 3.6200 0.97 3026 142 0.1334 0.1768 REMARK 3 3 3.6200 - 3.1600 1.00 3079 145 0.1447 0.1727 REMARK 3 4 3.1600 - 2.8800 1.00 3075 144 0.1544 0.1936 REMARK 3 5 2.8800 - 2.6700 1.00 3078 146 0.1562 0.2045 REMARK 3 6 2.6700 - 2.5100 1.00 3035 143 0.1519 0.1762 REMARK 3 7 2.5100 - 2.3900 1.00 3078 145 0.1556 0.2047 REMARK 3 8 2.3900 - 2.2800 1.00 3035 143 0.1520 0.1909 REMARK 3 9 2.2800 - 2.1900 1.00 3045 143 0.1503 0.2031 REMARK 3 10 2.1900 - 2.1200 1.00 3058 144 0.1579 0.2198 REMARK 3 11 2.1200 - 2.0500 1.00 3029 143 0.1632 0.2321 REMARK 3 12 2.0500 - 1.9900 1.00 3028 144 0.1640 0.2183 REMARK 3 13 1.9900 - 1.9400 1.00 3029 142 0.1751 0.2219 REMARK 3 14 1.9400 - 1.8900 0.94 2828 133 0.1890 0.2305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.187 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.881 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4082 REMARK 3 ANGLE : 0.851 5533 REMARK 3 CHIRALITY : 0.056 588 REMARK 3 PLANARITY : 0.005 715 REMARK 3 DIHEDRAL : 4.849 2425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2472 34.2823 42.6955 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.1005 REMARK 3 T33: 0.0789 T12: -0.0131 REMARK 3 T13: 0.0211 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 1.8860 L22: 1.9417 REMARK 3 L33: 2.0274 L12: -0.7241 REMARK 3 L13: 0.5351 L23: -0.7737 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.0862 S13: 0.1861 REMARK 3 S21: 0.0734 S22: -0.0110 S23: -0.1124 REMARK 3 S31: -0.1364 S32: 0.1426 S33: 0.0441 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1923 17.7623 43.9042 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.1248 REMARK 3 T33: 0.1294 T12: 0.0070 REMARK 3 T13: 0.0093 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.1468 L22: 1.2258 REMARK 3 L33: 1.6028 L12: -0.4606 REMARK 3 L13: -0.1638 L23: 0.3958 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.1415 S13: -0.1354 REMARK 3 S21: 0.0751 S22: 0.0440 S23: -0.1718 REMARK 3 S31: 0.1741 S32: 0.1885 S33: -0.0302 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7031 14.4971 18.5352 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.0945 REMARK 3 T33: 0.1197 T12: -0.0067 REMARK 3 T13: -0.0009 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.4824 L22: 0.3599 REMARK 3 L33: 1.3027 L12: -0.1511 REMARK 3 L13: -0.5046 L23: 0.4762 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0032 S13: -0.0057 REMARK 3 S21: -0.0059 S22: 0.0154 S23: 0.0199 REMARK 3 S31: -0.0285 S32: 0.0239 S33: -0.0189 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9806 18.0310 20.1572 REMARK 3 T TENSOR REMARK 3 T11: 0.1236 T22: 0.0943 REMARK 3 T33: 0.1357 T12: -0.0104 REMARK 3 T13: 0.0030 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.7839 L22: 0.8465 REMARK 3 L33: 0.7961 L12: 0.5968 REMARK 3 L13: 0.4085 L23: 0.2210 REMARK 3 S TENSOR REMARK 3 S11: 0.0126 S12: -0.0637 S13: 0.1498 REMARK 3 S21: 0.0839 S22: 0.0156 S23: -0.1080 REMARK 3 S31: -0.1200 S32: 0.1083 S33: -0.0309 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4670 22.3106 6.3719 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.1129 REMARK 3 T33: 0.1462 T12: -0.0071 REMARK 3 T13: 0.0108 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.2691 L22: 0.1774 REMARK 3 L33: 2.0372 L12: -0.0081 REMARK 3 L13: -0.1725 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0566 S13: 0.0866 REMARK 3 S21: -0.0295 S22: 0.0099 S23: -0.0546 REMARK 3 S31: -0.2552 S32: 0.0119 S33: -0.0319 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 455 THROUGH 513 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4329 17.2239 15.1579 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.1329 REMARK 3 T33: 0.1824 T12: -0.0072 REMARK 3 T13: 0.0205 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 1.0331 L22: 1.4197 REMARK 3 L33: 1.7218 L12: 0.5379 REMARK 3 L13: -0.2936 L23: -0.0346 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0261 S13: 0.0977 REMARK 3 S21: -0.0422 S22: 0.0485 S23: -0.1377 REMARK 3 S31: -0.1653 S32: 0.2333 S33: -0.0310 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300011970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 25.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 20% GLYCEROL ETHOXYLATE, REMARK 280 10% TETRAHYDROFURAN, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 86.41500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.76100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 86.41500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.76100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 86.41500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.76100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 86.41500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.76100 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.76100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 107.76100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.76100 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 107.76100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 86.41500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 86.41500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 86.41500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 30.21100 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 86.41500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 708 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 727 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 898 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 969 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1036 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1162 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1321 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 764 O HOH A 794 2.12 REMARK 500 O GLU A 170 O HOH A 701 2.12 REMARK 500 O HOH A 1173 O HOH A 1285 2.13 REMARK 500 O HOH A 1175 O HOH A 1285 2.14 REMARK 500 O HOH A 1167 O HOH A 1260 2.15 REMARK 500 OD1 ASN A 430 O HOH A 702 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 47 -51.43 -123.66 REMARK 500 ASN A 64 72.71 -100.10 REMARK 500 ILE A 162 -53.85 -122.83 REMARK 500 ASP A 176 -177.20 -170.31 REMARK 500 ASN A 262 -81.12 -106.94 REMARK 500 SER A 418 -159.02 -143.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 199 ASP A 200 149.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1322 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1323 DISTANCE = 6.30 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 601 DBREF 6JYU A 29 513 UNP P11413 G6PD_HUMAN 29 513 SEQADV 6JYU LEU A 459 UNP P11413 ARG 459 VARIANT SEQRES 1 A 485 SER ASP THR HIS ILE PHE ILE ILE MET GLY ALA SER GLY SEQRES 2 A 485 ASP LEU ALA LYS LYS LYS ILE TYR PRO THR ILE TRP TRP SEQRES 3 A 485 LEU PHE ARG ASP GLY LEU LEU PRO GLU ASN THR PHE ILE SEQRES 4 A 485 VAL GLY TYR ALA ARG SER ARG LEU THR VAL ALA ASP ILE SEQRES 5 A 485 ARG LYS GLN SER GLU PRO PHE PHE LYS ALA THR PRO GLU SEQRES 6 A 485 GLU LYS LEU LYS LEU GLU ASP PHE PHE ALA ARG ASN SER SEQRES 7 A 485 TYR VAL ALA GLY GLN TYR ASP ASP ALA ALA SER TYR GLN SEQRES 8 A 485 ARG LEU ASN SER HIS MET ASN ALA LEU HIS LEU GLY SER SEQRES 9 A 485 GLN ALA ASN ARG LEU PHE TYR LEU ALA LEU PRO PRO THR SEQRES 10 A 485 VAL TYR GLU ALA VAL THR LYS ASN ILE HIS GLU SER CYS SEQRES 11 A 485 MET SER GLN ILE GLY TRP ASN ARG ILE ILE VAL GLU LYS SEQRES 12 A 485 PRO PHE GLY ARG ASP LEU GLN SER SER ASP ARG LEU SER SEQRES 13 A 485 ASN HIS ILE SER SER LEU PHE ARG GLU ASP GLN ILE TYR SEQRES 14 A 485 ARG ILE ASP HIS TYR LEU GLY LYS GLU MET VAL GLN ASN SEQRES 15 A 485 LEU MET VAL LEU ARG PHE ALA ASN ARG ILE PHE GLY PRO SEQRES 16 A 485 ILE TRP ASN ARG ASP ASN ILE ALA CYS VAL ILE LEU THR SEQRES 17 A 485 PHE LYS GLU PRO PHE GLY THR GLU GLY ARG GLY GLY TYR SEQRES 18 A 485 PHE ASP GLU PHE GLY ILE ILE ARG ASP VAL MET GLN ASN SEQRES 19 A 485 HIS LEU LEU GLN MET LEU CYS LEU VAL ALA MET GLU LYS SEQRES 20 A 485 PRO ALA SER THR ASN SER ASP ASP VAL ARG ASP GLU LYS SEQRES 21 A 485 VAL LYS VAL LEU LYS CYS ILE SER GLU VAL GLN ALA ASN SEQRES 22 A 485 ASN VAL VAL LEU GLY GLN TYR VAL GLY ASN PRO ASP GLY SEQRES 23 A 485 GLU GLY GLU ALA THR LYS GLY TYR LEU ASP ASP PRO THR SEQRES 24 A 485 VAL PRO ARG GLY SER THR THR ALA THR PHE ALA ALA VAL SEQRES 25 A 485 VAL LEU TYR VAL GLU ASN GLU ARG TRP ASP GLY VAL PRO SEQRES 26 A 485 PHE ILE LEU ARG CYS GLY LYS ALA LEU ASN GLU ARG LYS SEQRES 27 A 485 ALA GLU VAL ARG LEU GLN PHE HIS ASP VAL ALA GLY ASP SEQRES 28 A 485 ILE PHE HIS GLN GLN CYS LYS ARG ASN GLU LEU VAL ILE SEQRES 29 A 485 ARG VAL GLN PRO ASN GLU ALA VAL TYR THR LYS MET MET SEQRES 30 A 485 THR LYS LYS PRO GLY MET PHE PHE ASN PRO GLU GLU SER SEQRES 31 A 485 GLU LEU ASP LEU THR TYR GLY ASN ARG TYR LYS ASN VAL SEQRES 32 A 485 LYS LEU PRO ASP ALA TYR GLU ARG LEU ILE LEU ASP VAL SEQRES 33 A 485 PHE CYS GLY SER GLN MET HIS PHE VAL ARG SER ASP GLU SEQRES 34 A 485 LEU LEU GLU ALA TRP ARG ILE PHE THR PRO LEU LEU HIS SEQRES 35 A 485 GLN ILE GLU LEU GLU LYS PRO LYS PRO ILE PRO TYR ILE SEQRES 36 A 485 TYR GLY SER ARG GLY PRO THR GLU ALA ASP GLU LEU MET SEQRES 37 A 485 LYS ARG VAL GLY PHE GLN TYR GLU GLY THR TYR LYS TRP SEQRES 38 A 485 VAL ASN PRO HIS HET NAP A 601 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 HOH *623(H2 O) HELIX 1 AA1 GLY A 41 LYS A 47 1 7 HELIX 2 AA2 LYS A 47 ASP A 58 1 12 HELIX 3 AA3 THR A 76 GLU A 85 1 10 HELIX 4 AA4 PRO A 86 PHE A 88 5 3 HELIX 5 AA5 THR A 91 GLU A 93 5 3 HELIX 6 AA6 GLU A 94 ARG A 104 1 11 HELIX 7 AA7 ASP A 114 ALA A 127 1 14 HELIX 8 AA8 PRO A 143 THR A 145 5 3 HELIX 9 AA9 VAL A 146 CYS A 158 1 13 HELIX 10 AB1 ASP A 176 SER A 189 1 14 HELIX 11 AB2 ARG A 192 ASP A 194 5 3 HELIX 12 AB3 ASP A 200 GLY A 204 5 5 HELIX 13 AB4 LYS A 205 ALA A 217 1 13 HELIX 14 AB5 ASN A 218 GLY A 222 5 5 HELIX 15 AB6 ARG A 246 ASP A 251 1 6 HELIX 16 AB7 PHE A 253 VAL A 259 1 7 HELIX 17 AB8 ASN A 262 MET A 273 1 12 HELIX 18 AB9 ASN A 280 LYS A 293 1 14 HELIX 19 AC1 GLN A 299 ASN A 301 5 3 HELIX 20 AC2 GLU A 315 LYS A 320 5 6 HELIX 21 AC3 GLY A 321 ASP A 325 5 5 HELIX 22 AC4 TYR A 424 TYR A 428 1 5 HELIX 23 AC5 ASP A 435 GLY A 447 1 13 HELIX 24 AC6 ARG A 454 LYS A 476 1 23 HELIX 25 AC7 PRO A 489 GLY A 500 1 12 SHEET 1 AA1 6 ASN A 105 ALA A 109 0 SHEET 2 AA1 6 THR A 65 ALA A 71 1 N GLY A 69 O VAL A 108 SHEET 3 AA1 6 HIS A 32 MET A 37 1 N PHE A 34 O PHE A 66 SHEET 4 AA1 6 ASN A 135 LEU A 140 1 O TYR A 139 N ILE A 35 SHEET 5 AA1 6 ASN A 165 VAL A 169 1 O ARG A 166 N PHE A 138 SHEET 6 AA1 6 ILE A 196 ARG A 198 1 O TYR A 197 N ILE A 167 SHEET 1 AA2 9 PRO A 415 THR A 423 0 SHEET 2 AA2 9 ALA A 399 LYS A 407 -1 N MET A 404 O SER A 418 SHEET 3 AA2 9 GLU A 389 GLN A 395 -1 N VAL A 391 O TYR A 401 SHEET 4 AA2 9 LYS A 366 PHE A 373 -1 N LEU A 371 O LEU A 390 SHEET 5 AA2 9 ILE A 230 LYS A 238 -1 N LYS A 238 O LYS A 366 SHEET 6 AA2 9 PRO A 353 GLY A 359 1 O ILE A 355 N VAL A 233 SHEET 7 AA2 9 PHE A 337 TYR A 343 -1 N VAL A 340 O LEU A 356 SHEET 8 AA2 9 VAL A 303 VAL A 309 -1 N VAL A 304 O ALA A 339 SHEET 9 AA2 9 ILE A 480 ILE A 483 1 O ILE A 480 N LEU A 305 CISPEP 1 LYS A 171 PRO A 172 0 2.88 CISPEP 2 GLN A 395 PRO A 396 0 -6.47 SITE 1 AC1 27 LYS A 238 GLU A 364 LYS A 366 ARG A 370 SITE 2 AC1 27 ARG A 393 ASN A 397 TYR A 401 LYS A 403 SITE 3 AC1 27 ASP A 421 THR A 423 ARG A 487 ASP A 493 SITE 4 AC1 27 PHE A 501 TYR A 503 TYR A 507 TRP A 509 SITE 5 AC1 27 HOH A 705 HOH A 710 HOH A 711 HOH A 716 SITE 6 AC1 27 HOH A 742 HOH A 771 HOH A 796 HOH A 843 SITE 7 AC1 27 HOH A 857 HOH A1043 HOH A1115 CRYST1 60.422 172.830 215.522 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016550 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004640 0.00000