HEADER TRANSCRIPTION/DNA 29-APR-19 6JYW TITLE CRYSTAL STRUCTURE OF THE TRANSCRIPTION REGULATOR CADR N81M MUTANT FROM TITLE 2 P. PUTIDA IN COMPLEX WITH CADMIUM(II) AND DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CD(II)/PB(II)-RESPONSIVE TRANSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*AP*CP*CP*CP*TP*AP*TP*AP*GP*TP*GP*GP*CP*TP*AP*CP*AP*GP*GP*GP*T)- COMPND 10 3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*TP*AP*CP*CP*CP*TP*GP*TP*AP*GP*CP*CP*AP*CP*TP*AP*TP*AP*GP*GP*GP*T)- COMPND 16 3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 ATCC: 47054; SOURCE 5 GENE: CADR, BIW19_10095, BL240_26950, EFK07_13565; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 11 ORGANISM_TAXID: 303; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 15 ORGANISM_TAXID: 303 KEYWDS CADR, MERR FAMILY, CADMIUM REGULATOR, TRANSCRIPTION, TRANSCRIPTION- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.C.LIU,H.CHEN REVDAT 2 22-NOV-23 6JYW 1 REMARK REVDAT 1 29-APR-20 6JYW 0 JRNL AUTH X.C.LIU,H.CHEN JRNL TITL CRYSTAL STRUCTURE OF THE TRANSCRIPTION REGULATOR CADR N81M JRNL TITL 2 MUTANT FROM P. PUTIDA IN COMPLEX WITH CADMIUM(II) AND DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1288 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2134 REMARK 3 NUCLEIC ACID ATOMS : 896 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.50000 REMARK 3 B22 (A**2) : -4.50000 REMARK 3 B33 (A**2) : 14.59000 REMARK 3 B12 (A**2) : -2.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.475 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.192 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3159 ; 0.009 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 2542 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4452 ; 1.383 ; 1.695 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5859 ; 1.235 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 266 ; 5.848 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;39.949 ;23.274 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;17.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2975 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 710 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1079 ; 6.228 ; 9.065 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1078 ; 6.225 ; 9.060 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1340 ; 9.386 ;13.562 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1341 ; 9.382 ;13.568 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2080 ; 8.262 ; 9.251 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2079 ; 8.262 ; 9.252 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3113 ;11.766 ;13.753 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3864 ;14.474 ;75.232 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3863 ;14.476 ;75.228 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 135 B 1 135 14698 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300011994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17117 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JGX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.89150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.89150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.89150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 114 REMARK 465 GLN A 115 REMARK 465 GLY A 116 REMARK 465 ALA A 117 REMARK 465 GLU A 137 REMARK 465 HIS A 138 REMARK 465 GLY A 146 REMARK 465 HIS A 147 REMARK 465 ALA B 114 REMARK 465 GLN B 115 REMARK 465 GLY B 116 REMARK 465 ALA B 117 REMARK 465 GLU B 137 REMARK 465 HIS B 138 REMARK 465 SER B 139 REMARK 465 HIS B 140 REMARK 465 VAL B 141 REMARK 465 GLY B 142 REMARK 465 ARG B 143 REMARK 465 SER B 144 REMARK 465 HIS B 145 REMARK 465 GLY B 146 REMARK 465 HIS B 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 83 CG CD1 CD2 REMARK 470 ILE A 88 CD1 REMARK 470 LEU A 101 CD1 CD2 REMARK 470 VAL A 106 CG1 CG2 REMARK 470 LEU A 108 CD1 CD2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LEU B 83 CG CD1 CD2 REMARK 470 ILE B 88 CD1 REMARK 470 LEU B 101 CD1 CD2 REMARK 470 LEU B 108 CD1 CD2 REMARK 470 VAL B 133 CG1 CG2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 3 C1' - O4' - C4' ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 134 -177.44 -60.72 REMARK 500 GLU A 135 50.06 -116.90 REMARK 500 PRO B 134 -172.11 -62.76 REMARK 500 GLU B 135 64.05 -111.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 201 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 62 OE1 REMARK 620 2 GLU A 62 OE2 56.6 REMARK 620 3 HIS A 87 ND1 103.9 107.3 REMARK 620 4 HIS A 90 ND1 92.6 139.2 105.7 REMARK 620 5 HIS A 140 NE2 137.8 90.4 111.4 99.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 202 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 112 SG REMARK 620 2 CYS A 119 SG 156.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1002 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 145 NE2 REMARK 620 2 GLU B 62 OE1 140.9 REMARK 620 3 GLU B 62 OE2 95.2 56.6 REMARK 620 4 HIS B 87 ND1 111.4 103.7 108.6 REMARK 620 5 HIS B 90 ND1 95.8 90.8 137.2 105.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B1001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 112 SG REMARK 620 2 CYS B 119 SG 153.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 1002 DBREF 6JYW A 1 147 UNP Q93TP7 Q93TP7_PSEPU 1 147 DBREF 6JYW B 1 147 UNP Q93TP7 Q93TP7_PSEPU 1 147 DBREF 6JYW C 1 22 PDB 6JYW 6JYW 1 22 DBREF 6JYW D 1 22 PDB 6JYW 6JYW 1 22 SEQADV 6JYW MET A 81 UNP Q93TP7 ASN 81 ENGINEERED MUTATION SEQADV 6JYW MET B 81 UNP Q93TP7 ASN 81 ENGINEERED MUTATION SEQRES 1 A 147 MET LYS ILE GLY GLU LEU ALA LYS ALA THR ASP CYS ALA SEQRES 2 A 147 VAL GLU THR ILE ARG TYR TYR GLU ARG GLU GLN LEU LEU SEQRES 3 A 147 PRO GLU PRO ALA ARG SER ASP GLY ASN TYR ARG LEU TYR SEQRES 4 A 147 THR GLN ALA HIS VAL GLU ARG LEU THR PHE ILE ARG ASN SEQRES 5 A 147 CYS ARG THR LEU ASP MET THR LEU ASP GLU ILE ARG SER SEQRES 6 A 147 LEU LEU ARG LEU ARG ASP SER PRO ASP ASP SER CYS GLY SEQRES 7 A 147 SER VAL MET ALA LEU ILE ASP GLU HIS ILE GLU HIS VAL SEQRES 8 A 147 GLN ALA ARG ILE ASP GLY LEU VAL ALA LEU GLN GLU GLN SEQRES 9 A 147 LEU VAL GLU LEU ARG ARG ARG CYS ASN ALA GLN GLY ALA SEQRES 10 A 147 GLU CYS ALA ILE LEU GLN GLN LEU GLU THR ASN GLY ALA SEQRES 11 A 147 VAL SER VAL PRO GLU THR GLU HIS SER HIS VAL GLY ARG SEQRES 12 A 147 SER HIS GLY HIS SEQRES 1 B 147 MET LYS ILE GLY GLU LEU ALA LYS ALA THR ASP CYS ALA SEQRES 2 B 147 VAL GLU THR ILE ARG TYR TYR GLU ARG GLU GLN LEU LEU SEQRES 3 B 147 PRO GLU PRO ALA ARG SER ASP GLY ASN TYR ARG LEU TYR SEQRES 4 B 147 THR GLN ALA HIS VAL GLU ARG LEU THR PHE ILE ARG ASN SEQRES 5 B 147 CYS ARG THR LEU ASP MET THR LEU ASP GLU ILE ARG SER SEQRES 6 B 147 LEU LEU ARG LEU ARG ASP SER PRO ASP ASP SER CYS GLY SEQRES 7 B 147 SER VAL MET ALA LEU ILE ASP GLU HIS ILE GLU HIS VAL SEQRES 8 B 147 GLN ALA ARG ILE ASP GLY LEU VAL ALA LEU GLN GLU GLN SEQRES 9 B 147 LEU VAL GLU LEU ARG ARG ARG CYS ASN ALA GLN GLY ALA SEQRES 10 B 147 GLU CYS ALA ILE LEU GLN GLN LEU GLU THR ASN GLY ALA SEQRES 11 B 147 VAL SER VAL PRO GLU THR GLU HIS SER HIS VAL GLY ARG SEQRES 12 B 147 SER HIS GLY HIS SEQRES 1 C 22 DA DA DC DC DC DT DA DT DA DG DT DG DG SEQRES 2 C 22 DC DT DA DC DA DG DG DG DT SEQRES 1 D 22 DT DA DC DC DC DT DG DT DA DG DC DC DA SEQRES 2 D 22 DC DT DA DT DA DG DG DG DT HET CD A 201 1 HET CD A 202 1 HET CD B1001 1 HET CD B1002 1 HETNAM CD CADMIUM ION FORMUL 5 CD 4(CD 2+) HELIX 1 AA1 LYS A 2 ASP A 11 1 10 HELIX 2 AA2 ALA A 13 GLU A 23 1 11 HELIX 3 AA3 THR A 40 LEU A 56 1 17 HELIX 4 AA4 THR A 59 SER A 72 1 14 HELIX 5 AA5 SER A 76 CYS A 112 1 37 HELIX 6 AA6 ALA A 120 GLU A 126 1 7 HELIX 7 AA7 LYS B 2 ASP B 11 1 10 HELIX 8 AA8 ALA B 13 GLU B 23 1 11 HELIX 9 AA9 THR B 40 LEU B 56 1 17 HELIX 10 AB1 THR B 59 SER B 72 1 14 HELIX 11 AB2 SER B 76 CYS B 112 1 37 HELIX 12 AB3 ALA B 120 GLU B 126 1 7 SHEET 1 AA1 2 ALA A 30 ARG A 31 0 SHEET 2 AA1 2 ARG A 37 LEU A 38 -1 O LEU A 38 N ALA A 30 SHEET 1 AA2 2 ALA B 30 ARG B 31 0 SHEET 2 AA2 2 ARG B 37 LEU B 38 -1 O LEU B 38 N ALA B 30 LINK OE1 GLU A 62 CD CD A 201 1555 1555 2.22 LINK OE2 GLU A 62 CD CD A 201 1555 1555 2.38 LINK ND1 HIS A 87 CD CD A 201 1555 1555 2.42 LINK ND1 HIS A 90 CD CD A 201 1555 1555 2.54 LINK SG CYS A 112 CD CD A 202 1555 1555 2.59 LINK SG CYS A 119 CD CD A 202 1555 1555 2.99 LINK NE2 HIS A 140 CD CD A 201 1555 1555 2.28 LINK NE2 HIS A 145 CD CD B1002 1555 1555 2.51 LINK OE1 GLU B 62 CD CD B1002 1555 1555 2.25 LINK OE2 GLU B 62 CD CD B1002 1555 1555 2.37 LINK ND1 HIS B 87 CD CD B1002 1555 1555 2.38 LINK ND1 HIS B 90 CD CD B1002 1555 1555 2.58 LINK SG CYS B 112 CD CD B1001 1555 1555 2.60 LINK SG CYS B 119 CD CD B1001 1555 1555 3.02 SITE 1 AC1 4 GLU A 62 HIS A 87 HIS A 90 HIS A 140 SITE 1 AC2 3 CYS A 112 CYS A 119 CYS B 77 SITE 1 AC3 3 CYS A 77 CYS B 112 CYS B 119 SITE 1 AC4 4 HIS A 145 GLU B 62 HIS B 87 HIS B 90 CRYST1 126.435 126.435 93.783 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007909 0.004566 0.000000 0.00000 SCALE2 0.000000 0.009133 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010663 0.00000