HEADER HYDROLASE 29-APR-19 6JYZ TITLE CRYSTAL STRUCTURE OF ENDOGALACTOCERAMIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SECRETED ENDOGLYCOSYLCERAMIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS HOAGII (STRAIN 103S); SOURCE 3 ORGANISM_TAXID: 685727; SOURCE 4 STRAIN: 103S; SOURCE 5 GENE: REQ_10740; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, ENDOGALACTOCERAMIDASE., HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.LIUQING,F.YAN REVDAT 5 22-NOV-23 6JYZ 1 REMARK REVDAT 4 25-MAR-20 6JYZ 1 JRNL REVDAT 3 11-DEC-19 6JYZ 1 JRNL REVDAT 2 09-OCT-19 6JYZ 1 JRNL REVDAT 1 02-OCT-19 6JYZ 0 JRNL AUTH L.CHEN,Q.CHANG,Q.YAN,G.YANG,Y.ZHANG,Y.FENG JRNL TITL STRUCTURE OF AN ENDOGALACTOSYLCERAMIDASE FROM RHODOCOCCUS JRNL TITL 2 HOAGII 103S REVEALS THE MOLECULAR BASIS OF ITS SUBSTRATE JRNL TITL 3 SPECIFICITY. JRNL REF J.STRUCT.BIOL. V. 208 07393 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31557527 JRNL DOI 10.1016/J.JSB.2019.09.010 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 113901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5972 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3484 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 63.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.3 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5J7Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M REMARK 280 HEPES/SODIUM HYDROXIDE PH 7.5 AND 30% (V/V) PEG 400, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.06400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.06400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.09800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.26000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.09800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.26000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.06400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.09800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.26000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.06400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.09800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.26000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 40 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1006 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1143 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1156 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1194 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1206 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 13 REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 VAL A 27 REMARK 465 PRO A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 HIS A 32 REMARK 465 MET A 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 927 O HOH A 1049 2.08 REMARK 500 O HOH A 964 O HOH A 1063 2.12 REMARK 500 O HOH A 745 O HOH A 1195 2.13 REMARK 500 O HOH A 905 O HOH A 1011 2.16 REMARK 500 O HOH A 909 O HOH A 1004 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 255 NE ARG A 255 CZ 0.084 REMARK 500 GLU A 434 CD GLU A 434 OE1 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 46 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 119 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLY A 150 C - N - CA ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 215 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 261 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU A 271 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 286 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 291 CG - CD - NE ANGL. DEV. = 13.6 DEGREES REMARK 500 MET A 362 CG - SD - CE ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG A 423 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 141 -57.30 74.73 REMARK 500 LEU A 156 -7.39 83.85 REMARK 500 TRP A 163 -111.56 -126.38 REMARK 500 ALA A 187 46.12 -92.35 REMARK 500 GLN A 203 19.14 58.97 REMARK 500 GLU A 234 63.56 32.66 REMARK 500 LEU A 396 -72.66 -139.50 REMARK 500 ALA A 480 48.21 -152.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1226 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1227 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A1228 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1229 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1230 DISTANCE = 6.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 DBREF1 6JYZ A 34 488 UNP A0A3S5Y3Q1_RHOH1 DBREF2 6JYZ A A0A3S5Y3Q1 34 488 SEQADV 6JYZ MET A 13 UNP A0A3S5Y3Q INITIATING METHIONINE SEQADV 6JYZ GLY A 14 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ SER A 15 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ SER A 16 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ HIS A 17 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ HIS A 18 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ HIS A 19 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ HIS A 20 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ HIS A 21 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ HIS A 22 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ SER A 23 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ SER A 24 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ GLY A 25 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ LEU A 26 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ VAL A 27 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ PRO A 28 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ ARG A 29 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ GLY A 30 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ SER A 31 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ HIS A 32 UNP A0A3S5Y3Q EXPRESSION TAG SEQADV 6JYZ MET A 33 UNP A0A3S5Y3Q EXPRESSION TAG SEQRES 1 A 476 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 476 LEU VAL PRO ARG GLY SER HIS MET LEU PRO ARG LEU THR SEQRES 3 A 476 VAL GLU ASP GLY ALA ILE LYS ASP VAL ASP GLY ARG THR SEQRES 4 A 476 VAL LEU LEU ARG GLY ALA ASN VAL ASN GLY LEU ASN ASP SEQRES 5 A 476 TYR ALA SER ASN GLY ALA GLY LEU PRO THR VAL ALA PRO SEQRES 6 A 476 LEU ASP ARG THR ASP PHE GLU ALA MET ALA ALA LEU GLY SEQRES 7 A 476 PHE ASP VAL VAL ARG LEU ASN ILE ALA TRP SER ALA LEU SEQRES 8 A 476 GLU PRO THR PRO GLY ALA PHE ASP ALA ALA TYR VAL ALA SEQRES 9 A 476 ARG ILE ARG GLU ALA VAL GLN ASP ALA LYS ASP ASN GLY SEQRES 10 A 476 ILE TYR THR VAL LEU ASP MET HIS GLN ASP ALA TRP GLY SEQRES 11 A 476 PRO TYR VAL GLY THR PRO GLU GLY GLN ASP CYS PRO PRO SEQRES 12 A 476 LEU LEU GLN ARG GLY ILE GLY TRP ASP GLY ALA PRO GLU SEQRES 13 A 476 TRP ALA THR LEU THR GLY GLY TRP THR THR CYS ASN ILE SEQRES 14 A 476 GLY GLY GLN ARG GLU ALA SER PRO ALA VAL ALA ARG ALA SEQRES 15 A 476 PHE GLN ALA PHE TYR ASP ASP GLU GLN GLY VAL GLN GLY SEQRES 16 A 476 HIS LEU VAL GLN THR TRP ALA ARG LEU ALA ALA GLU PHE SEQRES 17 A 476 ARG ASN GLU PRO ALA VAL VAL GLY TYR ASP LEU LEU ASN SEQRES 18 A 476 GLU PRO ASN PRO GLY LEU ARG ASP PRO PHE ALA ALA ALA SEQRES 19 A 476 ASP GLN ILE GLY ARG PHE TYR GLN ARG ALA ILE ALA ALA SEQRES 20 A 476 ILE ARG GLN ALA GLU THR GLY GLY PHE PRO HIS LEU VAL SEQRES 21 A 476 ILE PHE GLU PRO SER ALA LEU TRP SER ALA PHE GLY PHE SEQRES 22 A 476 ASP ALA LEU PRO PRO ARG HIS TYR LEU ALA ASP PRO LEU SEQRES 23 A 476 VAL VAL PHE SER PRO HIS LEU TYR SER GLN SER ILE ASN SEQRES 24 A 476 VAL SER SER GLU PHE PRO SER ILE GLU ASP GLY PHE ARG SEQRES 25 A 476 ILE ALA VAL ALA ALA ALA ASP TRP TYR GLY ALA PRO LEU SEQRES 26 A 476 TRP THR GLY GLU TRP GLY TRP PHE GLY ASP PRO ASP GLU SEQRES 27 A 476 GLN ALA GLY GLN VAL ARG ARG PHE VAL ASP ALA MET ASN SEQRES 28 A 476 THR HIS ARG ILE GLY GLY ALA TRP TRP SER TRP THR GLN SEQRES 29 A 476 ALA CYS GLY ASP PRO HIS ALA VAL LYS ASP GLY ASN THR SEQRES 30 A 476 ALA GLU PRO GLN GLY ASN LEU ASN ARG ILE ASP CYS PRO SEQRES 31 A 476 SER GLY GLU GLU GLN GLY LEU VAL GLU GLY PHE ALA GLU SEQRES 32 A 476 GLN LEU ALA ARG ALA TYR PRO ARG ALA ALA PRO GLY LEU SEQRES 33 A 476 THR GLU VAL ALA THR GLU GLY PHE ARG GLY ASP GLY SER SEQRES 34 A 476 GLY ARG ILE GLU ALA TRP TYR PRO GLY ALA GLU ARG PRO SEQRES 35 A 476 GLN LEU ASP THR VAL ASN VAL ALA ASP VAL ALA LEU THR SEQRES 36 A 476 ARG VAL ASP GLY GLY TRP ARG LEU ILE GLY GLU ALA ALA SEQRES 37 A 476 GLY GLU TYR SER VAL THR THR LEU HET PE4 A 501 24 HET IPA A 502 4 HET IPA A 503 4 HET EDO A 504 4 HET EDO A 505 4 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM IPA ISOPROPYL ALCOHOL HETNAM EDO 1,2-ETHANEDIOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN IPA 2-PROPANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PE4 C16 H34 O8 FORMUL 3 IPA 2(C3 H8 O) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *630(H2 O) HELIX 1 AA1 ASP A 79 ALA A 88 1 10 HELIX 2 AA2 ALA A 99 GLU A 104 1 6 HELIX 3 AA3 ASP A 111 ASN A 128 1 18 HELIX 4 AA4 PRO A 167 THR A 171 5 5 HELIX 5 AA5 SER A 188 ASP A 200 1 13 HELIX 6 AA6 ASP A 201 GLN A 203 5 3 HELIX 7 AA7 GLY A 204 GLU A 219 1 16 HELIX 8 AA8 ASP A 241 GLU A 264 1 24 HELIX 9 AA9 LEU A 279 GLY A 284 1 6 HELIX 10 AB1 PRO A 290 ALA A 295 5 6 HELIX 11 AB2 SER A 318 GLY A 334 1 17 HELIX 12 AB3 ASP A 347 ARG A 366 1 20 HELIX 13 AB4 ASP A 380 GLY A 387 1 8 HELIX 14 AB5 VAL A 410 ALA A 418 1 9 SHEET 1 AA1 2 LEU A 37 GLU A 40 0 SHEET 2 AA1 2 ALA A 43 ASP A 46 -1 O LYS A 45 N THR A 38 SHEET 1 AA2 5 ARG A 50 VAL A 52 0 SHEET 2 AA2 5 TYR A 421 PRO A 426 -1 O ALA A 425 N THR A 51 SHEET 3 AA2 5 GLY A 435 PRO A 449 -1 O GLU A 445 N ALA A 424 SHEET 4 AA2 5 GLY A 472 THR A 487 -1 O ALA A 479 N GLY A 442 SHEET 5 AA2 5 LEU A 456 VAL A 459 -1 N ASP A 457 O THR A 486 SHEET 1 AA3 4 LEU A 428 ALA A 432 0 SHEET 2 AA3 4 GLY A 435 PRO A 449 -1 O GLY A 435 N ALA A 432 SHEET 3 AA3 4 GLY A 472 THR A 487 -1 O ALA A 479 N GLY A 442 SHEET 4 AA3 4 ALA A 462 VAL A 469 -1 N ALA A 462 O GLU A 478 SHEET 1 AA4 8 VAL A 299 PHE A 301 0 SHEET 2 AA4 8 LEU A 271 PHE A 274 1 N PHE A 274 O VAL A 300 SHEET 3 AA4 8 VAL A 226 ASP A 230 1 N TYR A 229 O ILE A 273 SHEET 4 AA4 8 TYR A 131 MET A 136 1 N LEU A 134 O ASP A 230 SHEET 5 AA4 8 VAL A 93 ILE A 98 1 N VAL A 94 O VAL A 133 SHEET 6 AA4 8 ARG A 55 VAL A 59 1 N VAL A 59 O ARG A 95 SHEET 7 AA4 8 GLY A 368 TRP A 371 1 O TRP A 371 N ASN A 58 SHEET 8 AA4 8 TRP A 338 TRP A 342 1 N THR A 339 O ALA A 370 SHEET 1 AA5 2 ASN A 397 ILE A 399 0 SHEET 2 AA5 2 GLU A 406 LEU A 409 -1 O GLN A 407 N ARG A 398 SSBOND 1 CYS A 153 CYS A 179 1555 1555 2.12 SSBOND 2 CYS A 378 CYS A 401 1555 1555 2.09 CISPEP 1 PHE A 316 PRO A 317 0 -8.25 CISPEP 2 TRP A 372 SER A 373 0 3.14 CISPEP 3 CYS A 401 PRO A 402 0 4.58 SITE 1 AC1 12 ILE A 181 GLN A 184 ALA A 187 PRO A 242 SITE 2 AC1 12 PHE A 283 PHE A 285 ASP A 286 ALA A 287 SITE 3 AC1 12 VAL A 312 HOH A 643 HOH A1046 HOH A1110 SITE 1 AC2 2 ARG A 423 GLU A 445 SITE 1 AC3 2 ASP A 286 HOH A 911 SITE 1 AC4 7 PHE A 110 ALA A 116 ARG A 215 HOH A 698 SITE 2 AC4 7 HOH A 717 HOH A 864 HOH A 914 SITE 1 AC5 4 GLU A 430 GLY A 435 ARG A 437 THR A 486 CRYST1 76.196 114.520 128.128 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013124 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007805 0.00000