HEADER PROTEIN BINDING 02-MAY-19 6JZN TITLE STRUCTURE OF THE INTERMEMBRANE SPACE REGION OF PARC6-PDV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC; COMPND 3 CHAIN: C, B, D, A; COMPND 4 SYNONYM: ARC6-HOMOLOG PROTEIN,PROTEIN CHLOROPLAST DIVISION SITE COMPND 5 POSITIONING 1,ATCDP1,PROTEIN PARALOG OF ARC6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE FROM PLASTID DIVISION PROTEIN PDV1; COMPND 9 CHAIN: G, F, H, E; COMPND 10 SYNONYM: PROTEIN PLASTID DIVISION1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CDP1, ARC6H, PARC6, AT3G19180, MVI11.9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 GENE: PDV1, AT5G53280, K19E1.8; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA STRUCTURE, INTERMEMBRANE SPACE, DIVISION MACHINERY, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.FENG,Z.LIU REVDAT 2 22-NOV-23 6JZN 1 REMARK REVDAT 1 06-MAY-20 6JZN 0 JRNL AUTH Y.FENG,Z.LIU JRNL TITL STRUCTURE OF PARC6 AND PDV1 COMPLEX FROM ARABIDOPSIS JRNL TITL 2 THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.930 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 18672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1486 - 5.5335 0.99 2790 137 0.2206 0.2394 REMARK 3 2 5.5335 - 4.3930 0.99 2661 140 0.1864 0.2340 REMARK 3 3 4.3930 - 3.8380 1.00 2663 143 0.2010 0.2441 REMARK 3 4 3.8380 - 3.4872 0.99 2606 141 0.2270 0.2857 REMARK 3 5 3.4872 - 3.2373 0.99 2632 154 0.2575 0.3314 REMARK 3 6 3.2373 - 3.0464 0.95 2489 125 0.2819 0.3559 REMARK 3 7 3.0464 - 2.8939 0.72 1873 119 0.2848 0.3065 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4688 REMARK 3 ANGLE : 1.260 6332 REMARK 3 CHIRALITY : 0.056 693 REMARK 3 PLANARITY : 0.008 808 REMARK 3 DIHEDRAL : 12.241 2828 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18678 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 49.142 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6JZF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, PHOSPHATE POTASSIUM, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.28300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.28300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.72700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.91350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.72700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.91350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 98.28300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.72700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.91350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.28300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.72700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.91350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 671 REMARK 465 GLY C 672 REMARK 465 SER C 673 REMARK 465 SER C 674 REMARK 465 HIS C 675 REMARK 465 HIS C 676 REMARK 465 HIS C 677 REMARK 465 HIS C 678 REMARK 465 HIS C 679 REMARK 465 HIS C 680 REMARK 465 SER C 681 REMARK 465 GLN C 682 REMARK 465 ASP C 683 REMARK 465 PRO C 684 REMARK 465 LYS C 685 REMARK 465 LYS C 819 REMARK 465 MET B 671 REMARK 465 GLY B 672 REMARK 465 SER B 673 REMARK 465 SER B 674 REMARK 465 HIS B 675 REMARK 465 HIS B 676 REMARK 465 HIS B 677 REMARK 465 HIS B 678 REMARK 465 HIS B 679 REMARK 465 HIS B 680 REMARK 465 SER B 681 REMARK 465 ASP B 683 REMARK 465 PRO B 684 REMARK 465 GLN B 818 REMARK 465 LYS B 819 REMARK 465 MET D 671 REMARK 465 GLY D 672 REMARK 465 SER D 673 REMARK 465 SER D 674 REMARK 465 HIS D 675 REMARK 465 HIS D 676 REMARK 465 HIS D 677 REMARK 465 HIS D 678 REMARK 465 HIS D 679 REMARK 465 HIS D 680 REMARK 465 SER D 681 REMARK 465 GLN D 682 REMARK 465 ASP D 683 REMARK 465 PRO D 684 REMARK 465 GLY D 761 REMARK 465 ILE D 762 REMARK 465 ALA D 763 REMARK 465 ILE D 817 REMARK 465 GLN D 818 REMARK 465 LYS D 819 REMARK 465 MET A 671 REMARK 465 GLY A 672 REMARK 465 SER A 673 REMARK 465 SER A 674 REMARK 465 HIS A 675 REMARK 465 HIS A 676 REMARK 465 HIS A 677 REMARK 465 HIS A 678 REMARK 465 HIS A 679 REMARK 465 HIS A 680 REMARK 465 SER A 681 REMARK 465 GLN A 682 REMARK 465 ASP A 683 REMARK 465 PRO A 684 REMARK 465 GLY A 761 REMARK 465 ILE A 762 REMARK 465 ALA A 763 REMARK 465 GLN A 818 REMARK 465 LYS A 819 REMARK 465 ASP G 263 REMARK 465 ASP F 263 REMARK 465 ASP E 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 682 CB CG CD OE1 NE2 REMARK 470 GLU D 759 CG CD OE1 OE2 REMARK 470 ASP D 760 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 695 OE1 GLN A 699 1.79 REMARK 500 O TYR D 715 OG SER D 718 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 685 C ARG A 686 N 0.200 REMARK 500 GLU A 782 CB GLU A 782 CG 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 686 CG - CD - NE ANGL. DEV. = 20.1 DEGREES REMARK 500 ARG C 686 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG C 686 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG C 686 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU B 695 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 GLN B 784 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 TYR D 715 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 TYR D 715 CB - CG - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 GLU D 782 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG A 686 CA - CB - CG ANGL. DEV. = -16.1 DEGREES REMARK 500 ARG A 686 CD - NE - CZ ANGL. DEV. = -9.6 DEGREES REMARK 500 ARG A 686 NE - CZ - NH1 ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 723 -156.18 58.57 REMARK 500 ASP C 760 53.94 -90.52 REMARK 500 ASP C 805 9.08 -162.36 REMARK 500 GLU B 723 -152.33 51.98 REMARK 500 ALA B 763 2.62 -67.62 REMARK 500 GLU D 723 151.24 -47.90 REMARK 500 SER D 724 -78.40 93.45 REMARK 500 GLU D 759 70.50 66.46 REMARK 500 SER D 783 -2.34 -59.46 REMARK 500 GLU A 723 -144.62 55.69 REMARK 500 ASP A 805 -168.70 -100.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS H 264 LEU H 265 -149.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D 715 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU D 782 -14.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6JZF RELATED DB: PDB REMARK 900 6JZF CONTAINS THE APO-PARC6 DBREF 6JZN C 685 819 UNP Q8VY16 CDP1_ARATH 685 819 DBREF 6JZN B 685 819 UNP Q8VY16 CDP1_ARATH 685 819 DBREF 6JZN D 685 819 UNP Q8VY16 CDP1_ARATH 685 819 DBREF 6JZN A 685 819 UNP Q8VY16 CDP1_ARATH 685 819 DBREF 6JZN G 263 272 UNP Q9FK13 PDV1_ARATH 263 272 DBREF 6JZN F 263 272 UNP Q9FK13 PDV1_ARATH 263 272 DBREF 6JZN H 263 272 UNP Q9FK13 PDV1_ARATH 263 272 DBREF 6JZN E 263 272 UNP Q9FK13 PDV1_ARATH 263 272 SEQADV 6JZN MET C 671 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLY C 672 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER C 673 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER C 674 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS C 675 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS C 676 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS C 677 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS C 678 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS C 679 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS C 680 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER C 681 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLN C 682 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN ASP C 683 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN PRO C 684 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN MET B 671 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLY B 672 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER B 673 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER B 674 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS B 675 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS B 676 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS B 677 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS B 678 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS B 679 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS B 680 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER B 681 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLN B 682 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN ASP B 683 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN PRO B 684 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN MET D 671 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLY D 672 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER D 673 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER D 674 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS D 675 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS D 676 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS D 677 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS D 678 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS D 679 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS D 680 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER D 681 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLN D 682 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN ASP D 683 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN PRO D 684 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN MET A 671 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLY A 672 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER A 673 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER A 674 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS A 675 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS A 676 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS A 677 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS A 678 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS A 679 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN HIS A 680 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN SER A 681 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN GLN A 682 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN ASP A 683 UNP Q8VY16 EXPRESSION TAG SEQADV 6JZN PRO A 684 UNP Q8VY16 EXPRESSION TAG SEQRES 1 C 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 C 149 PRO LYS ARG PRO MET ASP THR GLU GLU ALA GLU GLU LEU SEQRES 3 C 149 VAL ARG GLN TRP GLU ASN VAL LYS ALA GLU ALA LEU GLY SEQRES 4 C 149 PRO THR HIS GLN VAL TYR SER LEU SER GLU VAL LEU ASP SEQRES 5 C 149 GLU SER MET LEU VAL GLN TRP GLN THR LEU ALA GLN THR SEQRES 6 C 149 ALA GLU ALA LYS SER CYS TYR TRP ARG PHE VAL LEU LEU SEQRES 7 C 149 HIS LEU GLU VAL LEU GLN ALA HIS ILE PHE GLU ASP GLY SEQRES 8 C 149 ILE ALA GLY GLU ALA ALA GLU ILE GLU ALA LEU LEU GLU SEQRES 9 C 149 GLU ALA ALA GLU LEU VAL ASP GLU SER GLN PRO LYS ASN SEQRES 10 C 149 ALA LYS TYR TYR SER THR TYR LYS ILE ARG TYR ILE LEU SEQRES 11 C 149 LYS LYS GLN GLU ASP GLY LEU TRP LYS PHE CYS GLN SER SEQRES 12 C 149 ASP ILE GLN ILE GLN LYS SEQRES 1 B 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 B 149 PRO LYS ARG PRO MET ASP THR GLU GLU ALA GLU GLU LEU SEQRES 3 B 149 VAL ARG GLN TRP GLU ASN VAL LYS ALA GLU ALA LEU GLY SEQRES 4 B 149 PRO THR HIS GLN VAL TYR SER LEU SER GLU VAL LEU ASP SEQRES 5 B 149 GLU SER MET LEU VAL GLN TRP GLN THR LEU ALA GLN THR SEQRES 6 B 149 ALA GLU ALA LYS SER CYS TYR TRP ARG PHE VAL LEU LEU SEQRES 7 B 149 HIS LEU GLU VAL LEU GLN ALA HIS ILE PHE GLU ASP GLY SEQRES 8 B 149 ILE ALA GLY GLU ALA ALA GLU ILE GLU ALA LEU LEU GLU SEQRES 9 B 149 GLU ALA ALA GLU LEU VAL ASP GLU SER GLN PRO LYS ASN SEQRES 10 B 149 ALA LYS TYR TYR SER THR TYR LYS ILE ARG TYR ILE LEU SEQRES 11 B 149 LYS LYS GLN GLU ASP GLY LEU TRP LYS PHE CYS GLN SER SEQRES 12 B 149 ASP ILE GLN ILE GLN LYS SEQRES 1 D 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 D 149 PRO LYS ARG PRO MET ASP THR GLU GLU ALA GLU GLU LEU SEQRES 3 D 149 VAL ARG GLN TRP GLU ASN VAL LYS ALA GLU ALA LEU GLY SEQRES 4 D 149 PRO THR HIS GLN VAL TYR SER LEU SER GLU VAL LEU ASP SEQRES 5 D 149 GLU SER MET LEU VAL GLN TRP GLN THR LEU ALA GLN THR SEQRES 6 D 149 ALA GLU ALA LYS SER CYS TYR TRP ARG PHE VAL LEU LEU SEQRES 7 D 149 HIS LEU GLU VAL LEU GLN ALA HIS ILE PHE GLU ASP GLY SEQRES 8 D 149 ILE ALA GLY GLU ALA ALA GLU ILE GLU ALA LEU LEU GLU SEQRES 9 D 149 GLU ALA ALA GLU LEU VAL ASP GLU SER GLN PRO LYS ASN SEQRES 10 D 149 ALA LYS TYR TYR SER THR TYR LYS ILE ARG TYR ILE LEU SEQRES 11 D 149 LYS LYS GLN GLU ASP GLY LEU TRP LYS PHE CYS GLN SER SEQRES 12 D 149 ASP ILE GLN ILE GLN LYS SEQRES 1 A 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 149 PRO LYS ARG PRO MET ASP THR GLU GLU ALA GLU GLU LEU SEQRES 3 A 149 VAL ARG GLN TRP GLU ASN VAL LYS ALA GLU ALA LEU GLY SEQRES 4 A 149 PRO THR HIS GLN VAL TYR SER LEU SER GLU VAL LEU ASP SEQRES 5 A 149 GLU SER MET LEU VAL GLN TRP GLN THR LEU ALA GLN THR SEQRES 6 A 149 ALA GLU ALA LYS SER CYS TYR TRP ARG PHE VAL LEU LEU SEQRES 7 A 149 HIS LEU GLU VAL LEU GLN ALA HIS ILE PHE GLU ASP GLY SEQRES 8 A 149 ILE ALA GLY GLU ALA ALA GLU ILE GLU ALA LEU LEU GLU SEQRES 9 A 149 GLU ALA ALA GLU LEU VAL ASP GLU SER GLN PRO LYS ASN SEQRES 10 A 149 ALA LYS TYR TYR SER THR TYR LYS ILE ARG TYR ILE LEU SEQRES 11 A 149 LYS LYS GLN GLU ASP GLY LEU TRP LYS PHE CYS GLN SER SEQRES 12 A 149 ASP ILE GLN ILE GLN LYS SEQRES 1 G 10 ASP HIS LEU ASP VAL MET MET ALA ARG GLY SEQRES 1 F 10 ASP HIS LEU ASP VAL MET MET ALA ARG GLY SEQRES 1 H 10 ASP HIS LEU ASP VAL MET MET ALA ARG GLY SEQRES 1 E 10 ASP HIS LEU ASP VAL MET MET ALA ARG GLY HELIX 1 AA1 ASP C 689 GLY C 709 1 21 HELIX 2 AA2 SER C 716 LEU C 721 1 6 HELIX 3 AA3 ASP C 722 LYS C 739 1 18 HELIX 4 AA4 GLY C 761 ALA C 763 5 3 HELIX 5 AA5 ASP B 689 LEU B 708 1 20 HELIX 6 AA6 SER B 716 LEU B 721 1 6 HELIX 7 AA7 ASP B 722 LYS B 739 1 18 HELIX 8 AA8 GLY B 761 ALA B 763 5 3 HELIX 9 AA9 ASP D 689 GLY D 709 1 21 HELIX 10 AB1 VAL D 714 LEU D 721 1 8 HELIX 11 AB2 SER D 724 LYS D 739 1 16 HELIX 12 AB3 ASP A 689 LEU A 708 1 20 HELIX 13 AB4 SER A 716 LEU A 721 1 6 HELIX 14 AB5 ASP A 722 LYS A 739 1 18 HELIX 15 AB6 ASP G 266 ARG G 271 5 6 HELIX 16 AB7 ASP F 266 ARG F 271 5 6 HELIX 17 AB8 ASP H 266 ARG H 271 5 6 HELIX 18 AB9 ASP E 266 ARG E 271 5 6 SHEET 1 AA1 4 TYR C 742 GLU C 759 0 SHEET 2 AA1 4 GLU C 765 VAL C 780 -1 O ALA C 766 N PHE C 758 SHEET 3 AA1 4 ALA C 788 LYS C 802 -1 O ALA C 788 N LEU C 779 SHEET 4 AA1 4 TRP C 808 ILE C 817 -1 O GLN C 816 N LYS C 795 SHEET 1 AA2 5 ARG B 686 PRO B 687 0 SHEET 2 AA2 5 TYR B 742 GLU B 759 -1 O ILE B 757 N ARG B 686 SHEET 3 AA2 5 GLU B 765 VAL B 780 -1 O LEU B 772 N GLU B 751 SHEET 4 AA2 5 ALA B 788 LYS B 802 -1 O TYR B 798 N ILE B 769 SHEET 5 AA2 5 TRP B 808 GLN B 816 -1 O CYS B 811 N ILE B 799 SHEET 1 AA3 5 ARG D 686 PRO D 687 0 SHEET 2 AA3 5 TYR D 742 PHE D 758 -1 O ILE D 757 N ARG D 686 SHEET 3 AA3 5 ALA D 766 VAL D 780 -1 O GLU D 770 N GLN D 754 SHEET 4 AA3 5 ALA D 788 LYS D 802 -1 O TYR D 790 N ALA D 777 SHEET 5 AA3 5 TRP D 808 ILE D 815 -1 O GLN D 812 N ILE D 799 SHEET 1 AA4 5 ARG A 686 PRO A 687 0 SHEET 2 AA4 5 TYR A 742 PHE A 758 -1 O ILE A 757 N ARG A 686 SHEET 3 AA4 5 ALA A 766 VAL A 780 -1 O GLU A 770 N LEU A 753 SHEET 4 AA4 5 ALA A 788 LYS A 802 -1 O TYR A 798 N ILE A 769 SHEET 5 AA4 5 TRP A 808 GLN A 816 -1 O CYS A 811 N ILE A 799 CRYST1 91.454 95.827 196.566 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005087 0.00000