HEADER CHAPERONE 05-MAY-19 6K00 TITLE CRYSTAL STRUCTURE A OF CENAP1-H2A-H2B COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSOME ASSEMBLY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H2B 1,HISTONE H2A; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: NAP-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 10 ORGANISM_TAXID: 6239; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS NAP1, H2A-H2B, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR Y.R.LIU REVDAT 2 27-MAR-24 6K00 1 REMARK REVDAT 1 09-OCT-19 6K00 0 JRNL AUTH Y.R.LIU JRNL TITL CRYSTAL STRUCTURE OF XLH2A-H2B JRNL REF STRUCTURE 2019 JRNL REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 46721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3635 - 5.5353 1.00 3025 143 0.1920 0.2160 REMARK 3 2 5.5353 - 4.3944 1.00 2880 148 0.1753 0.2065 REMARK 3 3 4.3944 - 3.8392 1.00 2839 161 0.1735 0.2024 REMARK 3 4 3.8392 - 3.4883 1.00 2818 154 0.1986 0.2205 REMARK 3 5 3.4883 - 3.2383 1.00 2819 154 0.2228 0.2271 REMARK 3 6 3.2383 - 3.0474 1.00 2803 144 0.2384 0.2802 REMARK 3 7 3.0474 - 2.8948 1.00 2806 133 0.2469 0.2969 REMARK 3 8 2.8948 - 2.7688 1.00 2798 142 0.2418 0.2987 REMARK 3 9 2.7688 - 2.6622 1.00 2787 149 0.2422 0.2835 REMARK 3 10 2.6622 - 2.5704 1.00 2800 136 0.2366 0.3006 REMARK 3 11 2.5704 - 2.4900 1.00 2780 120 0.2397 0.2789 REMARK 3 12 2.4900 - 2.4188 1.00 2792 140 0.2382 0.2700 REMARK 3 13 2.4188 - 2.3551 1.00 2770 131 0.2339 0.2744 REMARK 3 14 2.3551 - 2.2977 1.00 2796 151 0.2359 0.2591 REMARK 3 15 2.2977 - 2.2454 1.00 2744 158 0.2507 0.3070 REMARK 3 16 2.2454 - 2.1977 0.80 2180 120 0.2625 0.2917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 10 THROUGH 296) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5619 -19.1026 -30.6167 REMARK 3 T TENSOR REMARK 3 T11: 0.1763 T22: 0.1759 REMARK 3 T33: 0.2018 T12: -0.0276 REMARK 3 T13: 0.0054 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.0502 L22: 0.8589 REMARK 3 L33: 0.4755 L12: -0.2069 REMARK 3 L13: -0.0945 L23: 0.3342 REMARK 3 S TENSOR REMARK 3 S11: 0.0793 S12: 0.0337 S13: -0.0427 REMARK 3 S21: -0.0182 S22: -0.0629 S23: 0.0614 REMARK 3 S31: 0.0320 S32: 0.0209 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 4 THROUGH 294) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8501 7.5906 -24.9062 REMARK 3 T TENSOR REMARK 3 T11: 0.2693 T22: 0.2324 REMARK 3 T33: 0.2326 T12: -0.0217 REMARK 3 T13: -0.0188 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.2011 L22: 1.0976 REMARK 3 L33: 0.4386 L12: -0.4432 REMARK 3 L13: -0.2126 L23: 0.3749 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.0021 S13: -0.0246 REMARK 3 S21: 0.1181 S22: -0.0336 S23: -0.0801 REMARK 3 S31: -0.0347 S32: 0.0261 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 31 THROUGH 215) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5046 -20.6033 -7.8615 REMARK 3 T TENSOR REMARK 3 T11: 0.2260 T22: 0.3934 REMARK 3 T33: 0.3127 T12: -0.0362 REMARK 3 T13: -0.0234 T23: 0.1079 REMARK 3 L TENSOR REMARK 3 L11: 0.7130 L22: 1.0128 REMARK 3 L33: 1.5050 L12: -0.7570 REMARK 3 L13: 0.5344 L23: -0.9464 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.2308 S13: -0.2688 REMARK 3 S21: 0.0169 S22: 0.1492 S23: 0.1485 REMARK 3 S31: -0.0374 S32: 0.0261 S33: 0.0280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 10 THROUGH 80 OR REMARK 3 (RESID 81 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 82 REMARK 3 THROUGH 101 OR (RESID 102 THROUGH 104 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 105 THROUGH 216 OR REMARK 3 RESID 234 THROUGH 294)) REMARK 3 SELECTION : (CHAIN B AND (RESID 10 THROUGH 77 OR REMARK 3 (RESID 78 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 79 REMARK 3 THROUGH 92 OR (RESID 93 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 94 THROUGH 216 OR RESID 234 REMARK 3 THROUGH 247 OR RESID 260 THROUGH 263 OR REMARK 3 (RESID 264 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 265 REMARK 3 THROUGH 294)) REMARK 3 ATOM PAIRS NUMBER : 1532 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.198 REMARK 200 RESOLUTION RANGE LOW (A) : 49.351 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.14900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.69500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.36200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.69500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.14900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.36200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 TYR A 5 REMARK 465 PHE A 6 REMARK 465 GLN A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 LYS A 219 REMARK 465 LYS A 220 REMARK 465 GLN A 221 REMARK 465 LYS A 222 REMARK 465 LYS A 223 REMARK 465 GLY A 224 REMARK 465 ALA A 225 REMARK 465 ASN A 226 REMARK 465 ALA A 227 REMARK 465 GLY A 228 REMARK 465 LYS A 229 REMARK 465 PHE A 230 REMARK 465 LYS A 248 REMARK 465 SER A 249 REMARK 465 LYS A 250 REMARK 465 ASP A 251 REMARK 465 GLU A 252 REMARK 465 ARG A 253 REMARK 465 ASN A 254 REMARK 465 GLU A 255 REMARK 465 ASP A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 GLU B 2 REMARK 465 ASN B 3 REMARK 465 LYS B 218 REMARK 465 LYS B 219 REMARK 465 LYS B 220 REMARK 465 GLN B 221 REMARK 465 LYS B 222 REMARK 465 LYS B 223 REMARK 465 GLY B 224 REMARK 465 ALA B 225 REMARK 465 ASN B 226 REMARK 465 ALA B 227 REMARK 465 GLY B 228 REMARK 465 LYS B 229 REMARK 465 PHE B 230 REMARK 465 LEU B 231 REMARK 465 THR B 232 REMARK 465 LYS B 233 REMARK 465 ASN B 254 REMARK 465 GLU B 255 REMARK 465 ASP B 256 REMARK 465 GLU B 257 REMARK 465 ASP B 258 REMARK 465 ASP B 259 REMARK 465 ASP B 295 REMARK 465 ASP B 296 REMARK 465 HIS D 28 REMARK 465 MET D 29 REMARK 465 ARG D 30 REMARK 465 ALA D 123 REMARK 465 LYS D 124 REMARK 465 THR D 125 REMARK 465 GLY D 126 REMARK 465 GLY D 127 REMARK 465 THR D 216 REMARK 465 ILE D 217 REMARK 465 ALA D 218 REMARK 465 GLN D 219 REMARK 465 GLY D 220 REMARK 465 GLY D 221 REMARK 465 VAL D 222 REMARK 465 LEU D 223 REMARK 465 PRO D 224 REMARK 465 ASN D 225 REMARK 465 ILE D 226 REMARK 465 GLN D 227 REMARK 465 ALA D 228 REMARK 465 VAL D 229 REMARK 465 LEU D 230 REMARK 465 LEU D 231 REMARK 465 PRO D 232 REMARK 465 LYS D 233 REMARK 465 LYS D 234 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LEU B 4 CG CD1 CD2 REMARK 470 TYR B 5 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 VAL B 217 CG1 CG2 REMARK 470 GLU B 260 CG CD OE1 OE2 REMARK 470 LYS D 31 CG CD CE NZ REMARK 470 LYS D 82 CG CD CE NZ REMARK 470 ARG D 83 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 128 CG CD CE NZ REMARK 470 LYS D 130 CG CD CE NZ REMARK 470 ARG D 157 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 63 OD2 ASP B 67 3544 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 152 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 187 66.53 -151.62 REMARK 500 SER A 239 144.40 -170.36 REMARK 500 ASP B 251 3.79 -66.91 REMARK 500 SER D 84 84.06 62.43 REMARK 500 ASN D 153 17.00 57.39 REMARK 500 TYR D 154 100.55 -50.59 REMARK 500 ALA D 155 72.32 40.52 REMARK 500 ARG D 157 108.19 108.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 6K00 A 10 296 UNP Q19007 Q19007_CAEEL 10 296 DBREF 6K00 B 10 296 UNP Q19007 Q19007_CAEEL 10 296 DBREF 6K00 D 30 121 UNP P04255 H2B1_CAEEL 30 121 DBREF 6K00 D 122 234 UNP P09588 H2A_CAEEL 9 121 SEQADV 6K00 MET A -11 UNP Q19007 INITIATING METHIONINE SEQADV 6K00 GLY A -10 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER A -9 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER A -8 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS A -7 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS A -6 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS A -5 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS A -4 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS A -3 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS A -2 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER A -1 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER A 0 UNP Q19007 EXPRESSION TAG SEQADV 6K00 GLY A 1 UNP Q19007 EXPRESSION TAG SEQADV 6K00 GLU A 2 UNP Q19007 EXPRESSION TAG SEQADV 6K00 ASN A 3 UNP Q19007 EXPRESSION TAG SEQADV 6K00 LEU A 4 UNP Q19007 EXPRESSION TAG SEQADV 6K00 TYR A 5 UNP Q19007 EXPRESSION TAG SEQADV 6K00 PHE A 6 UNP Q19007 EXPRESSION TAG SEQADV 6K00 GLN A 7 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS A 8 UNP Q19007 EXPRESSION TAG SEQADV 6K00 MET A 9 UNP Q19007 EXPRESSION TAG SEQADV 6K00 MET B -11 UNP Q19007 INITIATING METHIONINE SEQADV 6K00 GLY B -10 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER B -9 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER B -8 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS B -7 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS B -6 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS B -5 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS B -4 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS B -3 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS B -2 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER B -1 UNP Q19007 EXPRESSION TAG SEQADV 6K00 SER B 0 UNP Q19007 EXPRESSION TAG SEQADV 6K00 GLY B 1 UNP Q19007 EXPRESSION TAG SEQADV 6K00 GLU B 2 UNP Q19007 EXPRESSION TAG SEQADV 6K00 ASN B 3 UNP Q19007 EXPRESSION TAG SEQADV 6K00 LEU B 4 UNP Q19007 EXPRESSION TAG SEQADV 6K00 TYR B 5 UNP Q19007 EXPRESSION TAG SEQADV 6K00 PHE B 6 UNP Q19007 EXPRESSION TAG SEQADV 6K00 GLN B 7 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS B 8 UNP Q19007 EXPRESSION TAG SEQADV 6K00 MET B 9 UNP Q19007 EXPRESSION TAG SEQADV 6K00 HIS D 28 UNP P04255 EXPRESSION TAG SEQADV 6K00 MET D 29 UNP P04255 EXPRESSION TAG SEQRES 1 A 308 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 308 GLU ASN LEU TYR PHE GLN HIS MET GLY LEU LEU SER THR SEQRES 3 A 308 ASN PHE ASP MET ILE GLN ALA LEU PRO LEU ASN VAL LYS SEQRES 4 A 308 GLN ARG VAL CYS ALA LEU LYS ASN LEU GLN MET LYS THR SEQRES 5 A 308 ILE GLN ILE GLU SER ASP PHE TYR LYS ARG VAL HIS GLU SEQRES 6 A 308 LEU GLU ILE GLU PHE GLU GLY LYS PHE LYS SER THR PHE SEQRES 7 A 308 ASP GLN ARG LYS ALA ILE VAL ALA GLY GLU VAL GLU PRO SEQRES 8 A 308 THR LYS GLU GLN ILE ASP THR PRO ILE LEU GLU GLY LEU SEQRES 9 A 308 GLU GLY ASP GLN LEU ALA GLU LEU TYR LYS ALA ALA GLU SEQRES 10 A 308 ALA ASP PRO SER ALA LYS GLY ILE LYS ASP PHE TRP LEU SEQRES 11 A 308 THR ALA LEU ARG THR HIS ASP LEU VAL ALA GLU ALA ILE SEQRES 12 A 308 GLU GLU HIS ASP VAL PRO ILE LEU SER TYR LEU THR ASP SEQRES 13 A 308 VAL THR THR ALA ALA SER LYS ASP PRO ALA GLY PHE LYS SEQRES 14 A 308 ILE GLU PHE HIS PHE ALA THR ASN PRO TYR PHE LYS ASN SEQRES 15 A 308 GLN VAL LEU THR LYS THR TYR LEU LEU GLY PHE ASP PRO SEQRES 16 A 308 ASP ALA GLU ALA PRO LEU GLN PHE ASP GLY PRO HIS VAL SEQRES 17 A 308 ILE ARG ALA VAL GLY ASP THR ILE GLU TRP GLU ASP GLY SEQRES 18 A 308 LYS ASN VAL THR LYS LYS ALA VAL LYS LYS LYS GLN LYS SEQRES 19 A 308 LYS GLY ALA ASN ALA GLY LYS PHE LEU THR LYS THR VAL SEQRES 20 A 308 LYS ALA ASP SER PHE PHE ASN PHE PHE GLU PRO PRO LYS SEQRES 21 A 308 SER LYS ASP GLU ARG ASN GLU ASP GLU ASP ASP GLU GLN SEQRES 22 A 308 ALA GLU GLU PHE LEU GLU LEU ASP TYR GLU MET GLY GLN SEQRES 23 A 308 ALA ILE ARG ASP THR ILE ILE PRO ARG ALA VAL LEU PHE SEQRES 24 A 308 TYR THR GLY GLU LEU GLN SER ASP ASP SEQRES 1 B 308 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 308 GLU ASN LEU TYR PHE GLN HIS MET GLY LEU LEU SER THR SEQRES 3 B 308 ASN PHE ASP MET ILE GLN ALA LEU PRO LEU ASN VAL LYS SEQRES 4 B 308 GLN ARG VAL CYS ALA LEU LYS ASN LEU GLN MET LYS THR SEQRES 5 B 308 ILE GLN ILE GLU SER ASP PHE TYR LYS ARG VAL HIS GLU SEQRES 6 B 308 LEU GLU ILE GLU PHE GLU GLY LYS PHE LYS SER THR PHE SEQRES 7 B 308 ASP GLN ARG LYS ALA ILE VAL ALA GLY GLU VAL GLU PRO SEQRES 8 B 308 THR LYS GLU GLN ILE ASP THR PRO ILE LEU GLU GLY LEU SEQRES 9 B 308 GLU GLY ASP GLN LEU ALA GLU LEU TYR LYS ALA ALA GLU SEQRES 10 B 308 ALA ASP PRO SER ALA LYS GLY ILE LYS ASP PHE TRP LEU SEQRES 11 B 308 THR ALA LEU ARG THR HIS ASP LEU VAL ALA GLU ALA ILE SEQRES 12 B 308 GLU GLU HIS ASP VAL PRO ILE LEU SER TYR LEU THR ASP SEQRES 13 B 308 VAL THR THR ALA ALA SER LYS ASP PRO ALA GLY PHE LYS SEQRES 14 B 308 ILE GLU PHE HIS PHE ALA THR ASN PRO TYR PHE LYS ASN SEQRES 15 B 308 GLN VAL LEU THR LYS THR TYR LEU LEU GLY PHE ASP PRO SEQRES 16 B 308 ASP ALA GLU ALA PRO LEU GLN PHE ASP GLY PRO HIS VAL SEQRES 17 B 308 ILE ARG ALA VAL GLY ASP THR ILE GLU TRP GLU ASP GLY SEQRES 18 B 308 LYS ASN VAL THR LYS LYS ALA VAL LYS LYS LYS GLN LYS SEQRES 19 B 308 LYS GLY ALA ASN ALA GLY LYS PHE LEU THR LYS THR VAL SEQRES 20 B 308 LYS ALA ASP SER PHE PHE ASN PHE PHE GLU PRO PRO LYS SEQRES 21 B 308 SER LYS ASP GLU ARG ASN GLU ASP GLU ASP ASP GLU GLN SEQRES 22 B 308 ALA GLU GLU PHE LEU GLU LEU ASP TYR GLU MET GLY GLN SEQRES 23 B 308 ALA ILE ARG ASP THR ILE ILE PRO ARG ALA VAL LEU PHE SEQRES 24 B 308 TYR THR GLY GLU LEU GLN SER ASP ASP SEQRES 1 D 207 HIS MET ARG LYS GLU SER TYR SER VAL TYR ILE TYR ARG SEQRES 2 D 207 VAL LEU LYS GLN VAL HIS PRO ASP THR GLY VAL SER SER SEQRES 3 D 207 LYS ALA MET SER ILE MET ASN SER PHE VAL ASN ASP VAL SEQRES 4 D 207 PHE GLU ARG ILE ALA ALA GLU ALA SER ARG LEU ALA HIS SEQRES 5 D 207 TYR ASN LYS ARG SER THR ILE SER SER ARG GLU ILE GLN SEQRES 6 D 207 THR ALA VAL ARG LEU ILE LEU PRO GLY GLU LEU ALA LYS SEQRES 7 D 207 HIS ALA VAL SER GLU GLY THR LYS ALA VAL THR LYS TYR SEQRES 8 D 207 THR SER SER LYS ALA LYS THR GLY GLY LYS ALA LYS SER SEQRES 9 D 207 ARG SER SER ARG ALA GLY LEU GLN PHE PRO VAL GLY ARG SEQRES 10 D 207 LEU HIS ARG ILE LEU ARG LYS GLY ASN TYR ALA GLN ARG SEQRES 11 D 207 VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA ALA VAL LEU SEQRES 12 D 207 GLU TYR LEU ALA ALA GLU VAL LEU GLU LEU ALA GLY ASN SEQRES 13 D 207 ALA ALA ARG ASP ASN LYS LYS THR ARG ILE ALA PRO ARG SEQRES 14 D 207 HIS LEU GLN LEU ALA VAL ARG ASN ASP GLU GLU LEU ASN SEQRES 15 D 207 LYS LEU LEU ALA GLY VAL THR ILE ALA GLN GLY GLY VAL SEQRES 16 D 207 LEU PRO ASN ILE GLN ALA VAL LEU LEU PRO LYS LYS FORMUL 4 HOH *48(H2 O) HELIX 1 AA1 ASN A 15 LEU A 22 1 8 HELIX 2 AA2 PRO A 23 ALA A 74 1 52 HELIX 3 AA3 THR A 80 ASP A 85 1 6 HELIX 4 AA4 GLU A 93 ALA A 103 1 11 HELIX 5 AA5 ASP A 115 HIS A 124 1 10 HELIX 6 AA6 HIS A 124 ILE A 131 1 8 HELIX 7 AA7 GLU A 132 HIS A 134 5 3 HELIX 8 AA8 ASP A 135 SER A 140 1 6 HELIX 9 AA9 ALA A 187 PHE A 191 5 5 HELIX 10 AB1 SER A 239 GLU A 245 5 7 HELIX 11 AB2 GLN A 261 THR A 279 1 19 HELIX 12 AB3 ARG A 283 THR A 289 1 7 HELIX 13 AB4 MET B 9 SER B 13 5 5 HELIX 14 AB5 ASN B 15 LEU B 22 1 8 HELIX 15 AB6 PRO B 23 ALA B 74 1 52 HELIX 16 AB7 THR B 80 ASP B 85 1 6 HELIX 17 AB8 GLU B 93 ALA B 103 1 11 HELIX 18 AB9 ASP B 115 HIS B 124 1 10 HELIX 19 AC1 HIS B 124 ILE B 131 1 8 HELIX 20 AC2 GLU B 132 HIS B 134 5 3 HELIX 21 AC3 ASP B 135 SER B 140 1 6 HELIX 22 AC4 ALA B 187 PHE B 191 5 5 HELIX 23 AC5 SER B 239 GLU B 245 5 7 HELIX 24 AC6 SER B 249 ARG B 253 5 5 HELIX 25 AC7 GLU B 260 GLU B 260 5 1 HELIX 26 AC8 GLN B 261 THR B 279 1 19 HELIX 27 AC9 ARG B 283 THR B 289 1 7 HELIX 28 AD1 TYR D 34 HIS D 46 1 13 HELIX 29 AD2 SER D 52 HIS D 79 1 28 HELIX 30 AD3 SER D 87 LEU D 99 1 13 HELIX 31 AD4 PRO D 100 SER D 120 1 21 HELIX 32 AD5 SER D 131 ALA D 136 1 6 HELIX 33 AD6 PRO D 141 GLY D 152 1 12 HELIX 34 AD7 ALA D 160 ASN D 188 1 29 HELIX 35 AD8 ALA D 194 ASN D 204 1 11 HELIX 36 AD9 ASP D 205 LEU D 212 1 8 SHEET 1 AA1 4 LEU A 142 SER A 150 0 SHEET 2 AA1 4 GLY A 155 PHE A 162 -1 O HIS A 161 N THR A 143 SHEET 3 AA1 4 VAL A 172 GLY A 180 -1 O TYR A 177 N PHE A 156 SHEET 4 AA1 4 HIS A 195 VAL A 200 -1 O HIS A 195 N GLY A 180 SHEET 1 AA2 2 LYS A 214 VAL A 217 0 SHEET 2 AA2 2 LYS A 233 LYS A 236 -1 O VAL A 235 N LYS A 215 SHEET 1 AA3 2 LEU A 292 GLN A 293 0 SHEET 2 AA3 2 TYR B 5 PHE B 6 -1 O TYR B 5 N GLN A 293 SHEET 1 AA4 4 LEU B 142 SER B 150 0 SHEET 2 AA4 4 GLY B 155 PHE B 162 -1 O GLU B 159 N THR B 146 SHEET 3 AA4 4 VAL B 172 GLY B 180 -1 O TYR B 177 N PHE B 156 SHEET 4 AA4 4 HIS B 195 VAL B 200 -1 O VAL B 200 N THR B 176 SHEET 1 AA5 2 LYS B 214 LYS B 215 0 SHEET 2 AA5 2 VAL B 235 LYS B 236 -1 O VAL B 235 N LYS B 215 SHEET 1 AA6 2 GLY D 50 VAL D 51 0 SHEET 2 AA6 2 ARG D 192 ILE D 193 1 O ILE D 193 N GLY D 50 CISPEP 1 ASP A 152 PRO A 153 0 -6.28 CISPEP 2 ASP B 152 PRO B 153 0 0.54 CRYST1 68.298 78.724 169.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014642 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005904 0.00000