HEADER HYDROLASE 07-MAY-19 6K0S TITLE CATALYTIC DOMAIN OF GH87 ALPHA-1,3-GLUCANASE D1069A IN COMPLEX WITH TITLE 2 NIGEROSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,3-GLUCANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS GLYCANILYTICUS; SOURCE 3 ORGANISM_TAXID: 126569; SOURCE 4 STRAIN: FH11; SOURCE 5 GENE: AGL; SOURCE 6 EXPRESSION_SYSTEM: BREVIBACILLUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 55080 KEYWDS GH87 ALPHA-1, 3-GLUCANASE, CATALYTIC DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.ITOH,R.INTUY,W.SUYOTHA,J.HAYASHI,S.YANO,K.MAKABE,M.WAKAYAMA,T.HIBI REVDAT 4 22-NOV-23 6K0S 1 HETSYN LINK REVDAT 3 29-JUL-20 6K0S 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 01-JUL-20 6K0S 1 JRNL REVDAT 1 25-DEC-19 6K0S 0 JRNL AUTH T.ITOH,R.INTUY,W.SUYOTHA,J.HAYASHI,S.YANO,K.MAKABE, JRNL AUTH 2 M.WAKAYAMA,T.HIBI JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE RECOGNITION AND CATALYSIS JRNL TITL 2 BY GLYCOSIDE HYDROLASE FAMILY 87 ALPHA-1,3-GLUCANASE FROM JRNL TITL 3 PAENIBACILLUS GLYCANILYTICUS FH11. JRNL REF FEBS J. V. 287 2524 2020 JRNL REFN ISSN 1742-464X JRNL PMID 31788942 JRNL DOI 10.1111/FEBS.15161 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 101377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2334 - 4.7621 0.99 3470 177 0.1686 0.1765 REMARK 3 2 4.7621 - 3.7809 1.00 3317 175 0.1159 0.1351 REMARK 3 3 3.7809 - 3.3033 1.00 3273 183 0.1295 0.1469 REMARK 3 4 3.3033 - 3.0014 1.00 3278 168 0.1474 0.1559 REMARK 3 5 3.0014 - 2.7863 1.00 3239 184 0.1545 0.1849 REMARK 3 6 2.7863 - 2.6221 1.00 3201 192 0.1542 0.1631 REMARK 3 7 2.6221 - 2.4908 1.00 3254 152 0.1522 0.1641 REMARK 3 8 2.4908 - 2.3824 1.00 3195 190 0.1449 0.1617 REMARK 3 9 2.3824 - 2.2907 1.00 3205 186 0.1442 0.1496 REMARK 3 10 2.2907 - 2.2117 1.00 3179 198 0.1368 0.1634 REMARK 3 11 2.2117 - 2.1425 1.00 3214 171 0.1400 0.1874 REMARK 3 12 2.1425 - 2.0813 1.00 3193 170 0.1451 0.1527 REMARK 3 13 2.0813 - 2.0265 1.00 3210 167 0.1402 0.1521 REMARK 3 14 2.0265 - 1.9771 1.00 3199 155 0.1389 0.1645 REMARK 3 15 1.9771 - 1.9321 1.00 3182 176 0.1611 0.1671 REMARK 3 16 1.9321 - 1.8910 1.00 3197 149 0.1616 0.1864 REMARK 3 17 1.8910 - 1.8532 1.00 3209 151 0.1625 0.2005 REMARK 3 18 1.8532 - 1.8182 1.00 3180 173 0.1692 0.1714 REMARK 3 19 1.8182 - 1.7857 1.00 3190 169 0.1717 0.1977 REMARK 3 20 1.7857 - 1.7555 1.00 3189 170 0.1836 0.2033 REMARK 3 21 1.7555 - 1.7271 1.00 3171 171 0.1869 0.2276 REMARK 3 22 1.7271 - 1.7006 1.00 3150 169 0.1984 0.2036 REMARK 3 23 1.7006 - 1.6756 1.00 3215 160 0.2114 0.2442 REMARK 3 24 1.6756 - 1.6520 1.00 3181 158 0.2199 0.2289 REMARK 3 25 1.6520 - 1.6296 1.00 3194 143 0.2314 0.2544 REMARK 3 26 1.6296 - 1.6085 1.00 3176 176 0.2468 0.2759 REMARK 3 27 1.6085 - 1.5884 1.00 3149 166 0.2278 0.2937 REMARK 3 28 1.5884 - 1.5692 1.00 3187 168 0.2393 0.2739 REMARK 3 29 1.5692 - 1.5510 1.00 3170 172 0.2501 0.3040 REMARK 3 30 1.5510 - 1.5336 0.98 3132 139 0.2516 0.2636 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 6K0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101377 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 41.918 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6K0M REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M (NH4)2SO4, 25% (V/V) GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.08950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.27850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.27850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.13425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.27850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.27850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.04475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.27850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.27850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.13425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.27850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.27850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.04475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.08950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2678 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2689 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2937 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 715 REMARK 465 GLY A 716 REMARK 465 SER A 717 REMARK 465 VAL A 718 REMARK 465 ASP A 719 REMARK 465 THR A 720 REMARK 465 VAL A 721 REMARK 465 SER A 722 REMARK 465 LEU A 723 REMARK 465 TYR A 724 REMARK 465 SER A 725 REMARK 465 ASP A 1078 REMARK 465 SER A 1079 REMARK 465 GLY A 1080 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2102 O HOH A 2644 2.10 REMARK 500 OE1 GLN A 1244 O HOH A 2101 2.12 REMARK 500 O HOH A 2188 O HOH A 2195 2.19 REMARK 500 O ASN A 936 O HOH A 2102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2674 O HOH A 2713 8666 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 823 88.33 68.45 REMARK 500 ASP A 897 104.79 -166.36 REMARK 500 ALA A1044 -142.20 -146.62 REMARK 500 ALA A1100 -167.37 71.86 REMARK 500 ASN A1115 71.11 58.41 REMARK 500 TRP A1161 -160.18 59.30 REMARK 500 ASN A1190 62.17 60.72 REMARK 500 TYR A1203 -54.29 -131.30 REMARK 500 ARG A1233 -75.77 -111.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2960 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A2961 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2962 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A2963 DISTANCE = 7.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2006 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 737 OE1 REMARK 620 2 GLU A 739 OE1 101.6 REMARK 620 3 GLU A 739 OE2 85.4 52.4 REMARK 620 4 SER A 764 O 84.5 130.8 80.0 REMARK 620 5 SER A 767 O 161.8 77.2 79.5 82.9 REMARK 620 6 ASP A 882 O 81.1 80.4 126.7 147.9 116.3 REMARK 620 7 ASP A 882 OD1 104.1 138.4 160.6 84.1 87.6 72.0 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6K0M RELATED DB: PDB REMARK 900 WT APOFORM REMARK 900 RELATED ID: 6K0N RELATED DB: PDB REMARK 900 WT COMPLEXED WITH NIGEROSE REMARK 900 RELATED ID: 6K0P RELATED DB: PDB REMARK 900 D1045A COMPLEXED WITH NIGEROSE REMARK 900 RELATED ID: 6K0Q RELATED DB: PDB REMARK 900 D1068A COMPLEXED WITH NIGEROSE DBREF1 6K0S A 720 1287 UNP A0A068PS59_9BACL DBREF2 6K0S A A0A068PS59 720 1287 SEQADV 6K0S ALA A 715 UNP A0A068PS5 EXPRESSION TAG SEQADV 6K0S GLY A 716 UNP A0A068PS5 EXPRESSION TAG SEQADV 6K0S SER A 717 UNP A0A068PS5 EXPRESSION TAG SEQADV 6K0S VAL A 718 UNP A0A068PS5 EXPRESSION TAG SEQADV 6K0S ASP A 719 UNP A0A068PS5 EXPRESSION TAG SEQADV 6K0S ALA A 1069 UNP A0A068PS5 ASP 1069 ENGINEERED MUTATION SEQRES 1 A 573 ALA GLY SER VAL ASP THR VAL SER LEU TYR SER GLY ARG SEQRES 2 A 573 GLY ALA ASN MET PRO PHE THR ILE MET GLU ALA GLU SER SEQRES 3 A 573 THR SER ASN ALA THR ASN GLY THR LYS LEU THR PRO ASN SEQRES 4 A 573 PHE LYS PRO GLY ASP TYR ALA GLY GLU ALA SER GLY ARG SEQRES 5 A 573 SER SER VAL TYR LEU ASP ALA THR GLY GLU TYR VAL GLU SEQRES 6 A 573 PHE THR LEU THR SER PRO ALA ASN ALA PHE VAL LEU ARG SEQRES 7 A 573 ASN ALA VAL ALA GLU ASN THR THR GLY THR VAL SER ILE SEQRES 8 A 573 TYR ALA ASP GLY VAL SER LYS GLY LYS PHE ASN VAL SER SEQRES 9 A 573 SER LYS PHE SER TYR LEU TYR ALA THR PRO SER THR LEU SEQRES 10 A 573 GLY ARG LEU GLY TYR ASP ASN ALA PRO GLY ALA GLY LEU SEQRES 11 A 573 THR ALA TYR TRP LEU TYR GLU ASP ALA GLN LEU MET LEU SEQRES 12 A 573 ASP GLN VAL TYR PRO ALA GLY THR LYS ILE LYS ILE GLN SEQRES 13 A 573 LYS ASP ALA GLY ASP VAL SER TRP ILE TYR VAL ASP LEU SEQRES 14 A 573 LEU GLU THR GLU ASN VAL ALA PRO PRO GLN ALA ASN PRO SEQRES 15 A 573 ASP PRO THR LYS TYR VAL ALA VAL SER ALA SER LYS SER SEQRES 16 A 573 ILE ASP GLN ALA LEU THR GLU PHE ARG GLN ASP ASN THR SEQRES 17 A 573 LYS LYS GLY ILE TYR ILE PRO ALA GLY GLU TRP THR ILE SEQRES 18 A 573 ASN SER LYS ILE PHE LEU TYR GLY ARG ALA THR GLU ILE SEQRES 19 A 573 VAL GLY ALA GLY PRO TRP TYR THR LYS LEU VAL ALA PRO SEQRES 20 A 573 GLN SER GLN SER ASN THR ASP VAL GLY PHE ASN ILE SER SEQRES 21 A 573 ALA ALA ALA ASN GLY SER THR ILE ARG ASP LEU SER ALA SEQRES 22 A 573 TRP GLY ASN TYR ILE ASN ARG VAL ASP GLY PRO GLY LYS SEQRES 23 A 573 PHE ILE ASP GLY ASN GLY MET GLN ASN VAL THR VAL GLN SEQRES 24 A 573 ASN ILE TRP VAL GLU HIS PHE VAL CYS LEU TYR TRP GLY SEQRES 25 A 573 VAL ASN SER SER TYR ASN THR PHE LYS ASN ASN ARG ILE SEQRES 26 A 573 LYS ASN THR PHE ALA ASP GLY ILE ASN MET THR ASN GLY SEQRES 27 A 573 SER SER TYR ASN VAL ILE ASP ASN ASN TYR ALA ARG GLY SEQRES 28 A 573 THR GLY ASP ALA SER PHE ALA LEU PHE SER ALA THR ASP SEQRES 29 A 573 SER GLY GLY SER TYR ASN VAL GLY ASN LYS TYR THR ASN SEQRES 30 A 573 LEU THR ALA THR ASN VAL ARG ARG ALA ALA ALA PHE ALA SEQRES 31 A 573 VAL TYR GLY GLY SER ASP ASN LEU PHE GLN ASN LEU TYR SEQRES 32 A 573 GLY ALA ASP THR LEU THR TYR PRO GLY ILE THR ILE SER SEQRES 33 A 573 SER TYR SER PHE GLY TYR ASN THR LEU GLY PHE GLY ASP SEQRES 34 A 573 GLN ASP THR VAL ILE ASP GLY ALA THR LEU ASP ARG THR SEQRES 35 A 573 GLY GLY ASP PHE TRP THR SER VAL GLY ALA ASP ASP LYS SEQRES 36 A 573 ILE ASN GLU TYR GLN ASN PHE GLY ALA ILE TRP ILE TYR SEQRES 37 A 573 GLY GLY ASP ARG ALA ILE LYS ASN ILE LEU ILE LYS ASN SEQRES 38 A 573 VAL ASP ILE ASN ASN PRO VAL TYR PHE GLY LEU MET PHE SEQRES 39 A 573 GLN SER MET SER PRO ASN ASN MET VAL MET GLN ASN ILE SEQRES 40 A 573 ARG VAL GLU ASN VAL ASN ILE ASN ASN PRO SER ARG TYR SEQRES 41 A 573 GLY ILE LYS LEU VAL VAL ARG ALA GLU GLN GLY GLN GLY SEQRES 42 A 573 PRO ALA TYR GLY GLY ALA SER PHE THR ASN VAL LYS VAL SEQRES 43 A 573 ASN ASN PRO GLY ILE SER ALA ILE TYR GLY GLU ALA GLN SEQRES 44 A 573 SER PRO ASN PHE THR VAL THR ARG VAL SER GLY ASN ASN SEQRES 45 A 573 TRP HET GLC B 1 12 HET GLC B 2 11 HET GLC C 1 12 HET GLC C 2 11 HET BGC D 1 12 HET GLC D 2 11 HET SO4 A2001 5 HET SO4 A2002 5 HET SO4 A2003 5 HET SO4 A2004 5 HET SO4 A2005 5 HET CA A2006 1 HET ACY A2013 4 HET ACY A2014 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION HETNAM ACY ACETIC ACID HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 5(C6 H12 O6) FORMUL 4 BGC C6 H12 O6 FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 CA CA 2+ FORMUL 11 ACY 2(C2 H4 O2) FORMUL 13 HOH *863(H2 O) HELIX 1 AA1 ALA A 763 SER A 767 5 5 HELIX 2 AA2 THR A 830 LEU A 834 5 5 HELIX 3 AA3 SER A 909 GLN A 919 1 11 HELIX 4 AA4 ALA A 975 ASN A 978 5 4 SHEET 1 AA1 4 THR A 734 GLU A 737 0 SHEET 2 AA1 4 ILE A 879 GLU A 887 -1 O THR A 886 N THR A 734 SHEET 3 AA1 4 VAL A 769 LEU A 771 -1 N VAL A 769 O VAL A 881 SHEET 4 AA1 4 THR A 748 LYS A 749 -1 N THR A 748 O TYR A 770 SHEET 1 AA2 4 THR A 734 GLU A 737 0 SHEET 2 AA2 4 ILE A 879 GLU A 887 -1 O THR A 886 N THR A 734 SHEET 3 AA2 4 ALA A 786 ALA A 794 -1 N VAL A 790 O GLU A 885 SHEET 4 AA2 4 GLU A 851 TYR A 861 -1 O GLU A 851 N ASN A 793 SHEET 1 AA3 4 TYR A 777 THR A 781 0 SHEET 2 AA3 4 LYS A 866 GLN A 870 -1 O ILE A 867 N PHE A 780 SHEET 3 AA3 4 THR A 800 ALA A 807 -1 N TYR A 806 O LYS A 868 SHEET 4 AA3 4 VAL A 810 SER A 818 -1 O LYS A 812 N ILE A 805 SHEET 1 AA4 2 LEU A 824 ALA A 826 0 SHEET 2 AA4 2 THR A 845 TYR A 847 -1 O THR A 845 N ALA A 826 SHEET 1 AA514 TYR A 901 ALA A 903 0 SHEET 2 AA514 GLY A 925 ILE A 928 1 O GLY A 925 N VAL A 902 SHEET 3 AA514 GLU A 947 GLY A 950 1 O VAL A 949 N ILE A 928 SHEET 4 AA514 THR A 981 TRP A 988 1 O THR A 981 N ILE A 948 SHEET 5 AA514 THR A1011 GLU A1018 1 O TRP A1016 N ALA A 987 SHEET 6 AA514 THR A1033 LYS A1035 1 O THR A1033 N VAL A1012 SHEET 7 AA514 VAL A1057 ASP A1059 1 O VAL A1057 N PHE A1034 SHEET 8 AA514 LYS A1088 VAL A1097 1 O LYS A1088 N ILE A1058 SHEET 9 AA514 ASN A1111 THR A1121 1 O LEU A1112 N TYR A1089 SHEET 10 AA514 THR A1146 ASP A1154 1 O VAL A1147 N PHE A1113 SHEET 11 AA514 LYS A1189 ASN A1199 1 O LEU A1192 N ILE A1148 SHEET 12 AA514 GLN A1219 ASN A1229 1 O ASN A1227 N ILE A1198 SHEET 13 AA514 GLY A1251 ASN A1261 1 O ASN A1261 N ILE A1228 SHEET 14 AA514 PHE A1277 SER A1283 1 O SER A1283 N ASN A1257 SHEET 1 AA613 GLY A 931 THR A 934 0 SHEET 2 AA613 THR A 956 VAL A 959 1 O LYS A 957 N TRP A 933 SHEET 3 AA613 THR A 981 TRP A 988 1 O TRP A 988 N LEU A 958 SHEET 4 AA613 THR A1011 GLU A1018 1 O TRP A1016 N ALA A 987 SHEET 5 AA613 ARG A1038 LYS A1040 1 O ARG A1038 N ILE A1015 SHEET 6 AA613 TYR A1062 ARG A1064 1 O TYR A1062 N ILE A1039 SHEET 7 AA613 LYS A1088 VAL A1097 1 O THR A1093 N ALA A1063 SHEET 8 AA613 ASN A1111 THR A1121 1 O LEU A1112 N TYR A1089 SHEET 9 AA613 THR A1146 ASP A1154 1 O VAL A1147 N PHE A1113 SHEET 10 AA613 LYS A1189 ASN A1199 1 O LEU A1192 N ILE A1148 SHEET 11 AA613 GLN A1219 ASN A1229 1 O ASN A1227 N ILE A1198 SHEET 12 AA613 GLY A1251 ASN A1261 1 O ASN A1261 N ILE A1228 SHEET 13 AA613 PHE A1277 SER A1283 1 O SER A1283 N ASN A1257 SHEET 1 AA7 3 LYS A 938 LEU A 941 0 SHEET 2 AA7 3 GLY A 970 ILE A 973 1 O GLY A 970 N ILE A 939 SHEET 3 AA7 3 ILE A1002 ASP A1003 1 O ASP A1003 N ILE A 973 SHEET 1 AA8 9 TYR A1024 VAL A1027 0 SHEET 2 AA8 9 ILE A1047 THR A1050 1 O ASN A1048 N GLY A1026 SHEET 3 AA8 9 PHE A1071 PHE A1074 1 O ALA A1072 N ILE A1047 SHEET 4 AA8 9 PHE A1103 TYR A1106 1 O TYR A1106 N LEU A1073 SHEET 5 AA8 9 ILE A1127 SER A1130 1 O THR A1128 N VAL A1105 SHEET 6 AA8 9 ILE A1179 GLY A1183 1 O TRP A1180 N ILE A1129 SHEET 7 AA8 9 PHE A1204 SER A1210 1 O MET A1207 N ILE A1181 SHEET 8 AA8 9 TYR A1234 LEU A1238 1 O LYS A1237 N LEU A1206 SHEET 9 AA8 9 SER A1266 TYR A1269 1 O TYR A1269 N LEU A1238 SHEET 1 AA9 3 THR A1123 TYR A1124 0 SHEET 2 AA9 3 GLY A1157 PHE A1160 -1 O GLY A1157 N TYR A1124 SHEET 3 AA9 3 GLN A1174 PHE A1176 -1 O PHE A1176 N GLY A1158 LINK O3 GLC B 1 C1 GLC B 2 1555 1555 1.47 LINK O3 GLC C 1 C1 GLC C 2 1555 1555 1.47 LINK O3 BGC D 1 C1 GLC D 2 1555 1555 1.37 LINK OE1 GLU A 737 CA CA A2006 1555 1555 2.30 LINK OE1 GLU A 739 CA CA A2006 1555 1555 2.44 LINK OE2 GLU A 739 CA CA A2006 1555 1555 2.53 LINK O SER A 764 CA CA A2006 1555 1555 2.40 LINK O SER A 767 CA CA A2006 1555 1555 2.38 LINK O ASP A 882 CA CA A2006 1555 1555 2.60 LINK OD1 ASP A 882 CA CA A2006 1555 1555 2.29 CISPEP 1 GLY A 726 ARG A 727 0 2.15 CISPEP 2 SER A 1212 PRO A 1213 0 1.25 CRYST1 132.557 132.557 76.179 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007544 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013127 0.00000