HEADER VIRAL PROTEIN 15-MAY-19 6K2N TITLE STRUCTURAL BASIS OF GLYCAN RECOGNITION IN GLOBALLY PREDOMINANT HUMAN TITLE 2 P[8] ROTAVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 64-223; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 28875; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 5 PPPARG4; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS GLYCAN BINDING SPECIFICITY, VP8* STRUCTURE, MUCIN CORE 2, LACTO-N- KEYWDS 2 FUCOPENTAOSE 1 (LNFP1), VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.DUAN,Z.SUN REVDAT 5 22-NOV-23 6K2N 1 HETSYN LINK REVDAT 4 29-JUL-20 6K2N 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-MAY-20 6K2N 1 JRNL REVDAT 2 30-OCT-19 6K2N 1 JRNL REVDAT 1 09-OCT-19 6K2N 0 JRNL AUTH X.SUN,L.DANG,D.LI,J.QI,M.WANG,W.CHAI,Q.ZHANG,H.WANG,R.BAI, JRNL AUTH 2 M.TAN,Z.DUAN JRNL TITL STRUCTURAL BASIS OF GLYCAN RECOGNITION IN GLOBALLY JRNL TITL 2 PREDOMINANT HUMAN P[8] ROTAVIRUS. JRNL REF VIROL SIN V. 35 156 2020 JRNL REFN ISSN 1995-820X JRNL PMID 31620994 JRNL DOI 10.1007/S12250-019-00164-7 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.5 REMARK 3 NUMBER OF REFLECTIONS : 86599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 4273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7108 - 5.5896 0.98 3206 179 0.2187 0.2417 REMARK 3 2 5.5896 - 4.4377 0.99 3203 186 0.1718 0.1884 REMARK 3 3 4.4377 - 3.8771 1.00 3203 177 0.1558 0.1795 REMARK 3 4 3.8771 - 3.5227 1.00 3243 154 0.1697 0.1948 REMARK 3 5 3.5227 - 3.2703 1.00 3259 138 0.1837 0.2131 REMARK 3 6 3.2703 - 3.0775 0.99 3175 172 0.1947 0.2018 REMARK 3 7 3.0775 - 2.9234 1.00 3223 163 0.1902 0.2305 REMARK 3 8 2.9234 - 2.7962 1.00 3209 161 0.2138 0.2166 REMARK 3 9 2.7962 - 2.6886 1.00 3233 149 0.2228 0.2356 REMARK 3 10 2.6886 - 2.5958 1.00 3197 179 0.2195 0.2594 REMARK 3 11 2.5958 - 2.5146 1.00 3219 161 0.2125 0.2405 REMARK 3 12 2.5146 - 2.4428 0.99 3164 147 0.2228 0.2359 REMARK 3 13 2.4428 - 2.3785 0.99 3173 166 0.2155 0.2155 REMARK 3 14 2.3785 - 2.3204 0.99 3157 197 0.2182 0.2496 REMARK 3 15 2.3204 - 2.2677 0.97 3100 161 0.2154 0.2424 REMARK 3 16 2.2677 - 2.2194 0.96 3034 184 0.2174 0.2920 REMARK 3 17 2.2194 - 2.1750 0.92 2941 178 0.2194 0.2789 REMARK 3 18 2.1750 - 2.1340 0.89 2820 145 0.2243 0.2607 REMARK 3 19 2.1340 - 2.0959 0.86 2770 133 0.2213 0.2745 REMARK 3 20 2.0959 - 2.0603 0.82 2648 127 0.2252 0.3018 REMARK 3 21 2.0603 - 2.0271 0.76 2470 123 0.2259 0.2553 REMARK 3 22 2.0271 - 1.9959 0.75 2381 107 0.2316 0.2297 REMARK 3 23 1.9959 - 1.9666 0.71 2268 113 0.2291 0.2616 REMARK 3 24 1.9666 - 1.9389 0.68 2197 109 0.2410 0.2820 REMARK 3 25 1.9389 - 1.9127 0.64 2053 102 0.2460 0.2603 REMARK 3 26 1.9127 - 1.8878 0.62 1984 90 0.2342 0.2741 REMARK 3 27 1.8878 - 1.8642 0.58 1869 96 0.2450 0.2918 REMARK 3 28 1.8642 - 1.8418 0.56 1758 105 0.2507 0.2685 REMARK 3 29 1.8418 - 1.8203 0.52 1685 89 0.2633 0.3294 REMARK 3 30 1.8203 - 1.7999 0.47 1484 82 0.2638 0.2677 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 8156 REMARK 3 ANGLE : 0.689 11136 REMARK 3 CHIRALITY : 0.353 1220 REMARK 3 PLANARITY : 0.004 1448 REMARK 3 DIHEDRAL : 18.742 2942 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -14.6553 15.2505 -18.0265 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0735 REMARK 3 T33: 0.0765 T12: -0.0063 REMARK 3 T13: -0.0005 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.5339 L22: 0.0546 REMARK 3 L33: 0.0915 L12: -0.0265 REMARK 3 L13: -0.0035 L23: 0.0206 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.0145 S13: 0.0650 REMARK 3 S21: 0.0001 S22: 0.0115 S23: 0.0073 REMARK 3 S31: -0.0111 S32: -0.0021 S33: -0.0145 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99560 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 21.5970 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.5, 2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.27500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU D 160 O HOH D 701 1.81 REMARK 500 O HOH C 285 O HOH C 303 1.84 REMARK 500 O HOH F 310 O HOH F 325 1.86 REMARK 500 OH TYR F 89 O HOH F 201 1.87 REMARK 500 O ASN D 86 O HOH D 702 1.88 REMARK 500 O HOH C 282 O HOH C 283 1.89 REMARK 500 O HOH D 746 O HOH E 313 1.90 REMARK 500 O HOH A 202 O HOH A 221 1.90 REMARK 500 O HOH A 202 O HOH A 286 1.92 REMARK 500 O HOH C 298 O HOH F 347 1.95 REMARK 500 NH1 ARG F 68 O HOH F 202 1.97 REMARK 500 O HOH C 305 O HOH C 308 1.97 REMARK 500 O HOH D 701 O HOH D 713 2.00 REMARK 500 O HOH C 228 O HOH C 295 2.00 REMARK 500 O HOH C 211 O HOH C 306 2.00 REMARK 500 OG SER E 139 O HOH E 201 2.03 REMARK 500 O HOH F 250 O HOH F 320 2.04 REMARK 500 OG SER F 139 O HOH F 203 2.05 REMARK 500 O HOH C 297 O HOH C 316 2.07 REMARK 500 NH1 ARG C 146 O HOH C 201 2.07 REMARK 500 OD2 ASP E 123 O HOH E 202 2.07 REMARK 500 NZ LYS B 151 O HOH B 701 2.08 REMARK 500 OG SER A 139 O HOH A 201 2.08 REMARK 500 O HOH C 299 O HOH C 304 2.08 REMARK 500 O HOH E 213 O HOH F 322 2.09 REMARK 500 O HOH E 291 O HOH E 300 2.10 REMARK 500 O HOH B 763 O HOH B 784 2.11 REMARK 500 O HOH D 820 O HOH D 831 2.11 REMARK 500 O HOH D 775 O HOH D 835 2.11 REMARK 500 O HOH E 208 O HOH E 231 2.12 REMARK 500 O HOH A 310 O HOH A 317 2.13 REMARK 500 O HOH C 242 O HOH C 305 2.13 REMARK 500 O LEU A 160 O HOH A 202 2.13 REMARK 500 OD1 ASP C 72 O HOH C 202 2.13 REMARK 500 ND2 ASN E 35 O HOH E 203 2.14 REMARK 500 O HOH C 313 O HOH C 316 2.14 REMARK 500 NZ LYS F 99 O HOH F 204 2.14 REMARK 500 NH1 ARG C 81 O HOH C 203 2.15 REMARK 500 OD1 ASN D 62 O HOH D 703 2.15 REMARK 500 O HOH D 792 O HOH D 834 2.15 REMARK 500 O HOH D 726 O HOH D 808 2.15 REMARK 500 O HOH F 212 O HOH F 241 2.16 REMARK 500 O HOH E 241 O HOH E 313 2.16 REMARK 500 O HOH F 300 O HOH F 325 2.16 REMARK 500 O HOH D 716 O HOH D 777 2.16 REMARK 500 O HOH F 315 O HOH F 336 2.17 REMARK 500 O HOH A 294 O HOH A 303 2.17 REMARK 500 O HOH B 761 O HOH B 796 2.17 REMARK 500 OE1 GLN C 7 O HOH C 204 2.17 REMARK 500 O HOH C 201 O HOH C 277 2.18 REMARK 500 REMARK 500 THIS ENTRY HAS 55 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 702 O HOH F 201 2555 1.72 REMARK 500 O HOH E 279 O HOH F 204 1455 1.88 REMARK 500 O HOH B 808 O HOH F 345 2555 1.99 REMARK 500 OE2 GLU D 140 O HOH C 204 1455 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 57.78 -95.61 REMARK 500 SER A 36 -55.30 -123.81 REMARK 500 ASN B 26 52.96 -94.75 REMARK 500 SER B 36 -59.19 -120.40 REMARK 500 ASN C 26 52.11 -93.30 REMARK 500 SER C 36 -57.26 -121.92 REMARK 500 ASP C 37 15.49 -140.20 REMARK 500 ASN D 26 52.40 -94.01 REMARK 500 ASN D 35 14.20 59.46 REMARK 500 ASP D 37 18.20 -140.90 REMARK 500 HIS D 48 61.01 61.92 REMARK 500 ASN E 26 53.59 -94.34 REMARK 500 ASN F 26 55.99 -96.61 REMARK 500 ASP F 37 12.51 -140.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 840 DISTANCE = 5.94 ANGSTROMS DBREF 6K2N A 1 160 UNP E2EA82 E2EA82_9REOV 64 223 DBREF 6K2N B 1 160 UNP E2EA82 E2EA82_9REOV 64 223 DBREF 6K2N C 1 160 UNP E2EA82 E2EA82_9REOV 64 223 DBREF 6K2N D 1 160 UNP E2EA82 E2EA82_9REOV 64 223 DBREF 6K2N E 1 160 UNP E2EA82 E2EA82_9REOV 64 223 DBREF 6K2N F 1 160 UNP E2EA82 E2EA82_9REOV 64 223 SEQRES 1 A 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 A 160 PRO ILE ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 A 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 A 160 THR ALA VAL VAL ALA ILE GLU PRO HIS VAL ASN PRO VAL SEQRES 5 A 160 ASP ARG GLN TYR THR VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 A 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 A 160 MET PHE ARG SER SER SER GLN ASN GLU PHE TYR ASN ARG SEQRES 8 A 160 ARG THR LEU THR SER ASP THR LYS LEU VAL GLY ILE LEU SEQRES 9 A 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 A 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 A 160 ASN ASP ILE SER ILE ILE ILE HIS SER GLU PHE TYR ILE SEQRES 12 A 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 A 160 ASN ASN GLY LEU SEQRES 1 B 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 B 160 PRO ILE ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 B 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 B 160 THR ALA VAL VAL ALA ILE GLU PRO HIS VAL ASN PRO VAL SEQRES 5 B 160 ASP ARG GLN TYR THR VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 B 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 B 160 MET PHE ARG SER SER SER GLN ASN GLU PHE TYR ASN ARG SEQRES 8 B 160 ARG THR LEU THR SER ASP THR LYS LEU VAL GLY ILE LEU SEQRES 9 B 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 B 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 B 160 ASN ASP ILE SER ILE ILE ILE HIS SER GLU PHE TYR ILE SEQRES 12 B 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 B 160 ASN ASN GLY LEU SEQRES 1 C 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 C 160 PRO ILE ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 C 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 C 160 THR ALA VAL VAL ALA ILE GLU PRO HIS VAL ASN PRO VAL SEQRES 5 C 160 ASP ARG GLN TYR THR VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 C 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 C 160 MET PHE ARG SER SER SER GLN ASN GLU PHE TYR ASN ARG SEQRES 8 C 160 ARG THR LEU THR SER ASP THR LYS LEU VAL GLY ILE LEU SEQRES 9 C 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 C 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 C 160 ASN ASP ILE SER ILE ILE ILE HIS SER GLU PHE TYR ILE SEQRES 12 C 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 C 160 ASN ASN GLY LEU SEQRES 1 D 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 D 160 PRO ILE ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 D 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 D 160 THR ALA VAL VAL ALA ILE GLU PRO HIS VAL ASN PRO VAL SEQRES 5 D 160 ASP ARG GLN TYR THR VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 D 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 D 160 MET PHE ARG SER SER SER GLN ASN GLU PHE TYR ASN ARG SEQRES 8 D 160 ARG THR LEU THR SER ASP THR LYS LEU VAL GLY ILE LEU SEQRES 9 D 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 D 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 D 160 ASN ASP ILE SER ILE ILE ILE HIS SER GLU PHE TYR ILE SEQRES 12 D 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 D 160 ASN ASN GLY LEU SEQRES 1 E 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 E 160 PRO ILE ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 E 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 E 160 THR ALA VAL VAL ALA ILE GLU PRO HIS VAL ASN PRO VAL SEQRES 5 E 160 ASP ARG GLN TYR THR VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 E 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 E 160 MET PHE ARG SER SER SER GLN ASN GLU PHE TYR ASN ARG SEQRES 8 E 160 ARG THR LEU THR SER ASP THR LYS LEU VAL GLY ILE LEU SEQRES 9 E 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 E 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 E 160 ASN ASP ILE SER ILE ILE ILE HIS SER GLU PHE TYR ILE SEQRES 12 E 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 E 160 ASN ASN GLY LEU SEQRES 1 F 160 ILE LEU ASP GLY PRO TYR GLN PRO THR THR PHE THR PRO SEQRES 2 F 160 PRO ILE ASP TYR TRP ILE LEU ILE ASN SER ASN THR ASN SEQRES 3 F 160 GLY VAL VAL TYR GLU SER THR ASN ASN SER ASP PHE TRP SEQRES 4 F 160 THR ALA VAL VAL ALA ILE GLU PRO HIS VAL ASN PRO VAL SEQRES 5 F 160 ASP ARG GLN TYR THR VAL PHE GLY GLU ASN LYS GLN PHE SEQRES 6 F 160 ASN VAL ARG ASN ASP SER ASP LYS TRP LYS PHE LEU GLU SEQRES 7 F 160 MET PHE ARG SER SER SER GLN ASN GLU PHE TYR ASN ARG SEQRES 8 F 160 ARG THR LEU THR SER ASP THR LYS LEU VAL GLY ILE LEU SEQRES 9 F 160 LYS TYR GLY GLY ARG ILE TRP THR PHE HIS GLY GLU THR SEQRES 10 F 160 PRO ARG ALA THR THR ASP SER SER ASN THR ALA ASN LEU SEQRES 11 F 160 ASN ASP ILE SER ILE ILE ILE HIS SER GLU PHE TYR ILE SEQRES 12 F 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 F 160 ASN ASN GLY LEU HET A2G G 1 15 HET GAL G 2 11 HET NAG G 3 14 HET A2G H 1 15 HET GAL H 2 11 HET NAG H 3 14 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 7 A2G 2(C8 H15 N O6) FORMUL 7 GAL 2(C6 H12 O6) FORMUL 7 NAG 2(C8 H15 N O6) FORMUL 9 HOH *781(H2 O) HELIX 1 AA1 GLN A 148 GLY A 159 1 12 HELIX 2 AA2 GLN B 148 GLY B 159 1 12 HELIX 3 AA3 GLN C 148 GLY C 159 1 12 HELIX 4 AA4 GLN D 148 GLY D 159 1 12 HELIX 5 AA5 GLN E 148 GLY E 159 1 12 HELIX 6 AA6 GLN F 148 GLY F 159 1 12 SHEET 1 AA111 ASP A 3 TYR A 6 0 SHEET 2 AA111 PHE A 141 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA111 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA111 LEU A 100 TYR A 106 -1 O VAL A 101 N ILE A 21 SHEET 5 AA111 ARG A 109 GLU A 116 -1 O TRP A 111 N LEU A 104 SHEET 6 AA111 TYR A 89 SER A 96 1 N THR A 95 O GLY A 115 SHEET 7 AA111 TRP A 74 ARG A 81 -1 N GLU A 78 O ARG A 91 SHEET 8 AA111 TRP A 39 ILE A 45 -1 N ALA A 41 O MET A 79 SHEET 9 AA111 VAL A 28 THR A 33 -1 N SER A 32 O THR A 40 SHEET 10 AA111 SER A 134 ILE A 137 -1 O SER A 134 N THR A 33 SHEET 11 AA111 THR A 9 PHE A 11 -1 N THR A 9 O ILE A 137 SHEET 1 AA2 6 ASP A 3 TYR A 6 0 SHEET 2 AA2 6 PHE A 141 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA2 6 TYR A 17 ASN A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA2 6 LEU A 100 TYR A 106 -1 O VAL A 101 N ILE A 21 SHEET 5 AA2 6 ARG A 109 GLU A 116 -1 O TRP A 111 N LEU A 104 SHEET 6 AA2 6 THR A 121 ASN A 126 -1 O THR A 121 N HIS A 114 SHEET 1 AA3 2 VAL A 49 VAL A 58 0 SHEET 2 AA3 2 GLU A 61 ASN A 69 -1 O LYS A 63 N TYR A 56 SHEET 1 AA411 ASP B 3 TYR B 6 0 SHEET 2 AA411 PHE B 141 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA411 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA411 LEU B 100 TYR B 106 -1 O VAL B 101 N ILE B 21 SHEET 5 AA411 ARG B 109 GLU B 116 -1 O TRP B 111 N LEU B 104 SHEET 6 AA411 TYR B 89 SER B 96 1 N THR B 95 O GLY B 115 SHEET 7 AA411 TRP B 74 ARG B 81 -1 N PHE B 76 O LEU B 94 SHEET 8 AA411 TRP B 39 ILE B 45 -1 N ALA B 41 O MET B 79 SHEET 9 AA411 VAL B 28 THR B 33 -1 N SER B 32 O THR B 40 SHEET 10 AA411 SER B 134 ILE B 137 -1 O SER B 134 N THR B 33 SHEET 11 AA411 THR B 9 PHE B 11 -1 N THR B 9 O ILE B 137 SHEET 1 AA5 6 ASP B 3 TYR B 6 0 SHEET 2 AA5 6 PHE B 141 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA5 6 TYR B 17 ASN B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA5 6 LEU B 100 TYR B 106 -1 O VAL B 101 N ILE B 21 SHEET 5 AA5 6 ARG B 109 GLU B 116 -1 O TRP B 111 N LEU B 104 SHEET 6 AA5 6 THR B 121 ASN B 126 -1 O SER B 125 N ILE B 110 SHEET 1 AA6 2 VAL B 49 VAL B 58 0 SHEET 2 AA6 2 GLU B 61 ASN B 69 -1 O ASN B 69 N VAL B 49 SHEET 1 AA711 ASP C 3 TYR C 6 0 SHEET 2 AA711 PHE C 141 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA711 TYR C 17 ASN C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA711 LEU C 100 TYR C 106 -1 O VAL C 101 N ILE C 21 SHEET 5 AA711 ARG C 109 GLU C 116 -1 O TRP C 111 N LEU C 104 SHEET 6 AA711 TYR C 89 SER C 96 1 N THR C 95 O GLY C 115 SHEET 7 AA711 TRP C 74 ARG C 81 -1 N PHE C 76 O LEU C 94 SHEET 8 AA711 TRP C 39 ILE C 45 -1 N ALA C 41 O MET C 79 SHEET 9 AA711 VAL C 28 THR C 33 -1 N SER C 32 O THR C 40 SHEET 10 AA711 SER C 134 ILE C 137 -1 O SER C 134 N THR C 33 SHEET 11 AA711 THR C 9 PHE C 11 -1 N THR C 9 O ILE C 137 SHEET 1 AA8 6 ASP C 3 TYR C 6 0 SHEET 2 AA8 6 PHE C 141 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA8 6 TYR C 17 ASN C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA8 6 LEU C 100 TYR C 106 -1 O VAL C 101 N ILE C 21 SHEET 5 AA8 6 ARG C 109 GLU C 116 -1 O TRP C 111 N LEU C 104 SHEET 6 AA8 6 THR C 121 ASN C 126 -1 O THR C 121 N HIS C 114 SHEET 1 AA9 2 VAL C 49 VAL C 58 0 SHEET 2 AA9 2 GLU C 61 ASN C 69 -1 O ASN C 69 N VAL C 49 SHEET 1 AB111 ASP D 3 TYR D 6 0 SHEET 2 AB111 PHE D 141 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB111 TYR D 17 ASN D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB111 LEU D 100 TYR D 106 -1 O ILE D 103 N ILE D 19 SHEET 5 AB111 ARG D 109 GLU D 116 -1 O TRP D 111 N LEU D 104 SHEET 6 AB111 TYR D 89 SER D 96 1 N THR D 95 O GLY D 115 SHEET 7 AB111 TRP D 74 ARG D 81 -1 N GLU D 78 O ARG D 92 SHEET 8 AB111 TRP D 39 ILE D 45 -1 N ALA D 41 O MET D 79 SHEET 9 AB111 VAL D 28 THR D 33 -1 N SER D 32 O THR D 40 SHEET 10 AB111 SER D 134 ILE D 137 -1 O SER D 134 N THR D 33 SHEET 11 AB111 THR D 9 PHE D 11 -1 N THR D 9 O ILE D 137 SHEET 1 AB2 6 ASP D 3 TYR D 6 0 SHEET 2 AB2 6 PHE D 141 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB2 6 TYR D 17 ASN D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB2 6 LEU D 100 TYR D 106 -1 O ILE D 103 N ILE D 19 SHEET 5 AB2 6 ARG D 109 GLU D 116 -1 O TRP D 111 N LEU D 104 SHEET 6 AB2 6 THR D 121 ASN D 126 -1 O SER D 125 N ILE D 110 SHEET 1 AB3 2 VAL D 49 VAL D 58 0 SHEET 2 AB3 2 GLU D 61 ASN D 69 -1 O ASN D 69 N VAL D 49 SHEET 1 AB411 ASP E 3 TYR E 6 0 SHEET 2 AB411 PHE E 141 PRO E 145 -1 O PHE E 141 N TYR E 6 SHEET 3 AB411 TYR E 17 ASN E 22 -1 N TRP E 18 O ILE E 144 SHEET 4 AB411 LEU E 100 TYR E 106 -1 O VAL E 101 N ILE E 21 SHEET 5 AB411 ARG E 109 GLU E 116 -1 O TRP E 111 N LEU E 104 SHEET 6 AB411 TYR E 89 SER E 96 1 N THR E 95 O GLY E 115 SHEET 7 AB411 TRP E 74 ARG E 81 -1 N GLU E 78 O ARG E 92 SHEET 8 AB411 TRP E 39 ILE E 45 -1 N ILE E 45 O LYS E 75 SHEET 9 AB411 VAL E 28 THR E 33 -1 N SER E 32 O THR E 40 SHEET 10 AB411 SER E 134 ILE E 137 -1 O SER E 134 N THR E 33 SHEET 11 AB411 THR E 9 PHE E 11 -1 N THR E 9 O ILE E 137 SHEET 1 AB5 6 ASP E 3 TYR E 6 0 SHEET 2 AB5 6 PHE E 141 PRO E 145 -1 O PHE E 141 N TYR E 6 SHEET 3 AB5 6 TYR E 17 ASN E 22 -1 N TRP E 18 O ILE E 144 SHEET 4 AB5 6 LEU E 100 TYR E 106 -1 O VAL E 101 N ILE E 21 SHEET 5 AB5 6 ARG E 109 GLU E 116 -1 O TRP E 111 N LEU E 104 SHEET 6 AB5 6 THR E 121 ASN E 126 -1 O THR E 121 N HIS E 114 SHEET 1 AB6 2 VAL E 49 VAL E 58 0 SHEET 2 AB6 2 GLU E 61 ASN E 69 -1 O ASN E 69 N VAL E 49 SHEET 1 AB711 ASP F 3 TYR F 6 0 SHEET 2 AB711 PHE F 141 PRO F 145 -1 O PHE F 141 N TYR F 6 SHEET 3 AB711 TYR F 17 ASN F 22 -1 N TRP F 18 O ILE F 144 SHEET 4 AB711 LEU F 100 TYR F 106 -1 O VAL F 101 N ILE F 21 SHEET 5 AB711 ARG F 109 GLU F 116 -1 O TRP F 111 N LEU F 104 SHEET 6 AB711 TYR F 89 SER F 96 1 N THR F 95 O GLY F 115 SHEET 7 AB711 TRP F 74 ARG F 81 -1 N GLU F 78 O ARG F 92 SHEET 8 AB711 TRP F 39 ILE F 45 -1 N ILE F 45 O LYS F 75 SHEET 9 AB711 VAL F 28 THR F 33 -1 N SER F 32 O THR F 40 SHEET 10 AB711 SER F 134 ILE F 137 -1 O SER F 134 N THR F 33 SHEET 11 AB711 THR F 9 PHE F 11 -1 N THR F 9 O ILE F 137 SHEET 1 AB8 6 ASP F 3 TYR F 6 0 SHEET 2 AB8 6 PHE F 141 PRO F 145 -1 O PHE F 141 N TYR F 6 SHEET 3 AB8 6 TYR F 17 ASN F 22 -1 N TRP F 18 O ILE F 144 SHEET 4 AB8 6 LEU F 100 TYR F 106 -1 O VAL F 101 N ILE F 21 SHEET 5 AB8 6 ARG F 109 GLU F 116 -1 O TRP F 111 N LEU F 104 SHEET 6 AB8 6 THR F 121 ASN F 126 -1 O THR F 121 N HIS F 114 SHEET 1 AB9 2 VAL F 49 VAL F 58 0 SHEET 2 AB9 2 GLU F 61 ASN F 69 -1 O ASN F 69 N VAL F 49 LINK O3 A2G G 1 C1 GAL G 2 1555 1555 1.44 LINK O6 A2G G 1 C1 NAG G 3 1555 1555 1.46 LINK O3 A2G H 1 C1 GAL H 2 1555 1555 1.44 LINK O6 A2G H 1 C1 NAG H 3 1555 1555 1.45 CISPEP 1 GLY A 4 PRO A 5 0 -0.72 CISPEP 2 THR A 117 PRO A 118 0 2.67 CISPEP 3 GLY B 4 PRO B 5 0 2.17 CISPEP 4 THR B 117 PRO B 118 0 2.63 CISPEP 5 GLY C 4 PRO C 5 0 0.74 CISPEP 6 THR C 117 PRO C 118 0 0.92 CISPEP 7 GLY D 4 PRO D 5 0 0.76 CISPEP 8 THR D 117 PRO D 118 0 3.18 CISPEP 9 GLY E 4 PRO E 5 0 3.58 CISPEP 10 THR E 117 PRO E 118 0 1.97 CISPEP 11 GLY F 4 PRO F 5 0 0.32 CISPEP 12 THR F 117 PRO F 118 0 3.38 CRYST1 66.289 114.550 73.789 90.00 95.96 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015085 0.000000 0.001575 0.00000 SCALE2 0.000000 0.008730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013626 0.00000