HEADER SIGNALING PROTEIN 15-MAY-19 6K2U TITLE CRYSTAL STRUCTURE OF THR66 ADP-RIBOSYLATED UBIQUITIN CAVEAT 6K2U APR B 101 HAS WRONG CHIRALITY AT ATOM C1D COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYUBIQUITIN-C; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS UBIQUITINATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,Y.ZHOU,Y.ZHU REVDAT 4 29-NOV-23 6K2U 1 REMARK REVDAT 3 05-APR-23 6K2U 1 CAVEAT COMPND REMARK HET REVDAT 3 2 1 HETNAM HETSYN LINK SITE REVDAT 3 3 1 ATOM REVDAT 2 10-JUN-20 6K2U 1 JRNL REVDAT 1 18-MAR-20 6K2U 0 JRNL AUTH F.YAN,C.HUANG,X.WANG,J.TAN,S.CHENG,M.WAN,Z.WANG,S.WANG, JRNL AUTH 2 S.LUO,A.LI,X.GUO,M.FENG,X.LIU,Y.ZHU,Y.ZHOU JRNL TITL THREONINE ADP-RIBOSYLATION OF UBIQUITIN BY A BACTERIAL JRNL TITL 2 EFFECTOR FAMILY BLOCKS HOST UBIQUITINATION. JRNL REF MOL.CELL V. 78 641 2020 JRNL REFN ISSN 1097-2765 JRNL PMID 32330457 JRNL DOI 10.1016/J.MOLCEL.2020.03.016 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3228 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 6153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4105 - 4.0537 0.97 1448 162 0.2318 0.2260 REMARK 3 2 4.0537 - 3.2178 1.00 1385 154 0.2223 0.2402 REMARK 3 3 3.2178 - 2.8111 0.99 1355 150 0.2540 0.2963 REMARK 3 4 2.8111 - 2.5541 1.00 1349 150 0.2760 0.3200 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K2U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 715.5 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 715.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6182 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.69300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.14_3228 REMARK 200 STARTING MODEL: 4ZQS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MMT (MALIC ACID, MES AND TRIS REMARK 280 (1:2:2 MOLAR RATIO), PH 5.5 ADJUSTED WITH HCL), 0.1M MAGNESIUM REMARK 280 CHLORIDE, 0.1M ZINC ACETATE 12% PEG8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.76250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.76250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.76250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.76250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 50.76250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.76250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 50.76250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 50.76250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 50.76250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 50.76250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 50.76250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 50.76250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 50.76250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 50.76250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 50.76250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 50.76250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 50.76250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 50.76250 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 76.14375 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 25.38125 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.38125 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 76.14375 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 76.14375 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 76.14375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 25.38125 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 25.38125 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 76.14375 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 25.38125 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 76.14375 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 25.38125 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 76.14375 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 25.38125 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 25.38125 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 25.38125 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 76.14375 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 25.38125 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 76.14375 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 76.14375 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 76.14375 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 25.38125 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 25.38125 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 76.14375 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 76.14375 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 25.38125 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 25.38125 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 25.38125 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 25.38125 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 76.14375 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 25.38125 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 76.14375 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 25.38125 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 76.14375 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 76.14375 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 76.14375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 ARG B 54 NE CZ NH1 NH2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 32 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 58 -9.91 -52.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 18 OE1 REMARK 620 2 GLU B 18 OE2 61.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 24 OE1 REMARK 620 2 ASP B 39 OD1 125.7 REMARK 620 3 ASP B 39 OD2 126.8 10.7 REMARK 620 4 ASP B 52 OD2 96.1 118.9 126.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APR B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 104 DBREF 6K2U B 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQADV 6K2U SER B 0 UNP P0CG48 EXPRESSION TAG SEQRES 1 B 77 SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR SEQRES 2 B 77 ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN SEQRES 3 B 77 VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO SEQRES 4 B 77 ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU SEQRES 5 B 77 ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SEQRES 6 B 77 SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET APR B 101 35 HET ZN B 102 1 HET MG B 103 1 HET MG B 104 1 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 2 APR C15 H23 N5 O14 P2 FORMUL 3 ZN ZN 2+ FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *20(H2 O) HELIX 1 AA1 THR B 22 GLY B 35 1 14 HELIX 2 AA2 PRO B 37 ASP B 39 5 3 HELIX 3 AA3 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 5 THR B 12 VAL B 17 0 SHEET 2 AA1 5 MET B 1 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA1 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 AA1 5 GLN B 41 PHE B 45 -1 N ARG B 42 O VAL B 70 SHEET 5 AA1 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 LINK OG1 THR B 66 C1D APR B 101 1555 1555 1.37 LINK OE1 GLU B 18 MG MG B 103 1555 1555 2.27 LINK OE2 GLU B 18 MG MG B 103 1555 1555 2.01 LINK OE1 GLU B 24 ZN ZN B 102 1555 1555 2.01 LINK OD1 ASP B 39 ZN ZN B 102 1555 14445 2.52 LINK OD2 ASP B 39 ZN ZN B 102 1555 14445 2.14 LINK OD2 ASP B 52 ZN ZN B 102 1555 1555 1.95 LINK O2A APR B 101 MG MG B 104 1555 21455 2.97 SITE 1 AC1 11 PHE B 4 LYS B 6 GLY B 10 ASN B 25 SITE 2 AC1 11 ALA B 28 LYS B 29 GLN B 31 ASP B 32 SITE 3 AC1 11 GLU B 64 THR B 66 MG B 104 SITE 1 AC2 5 GLU B 24 ASP B 39 ASP B 52 HOH B 204 SITE 2 AC2 5 HOH B 211 SITE 1 AC3 4 GLU B 18 HIS B 68 HOH B 203 HOH B 208 SITE 1 AC4 4 ASP B 21 LYS B 29 APR B 101 HOH B 220 CRYST1 101.525 101.525 101.525 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009850 0.00000