HEADER CHAPERONE 16-MAY-19 6K39 TITLE STRUCTURAL ANALYSIS OF AIMP2-DX2 AND HSP70 INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK 70 KDA PROTEIN 1A,AMINOACYL TRNA SYNTHASE COMPND 3 COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN 2; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: HSP70 SUBSTRATE BINDING DOMAIN/PEPTIDE SEQUENCE OF DX2; COMPND 6 SYNONYM: HEAT SHOCK 70 KDA PROTEIN 1,HSP70.1,MULTISYNTHASE COMPLEX COMPND 7 AUXILIARY COMPONENT P38,PROTEIN JTV-1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSPA1A, HSP72, HSPA1, HSX70, AIMP2, JTV1, PRO0992; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: BL21_CODONPLUS(DE3)-RIPL KEYWDS HSP70, AIMP2-DX2, SUBSTRATE BINDING DOMAIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.CHO,S.Y.SON,Y.H.JEON REVDAT 5 22-NOV-23 6K39 1 REMARK REVDAT 4 01-JAN-20 6K39 1 JRNL REVDAT 3 18-DEC-19 6K39 1 JRNL REVDAT 2 20-NOV-19 6K39 1 JRNL REVDAT 1 02-OCT-19 6K39 0 JRNL AUTH S.LIM,H.Y.CHO,D.G.KIM,Y.ROH,S.Y.SON,A.U.MUSHTAQ,M.KIM, JRNL AUTH 2 D.BHATTARAI,A.SIVARAMAN,Y.LEE,J.LEE,W.S.YANG,H.K.KIM, JRNL AUTH 3 M.H.KIM,K.LEE,Y.H.JEON,S.KIM JRNL TITL TARGETING THE INTERACTION OF AIMP2-DX2 WITH HSP70 SUPPRESSES JRNL TITL 2 CANCER DEVELOPMENT. JRNL REF NAT.CHEM.BIOL. V. 16 31 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 31792442 JRNL DOI 10.1038/S41589-019-0415-2 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.355 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 57153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.499 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6367 - 3.3674 1.00 4206 153 0.1558 0.1760 REMARK 3 2 3.3674 - 2.6737 1.00 4010 145 0.1639 0.1952 REMARK 3 3 2.6737 - 2.3360 1.00 4017 146 0.1610 0.1885 REMARK 3 4 2.3360 - 2.1225 1.00 3976 144 0.1565 0.1755 REMARK 3 5 2.1225 - 1.9704 1.00 3959 143 0.1625 0.1835 REMARK 3 6 1.9704 - 1.8543 1.00 3934 144 0.1728 0.2037 REMARK 3 7 1.8543 - 1.7615 1.00 3912 141 0.1766 0.2015 REMARK 3 8 1.7615 - 1.6848 1.00 3930 143 0.1762 0.2033 REMARK 3 9 1.6848 - 1.6199 1.00 3923 142 0.1798 0.2244 REMARK 3 10 1.6199 - 1.5641 1.00 3895 141 0.1811 0.1764 REMARK 3 11 1.5641 - 1.5152 1.00 3914 141 0.1872 0.2247 REMARK 3 12 1.5152 - 1.4718 1.00 3888 141 0.1944 0.2164 REMARK 3 13 1.4718 - 1.4331 0.99 3895 142 0.1997 0.2133 REMARK 3 14 1.4331 - 1.3981 0.94 3694 134 0.2207 0.2391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.115 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2372 REMARK 3 ANGLE : 0.897 3210 REMARK 3 CHIRALITY : 0.079 373 REMARK 3 PLANARITY : 0.006 427 REMARK 3 DIHEDRAL : 18.860 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 536 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): 158.4310 -12.0060 192.0413 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.1127 REMARK 3 T33: 0.1237 T12: -0.0082 REMARK 3 T13: 0.0101 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.9793 L22: 7.1313 REMARK 3 L33: 3.2481 L12: -3.3240 REMARK 3 L13: -1.5830 L23: 1.1046 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: -0.3395 S13: 0.4760 REMARK 3 S21: 0.1236 S22: 0.2367 S23: -0.5164 REMARK 3 S31: -0.1246 S32: 0.1614 S33: -0.0904 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 132.2471 18.7206 202.3159 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0639 REMARK 3 T33: 0.0473 T12: 0.0256 REMARK 3 T13: 0.0051 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 5.6544 L22: 4.9761 REMARK 3 L33: 5.7163 L12: 2.1828 REMARK 3 L13: 2.3218 L23: 1.9896 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.0418 S13: 0.1791 REMARK 3 S21: 0.1641 S22: 0.0347 S23: -0.0726 REMARK 3 S31: -0.0643 S32: 0.2466 S33: -0.0189 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 137.6586 19.6158 201.6133 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.1805 REMARK 3 T33: 0.1060 T12: 0.0021 REMARK 3 T13: -0.0133 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 5.6085 L22: 3.7744 REMARK 3 L33: 1.6774 L12: 4.5860 REMARK 3 L13: 1.1283 L23: 0.9749 REMARK 3 S TENSOR REMARK 3 S11: 0.1108 S12: -0.0867 S13: -0.1717 REMARK 3 S21: 0.0807 S22: 0.0244 S23: -0.2276 REMARK 3 S31: 0.0702 S32: 0.4317 S33: -0.1806 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 126.5801 15.0249 195.9751 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.0802 REMARK 3 T33: 0.1052 T12: 0.0151 REMARK 3 T13: -0.0043 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.4850 L22: 1.6135 REMARK 3 L33: 1.4119 L12: 0.8213 REMARK 3 L13: 0.9247 L23: 0.8475 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: -0.0396 S13: -0.0537 REMARK 3 S21: 0.0859 S22: 0.0052 S23: -0.0180 REMARK 3 S31: 0.1133 S32: -0.0600 S33: -0.0815 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 454 THROUGH 462 ) REMARK 3 ORIGIN FOR THE GROUP (A): 121.0136 22.1097 197.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.1210 T22: 0.0529 REMARK 3 T33: 0.1406 T12: 0.0202 REMARK 3 T13: 0.0155 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 6.9609 L22: 0.6100 REMARK 3 L33: 4.5997 L12: -0.1926 REMARK 3 L13: 2.7947 L23: 0.2397 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: -0.3302 S13: 0.0116 REMARK 3 S21: 0.0468 S22: -0.0346 S23: 0.2602 REMARK 3 S31: 0.0782 S32: -0.6120 S33: -0.2379 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 463 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 128.3247 21.8098 189.1067 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.0858 REMARK 3 T33: 0.0811 T12: 0.0152 REMARK 3 T13: 0.0161 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.6752 L22: 5.2314 REMARK 3 L33: 4.3044 L12: 2.8267 REMARK 3 L13: 2.1626 L23: 3.8892 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: 0.0853 S13: 0.0411 REMARK 3 S21: -0.2345 S22: 0.1465 S23: -0.0227 REMARK 3 S31: -0.1538 S32: 0.1126 S33: -0.0639 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 493 THROUGH 503 ) REMARK 3 ORIGIN FOR THE GROUP (A): 124.8625 26.2279 187.7007 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.0977 REMARK 3 T33: 0.1154 T12: 0.0250 REMARK 3 T13: 0.0222 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.1639 L22: 3.4555 REMARK 3 L33: 8.4820 L12: 1.1298 REMARK 3 L13: 3.3165 L23: 2.9903 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: 0.0822 S13: 0.0352 REMARK 3 S21: -0.3406 S22: 0.0501 S23: 0.0522 REMARK 3 S31: -0.0650 S32: -0.0273 S33: -0.1325 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 504 THROUGH 524 ) REMARK 3 ORIGIN FOR THE GROUP (A): 133.2450 22.7354 214.4679 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1965 REMARK 3 T33: 0.1746 T12: -0.0224 REMARK 3 T13: -0.0216 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 3.8633 L22: 3.9841 REMARK 3 L33: 5.5208 L12: -3.7594 REMARK 3 L13: 2.4440 L23: -3.5433 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: -0.7013 S13: -0.3861 REMARK 3 S21: 0.3533 S22: 0.3239 S23: 0.3031 REMARK 3 S31: -0.0218 S32: -0.3056 S33: -0.3549 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 525 THROUGH 535 ) REMARK 3 ORIGIN FOR THE GROUP (A): 133.1406 3.1357 207.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.3569 T22: 0.1690 REMARK 3 T33: 0.3014 T12: -0.0064 REMARK 3 T13: -0.0972 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 5.7041 L22: 6.7443 REMARK 3 L33: 4.0155 L12: 4.2784 REMARK 3 L13: 4.2927 L23: 4.8868 REMARK 3 S TENSOR REMARK 3 S11: 0.3178 S12: 0.0342 S13: -0.5518 REMARK 3 S21: 0.9487 S22: 0.0534 S23: -0.5175 REMARK 3 S31: 0.7176 S32: 0.3139 S33: -0.2838 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 536 THROUGH 545 ) REMARK 3 ORIGIN FOR THE GROUP (A): 121.3766 -3.1344 195.6311 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.1455 REMARK 3 T33: 0.1200 T12: -0.0118 REMARK 3 T13: -0.0074 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 6.8992 L22: 6.6407 REMARK 3 L33: 4.2663 L12: 4.2055 REMARK 3 L13: -1.3254 L23: 1.1443 REMARK 3 S TENSOR REMARK 3 S11: -0.3237 S12: 0.6107 S13: 0.3917 REMARK 3 S21: -0.2504 S22: 0.3616 S23: 0.4544 REMARK 3 S31: -0.0784 S32: -0.3743 S33: 0.0079 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 146.7557 11.5565 185.5754 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0709 REMARK 3 T33: 0.0686 T12: -0.0165 REMARK 3 T13: 0.0039 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 5.9767 L22: 3.5616 REMARK 3 L33: 1.7746 L12: -4.0941 REMARK 3 L13: 1.6007 L23: -1.1818 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: 0.0921 S13: -0.0904 REMARK 3 S21: -0.1469 S22: -0.0319 S23: 0.0761 REMARK 3 S31: 0.0691 S32: -0.0452 S33: -0.0605 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 422 THROUGH 492 ) REMARK 3 ORIGIN FOR THE GROUP (A): 155.2513 10.4892 194.1883 REMARK 3 T TENSOR REMARK 3 T11: 0.0557 T22: 0.0747 REMARK 3 T33: 0.0797 T12: -0.0167 REMARK 3 T13: 0.0090 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.2021 L22: 2.6898 REMARK 3 L33: 1.2670 L12: -0.9435 REMARK 3 L13: 0.5108 L23: -1.0352 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: 0.0134 S13: -0.0203 REMARK 3 S21: 0.1154 S22: 0.0403 S23: -0.0321 REMARK 3 S31: -0.0332 S32: -0.0261 S33: -0.0247 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 493 THROUGH 511 ) REMARK 3 ORIGIN FOR THE GROUP (A): 154.7346 19.8998 190.0840 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.0920 REMARK 3 T33: 0.1066 T12: -0.0075 REMARK 3 T13: 0.0201 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.1218 L22: 3.0986 REMARK 3 L33: 4.6397 L12: -0.5317 REMARK 3 L13: 2.8526 L23: -2.4005 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0474 S13: 0.0936 REMARK 3 S21: 0.1223 S22: -0.0053 S23: 0.0112 REMARK 3 S31: 0.0027 S32: 0.0500 S33: -0.0341 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 512 THROUGH 524 ) REMARK 3 ORIGIN FOR THE GROUP (A): 147.4743 10.6097 170.5185 REMARK 3 T TENSOR REMARK 3 T11: 0.2840 T22: 0.1988 REMARK 3 T33: 0.1642 T12: -0.0137 REMARK 3 T13: 0.0115 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 6.6050 L22: 3.7594 REMARK 3 L33: 2.2153 L12: 4.7935 REMARK 3 L13: 1.5411 L23: 0.6132 REMARK 3 S TENSOR REMARK 3 S11: -0.3863 S12: 0.4845 S13: -0.2345 REMARK 3 S21: -0.9309 S22: 0.6155 S23: -0.5599 REMARK 3 S31: 0.0325 S32: 0.2321 S33: -0.1890 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 525 THROUGH 535 ) REMARK 3 ORIGIN FOR THE GROUP (A): 147.2550 -4.3324 180.1227 REMARK 3 T TENSOR REMARK 3 T11: 0.1922 T22: 0.1608 REMARK 3 T33: 0.1794 T12: 0.0133 REMARK 3 T13: -0.0008 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.7169 L22: 9.8361 REMARK 3 L33: 4.1505 L12: -3.0569 REMARK 3 L13: 3.9832 L23: -4.8030 REMARK 3 S TENSOR REMARK 3 S11: -0.1849 S12: -0.1538 S13: -0.0616 REMARK 3 S21: -0.2885 S22: 0.1008 S23: -0.1966 REMARK 3 S31: -0.1042 S32: -0.6506 S33: 0.1068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' REMARK 3 SELECTION : (CHAIN 'B' AND RESID 395 THROUGH 545) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : IN-VACUUM UNDULATOR 20 (IVU 20), REMARK 200 1.8M REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.398 REMARK 200 RESOLUTION RANGE LOW (A) : 25.632 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.09201 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.77640 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.12_2829 REMARK 200 STARTING MODEL: 6JPV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500, SUCCINIC ACID, SODIUM REMARK 280 DIHYDROGEN PHOSPHATE, GLYCINE, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.05550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.79050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.05550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.79050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 394 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 814 DISTANCE = 5.88 ANGSTROMS DBREF 6K39 A 395 537 UNP P0DMV8 HS71A_HUMAN 395 537 DBREF 6K39 A 538 545 UNP Q13155 AIMP2_HUMAN 25 32 DBREF 6K39 B 395 537 UNP P0DMV8 HS71A_HUMAN 395 537 DBREF 6K39 B 538 545 UNP Q13155 AIMP2_HUMAN 25 32 SEQADV 6K39 SER A 394 UNP P0DMV8 EXPRESSION TAG SEQADV 6K39 SER B 394 UNP P0DMV8 EXPRESSION TAG SEQRES 1 A 152 SER ASP VAL ALA PRO LEU SER LEU GLY LEU GLU THR ALA SEQRES 2 A 152 GLY GLY VAL MET THR ALA LEU ILE LYS ARG ASN SER THR SEQRES 3 A 152 ILE PRO THR LYS GLN THR GLN ILE PHE THR THR TYR SER SEQRES 4 A 152 ASP ASN GLN PRO GLY VAL LEU ILE GLN VAL TYR GLU GLY SEQRES 5 A 152 GLU ARG ALA MET THR LYS ASP ASN ASN LEU LEU GLY ARG SEQRES 6 A 152 PHE GLU LEU SER GLY ILE PRO PRO ALA PRO ARG GLY VAL SEQRES 7 A 152 PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASN GLY SEQRES 8 A 152 ILE LEU ASN VAL THR ALA THR ASP LYS SER THR GLY LYS SEQRES 9 A 152 ALA ASN LYS ILE THR ILE THR ASN ASP LYS GLY ARG LEU SEQRES 10 A 152 SER LYS GLU GLU ILE GLU ARG MET VAL GLN GLU ALA GLU SEQRES 11 A 152 LYS TYR LYS ALA GLU ASP GLU VAL GLN ARG GLU ARG VAL SEQRES 12 A 152 SER TYR ARG LEU PRO ASN VAL HIS GLY SEQRES 1 B 152 SER ASP VAL ALA PRO LEU SER LEU GLY LEU GLU THR ALA SEQRES 2 B 152 GLY GLY VAL MET THR ALA LEU ILE LYS ARG ASN SER THR SEQRES 3 B 152 ILE PRO THR LYS GLN THR GLN ILE PHE THR THR TYR SER SEQRES 4 B 152 ASP ASN GLN PRO GLY VAL LEU ILE GLN VAL TYR GLU GLY SEQRES 5 B 152 GLU ARG ALA MET THR LYS ASP ASN ASN LEU LEU GLY ARG SEQRES 6 B 152 PHE GLU LEU SER GLY ILE PRO PRO ALA PRO ARG GLY VAL SEQRES 7 B 152 PRO GLN ILE GLU VAL THR PHE ASP ILE ASP ALA ASN GLY SEQRES 8 B 152 ILE LEU ASN VAL THR ALA THR ASP LYS SER THR GLY LYS SEQRES 9 B 152 ALA ASN LYS ILE THR ILE THR ASN ASP LYS GLY ARG LEU SEQRES 10 B 152 SER LYS GLU GLU ILE GLU ARG MET VAL GLN GLU ALA GLU SEQRES 11 B 152 LYS TYR LYS ALA GLU ASP GLU VAL GLN ARG GLU ARG VAL SEQRES 12 B 152 SER TYR ARG LEU PRO ASN VAL HIS GLY FORMUL 3 HOH *434(H2 O) HELIX 1 AA1 MET A 449 ASN A 453 5 5 HELIX 2 AA2 ASN A 505 ARG A 509 5 5 HELIX 3 AA3 SER A 511 TYR A 525 1 15 HELIX 4 AA4 TYR A 525 VAL A 536 1 12 HELIX 5 AA5 SER A 537 ARG A 539 5 3 HELIX 6 AA6 MET B 449 ASN B 453 5 5 HELIX 7 AA7 ASN B 505 ARG B 509 5 5 HELIX 8 AA8 SER B 511 TYR B 525 1 15 HELIX 9 AA9 TYR B 525 VAL B 536 1 12 HELIX 10 AB1 SER B 537 ARG B 539 5 3 SHEET 1 AA1 4 VAL A 409 ILE A 414 0 SHEET 2 AA1 4 LEU A 401 THR A 405 -1 N LEU A 401 O LEU A 413 SHEET 3 AA1 4 GLY A 437 GLU A 444 -1 O TYR A 443 N GLY A 402 SHEET 4 AA1 4 ASN A 454 SER A 462 -1 O LEU A 456 N VAL A 442 SHEET 1 AA2 4 THR A 422 PHE A 428 0 SHEET 2 AA2 4 ILE A 474 ILE A 480 -1 O ILE A 474 N PHE A 428 SHEET 3 AA2 4 LEU A 486 ASP A 492 -1 O ASN A 487 N ASP A 479 SHEET 4 AA2 4 ALA A 498 ILE A 503 -1 O ILE A 503 N LEU A 486 SHEET 1 AA3 4 VAL B 409 ILE B 414 0 SHEET 2 AA3 4 LEU B 401 THR B 405 -1 N LEU B 401 O LEU B 413 SHEET 3 AA3 4 GLY B 437 GLU B 444 -1 O TYR B 443 N GLY B 402 SHEET 4 AA3 4 ASN B 454 SER B 462 -1 O LEU B 456 N VAL B 442 SHEET 1 AA4 4 THR B 422 PHE B 428 0 SHEET 2 AA4 4 ILE B 474 ILE B 480 -1 O ILE B 474 N PHE B 428 SHEET 3 AA4 4 LEU B 486 ASP B 492 -1 O ASN B 487 N ASP B 479 SHEET 4 AA4 4 ALA B 498 ILE B 503 -1 O ILE B 503 N LEU B 486 CISPEP 1 ILE A 420 PRO A 421 0 2.49 CISPEP 2 ILE B 420 PRO B 421 0 2.78 CRYST1 56.111 111.581 45.571 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017822 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008962 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021944 0.00000