HEADER OXIDOREDUCTASE 18-MAY-19 6K3G TITLE CRYSTAL STRUCTURE OF 10-HYDROXYGERANIOL DEHYDROGENASE FROM TITLE 2 CANTHARANTHUS ROSEUS IN COMPLEX WITH NADP+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: 10-HYDROXYGERANIOL OXIDOREDUCTASE; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: 10-HYDROXYGERANIOL DEHYDROGENASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CATHARANTHUS ROSEUS; SOURCE 3 ORGANISM_COMMON: MADAGASCAR PERIWINKLE; SOURCE 4 ORGANISM_TAXID: 4058; SOURCE 5 GENE: 10HGO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET KEYWDS 10-HYDROXYGERANIOL, MEDIUM CHAIN DEHYDROGENASE/REDUCTASE, KEYWDS 2 CANTHARANTHUS ROSEUS, MIA BIOSYNTHESIS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.SANDHOLU,P.M.SHARMILA,H.V.THULASIRAM,K.A.KULKARNI REVDAT 3 22-NOV-23 6K3G 1 REMARK REVDAT 2 07-APR-21 6K3G 1 JRNL REVDAT 1 25-MAR-20 6K3G 0 JRNL AUTH A.S.SANDHOLU,S.P.MUJAWAR,K.RAMAKRISHNAN,H.V.THULASIRAM, JRNL AUTH 2 K.KULKARNI JRNL TITL STRUCTURAL STUDIES ON 10-HYDROXYGERANIOL DEHYDROGENASE: A JRNL TITL 2 NOVEL LINEAR SUBSTRATE-SPECIFIC DEHYDROGENASE FROM JRNL TITL 3 CATHARANTHUS ROSEUS. JRNL REF PROTEINS V. 88 1197 2020 JRNL REFN ESSN 1097-0134 JRNL PMID 32181958 JRNL DOI 10.1002/PROT.25891 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15375 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2689 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.75000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.408 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.264 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.341 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2802 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2632 ; 0.011 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3810 ; 2.000 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6114 ; 1.348 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 8.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.879 ;22.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;19.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.332 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3081 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 554 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1423 ; 1.491 ; 2.190 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1422 ; 1.489 ; 2.190 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1777 ; 2.569 ; 3.283 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1778 ; 2.569 ; 3.284 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1379 ; 1.321 ; 2.389 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1380 ; 1.321 ; 2.388 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2034 ; 2.247 ; 3.530 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11955 ; 5.758 ;41.128 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 11952 ; 5.756 ;41.109 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 401 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4559 1.3996 -20.5336 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.6147 REMARK 3 T33: 0.3911 T12: -0.1394 REMARK 3 T13: -0.0073 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.8296 L22: 0.0375 REMARK 3 L33: 3.1389 L12: 0.0508 REMARK 3 L13: -0.6194 L23: -0.2224 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: 0.4358 S13: 0.1476 REMARK 3 S21: 0.0488 S22: -0.0488 S23: 0.0187 REMARK 3 S31: 0.0331 S32: 0.0471 S33: 0.1293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6K3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0393 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL FIXED REMARK 200 -EXIT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 46.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.84900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.1 REMARK 200 STARTING MODEL: 1YQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 6000, 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, SODIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 168.51533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.25767 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 84.25767 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 168.51533 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -84.25767 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 ALA B 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR B 66 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 282 CD CE NZ REMARK 470 LYS B 346 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 28 108.34 -164.44 REMARK 500 PHE B 30 -155.62 -143.10 REMARK 500 CYS B 166 -70.32 -119.62 REMARK 500 SER B 216 92.27 -160.38 REMARK 500 GLU B 225 -61.16 -95.93 REMARK 500 ALA B 245 135.37 -39.92 REMARK 500 HIS B 259 162.80 178.08 REMARK 500 ILE B 303 -131.46 47.87 REMARK 500 ASP B 344 41.99 -101.23 REMARK 500 TYR B 347 -56.21 80.65 REMARK 500 LYS B 358 44.26 -109.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 50 SG REMARK 620 2 HIS B 72 NE2 104.1 REMARK 620 3 CYS B 166 SG 135.7 106.8 REMARK 620 4 HOH B 514 O 120.1 99.1 85.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 103 SG REMARK 620 2 CYS B 106 SG 109.0 REMARK 620 3 CYS B 109 SG 111.3 116.0 REMARK 620 4 CYS B 117 SG 108.2 104.2 107.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 DBREF1 6K3G B 1 360 UNP A0A067YF90_CATRO DBREF2 6K3G B A0A067YF90 1 360 SEQRES 1 B 360 MET ALA LYS SER PRO GLU VAL GLU HIS PRO VAL LYS ALA SEQRES 2 B 360 PHE GLY TRP ALA ALA ARG ASP THR SER GLY HIS LEU SER SEQRES 3 B 360 PRO PHE HIS PHE SER ARG ARG ALA THR GLY GLU HIS ASP SEQRES 4 B 360 VAL GLN PHE LYS VAL LEU TYR CYS GLY ILE CYS HIS SER SEQRES 5 B 360 ASP LEU HIS MET ILE LYS ASN GLU TRP GLY PHE THR LYS SEQRES 6 B 360 TYR PRO ILE VAL PRO GLY HIS GLU ILE VAL GLY ILE VAL SEQRES 7 B 360 THR GLU VAL GLY SER LYS VAL GLU LYS PHE LYS VAL GLY SEQRES 8 B 360 ASP LYS VAL GLY VAL GLY CYS LEU VAL GLY SER CYS ARG SEQRES 9 B 360 LYS CYS ASP MET CYS THR LYS ASP LEU GLU ASN TYR CYS SEQRES 10 B 360 PRO GLY GLN ILE LEU THR TYR SER ALA THR TYR THR ASP SEQRES 11 B 360 GLY THR THR THR TYR GLY GLY TYR SER ASP LEU MET VAL SEQRES 12 B 360 ALA ASP GLU HIS PHE VAL ILE ARG TRP PRO GLU ASN LEU SEQRES 13 B 360 PRO MET ASP ILE GLY ALA PRO LEU LEU CYS ALA GLY ILE SEQRES 14 B 360 THR THR TYR SER PRO LEU ARG TYR PHE GLY LEU ASP LYS SEQRES 15 B 360 PRO GLY THR HIS VAL GLY VAL VAL GLY LEU GLY GLY LEU SEQRES 16 B 360 GLY HIS VAL ALA VAL LYS PHE ALA LYS ALA PHE GLY ALA SEQRES 17 B 360 LYS VAL THR VAL ILE SER THR SER GLU SER LYS LYS GLN SEQRES 18 B 360 GLU ALA LEU GLU LYS LEU GLY ALA ASP SER PHE LEU VAL SEQRES 19 B 360 SER ARG ASP PRO GLU GLN MET LYS ALA ALA ALA ALA SER SEQRES 20 B 360 LEU ASP GLY ILE ILE ASP THR VAL SER ALA ILE HIS PRO SEQRES 21 B 360 ILE MET PRO LEU LEU SER ILE LEU LYS SER HIS GLY LYS SEQRES 22 B 360 LEU ILE LEU VAL GLY ALA PRO GLU LYS PRO LEU GLU LEU SEQRES 23 B 360 PRO SER PHE PRO LEU ILE ALA GLY ARG LYS ILE ILE ALA SEQRES 24 B 360 GLY SER ALA ILE GLY GLY LEU LYS GLU THR GLN GLU MET SEQRES 25 B 360 ILE ASP PHE ALA ALA LYS HIS ASN VAL LEU PRO ASP VAL SEQRES 26 B 360 GLU LEU VAL SER MET ASP TYR VAL ASN THR ALA MET GLU SEQRES 27 B 360 ARG LEU LEU LYS ALA ASP VAL LYS TYR ARG PHE VAL ILE SEQRES 28 B 360 ASP VAL ALA ASN THR LEU LYS SER ALA HET NAP B 401 48 HET ZN B 402 1 HET ZN B 403 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ZN ZINC ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *28(H2 O) HELIX 1 AA1 CYS B 50 LYS B 58 1 9 HELIX 2 AA2 CYS B 106 LYS B 111 1 6 HELIX 3 AA3 ASP B 112 CYS B 117 5 6 HELIX 4 AA4 PRO B 157 ALA B 162 1 6 HELIX 5 AA5 PRO B 163 LEU B 165 5 3 HELIX 6 AA6 CYS B 166 PHE B 178 1 13 HELIX 7 AA7 GLY B 193 GLY B 207 1 15 HELIX 8 AA8 SER B 216 SER B 218 5 3 HELIX 9 AA9 LYS B 219 GLU B 225 1 7 HELIX 10 AB1 ASP B 237 ALA B 245 1 9 HELIX 11 AB2 ILE B 261 ILE B 267 1 7 HELIX 12 AB3 PRO B 287 ARG B 295 1 9 HELIX 13 AB4 GLY B 305 HIS B 319 1 15 HELIX 14 AB5 SER B 329 ASP B 331 5 3 HELIX 15 AB6 TYR B 332 LYS B 342 1 11 HELIX 16 AB7 VAL B 353 LEU B 357 1 5 SHEET 1 AA1 2 VAL B 11 ALA B 18 0 SHEET 2 AA1 2 LEU B 25 ARG B 32 -1 O PHE B 30 N ALA B 13 SHEET 1 AA2 5 LEU B 141 ASP B 145 0 SHEET 2 AA2 5 ASP B 39 GLY B 48 -1 N VAL B 40 O ALA B 144 SHEET 3 AA2 5 ILE B 74 VAL B 81 -1 O GLU B 80 N GLN B 41 SHEET 4 AA2 5 LYS B 93 VAL B 96 -1 O VAL B 94 N GLY B 76 SHEET 5 AA2 5 VAL B 149 ARG B 151 -1 O ILE B 150 N GLY B 95 SHEET 1 AA3 4 LEU B 141 ASP B 145 0 SHEET 2 AA3 4 ASP B 39 GLY B 48 -1 N VAL B 40 O ALA B 144 SHEET 3 AA3 4 ARG B 348 ASP B 352 -1 O ILE B 351 N CYS B 47 SHEET 4 AA3 4 VAL B 325 VAL B 328 1 N VAL B 328 O ASP B 352 SHEET 1 AA4 2 LEU B 99 GLY B 101 0 SHEET 2 AA4 2 ILE B 121 LEU B 122 -1 O ILE B 121 N GLY B 101 SHEET 1 AA5 6 SER B 231 VAL B 234 0 SHEET 2 AA5 6 LYS B 209 SER B 214 1 N VAL B 212 O LEU B 233 SHEET 3 AA5 6 HIS B 186 VAL B 190 1 N VAL B 187 O THR B 211 SHEET 4 AA5 6 LEU B 248 ASP B 253 1 O GLY B 250 N GLY B 188 SHEET 5 AA5 6 LEU B 268 LEU B 276 1 O LYS B 269 N LEU B 248 SHEET 6 AA5 6 ILE B 297 GLY B 300 1 O ALA B 299 N LEU B 276 LINK SG CYS B 50 ZN ZN B 402 1555 1555 2.34 LINK NE2 HIS B 72 ZN ZN B 402 1555 1555 2.25 LINK SG CYS B 103 ZN ZN B 403 1555 1555 2.47 LINK SG CYS B 106 ZN ZN B 403 1555 1555 2.42 LINK SG CYS B 109 ZN ZN B 403 1555 1555 2.14 LINK SG CYS B 117 ZN ZN B 403 1555 1555 2.17 LINK SG CYS B 166 ZN ZN B 402 1555 1555 1.94 LINK ZN ZN B 402 O HOH B 514 1555 1555 2.43 CISPEP 1 TYR B 66 PRO B 67 0 6.31 SITE 1 AC1 31 HIS B 51 SER B 52 HIS B 55 TRP B 61 SITE 2 AC1 31 CYS B 166 THR B 170 GLY B 191 LEU B 192 SITE 3 AC1 31 GLY B 193 GLY B 194 LEU B 195 SER B 214 SITE 4 AC1 31 THR B 215 SER B 216 LYS B 219 THR B 254 SITE 5 AC1 31 VAL B 255 SER B 256 ALA B 257 VAL B 277 SITE 6 AC1 31 GLY B 278 ALA B 279 ILE B 292 SER B 301 SITE 7 AC1 31 ALA B 302 ILE B 303 LEU B 340 ARG B 348 SITE 8 AC1 31 ZN B 402 HOH B 506 HOH B 507 SITE 1 AC2 6 CYS B 50 SER B 52 HIS B 72 CYS B 166 SITE 2 AC2 6 NAP B 401 HOH B 514 SITE 1 AC3 5 CYS B 103 ARG B 104 CYS B 106 CYS B 109 SITE 2 AC3 5 CYS B 117 CRYST1 53.180 53.180 252.773 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018804 0.010857 0.000000 0.00000 SCALE2 0.000000 0.021713 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003956 0.00000