HEADER MEMBRANE PROTEIN 24-MAY-19 6K4J TITLE CRYSTAL STRUCTURE OF THE THE CD9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD9 ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5H9 ANTIGEN,CELL GROWTH-INHIBITING GENE 2 PROTEIN,LEUKOCYTE COMPND 5 ANTIGEN MIC3,MOTILITY-RELATED PROTEIN,MRP-1,TETRASPANIN-29,TSPAN-29, COMPND 6 P24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD9, MIC3, TSPAN29, GIG2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PFASTBAC KEYWDS MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.UMEDA,T.NISHIZAWA,K.SATO,O.NUREKI REVDAT 1 13-MAY-20 6K4J 0 JRNL AUTH R.UMEDA,Y.SATOUH,M.TAKEMOTO,Y.NAKADA-NAKURA,K.LIU, JRNL AUTH 2 T.YOKOYAMA,M.SHIROUZU,S.IWATA,N.NOMURA,K.SATO,M.IKAWA, JRNL AUTH 3 T.NISHIZAWA,O.NUREKI JRNL TITL STRUCTURAL INSIGHTS INTO TETRASPANIN CD9 FUNCTION. JRNL REF NAT COMMUN V. 11 1606 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32231207 JRNL DOI 10.1038/S41467-020-15459-7 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4980 - 5.1633 1.00 1424 159 0.2499 0.2571 REMARK 3 2 5.1633 - 4.0993 1.00 1363 150 0.2451 0.2561 REMARK 3 3 4.0993 - 3.5815 1.00 1351 151 0.2476 0.2662 REMARK 3 4 3.5815 - 3.2541 1.00 1325 147 0.2697 0.3305 REMARK 3 5 3.2541 - 3.0210 1.00 1316 147 0.2944 0.3454 REMARK 3 6 3.0210 - 2.8429 1.00 1329 147 0.2924 0.3402 REMARK 3 7 2.8429 - 2.7005 0.97 1278 142 0.3370 0.4228 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10431 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.498 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 57.93 REMARK 200 R MERGE (I) : 0.05130 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 59.79 REMARK 200 R MERGE FOR SHELL (I) : 3.13500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 200, PH 6.5, LIPIDIC CUBIC PHASE, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.70000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.70000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.59000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 ARG A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 GLU A 226 REMARK 465 MET A 227 REMARK 465 VAL A 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 ASN A 51 CG OD1 ND2 REMARK 470 ASN A 52 CG OD1 ND2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 SER A 164 OG REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 ASP A 171 CG OD1 OD2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 PHE A 193 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 219 C1 PLM A 301 1.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 46 -71.87 -129.05 REMARK 500 ASN A 52 -140.65 56.95 REMARK 500 ASP A 136 -155.94 -103.97 REMARK 500 LYS A 169 31.14 -80.35 REMARK 500 LYS A 192 17.16 -148.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM A 301 REMARK 610 OLC A 302 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 303 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 174 OE1 REMARK 620 2 GLU A 174 OE2 59.0 REMARK 620 3 GLU A 187 OE1 116.4 122.7 REMARK 620 4 GLU A 187 OE2 129.0 77.5 65.1 REMARK 620 5 HIS A 113 NE2 98.9 87.3 35.5 50.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 303 DBREF 6K4J A 1 228 UNP P21926 CD9_HUMAN 1 228 SEQADV 6K4J GLY A -4 UNP P21926 EXPRESSION TAG SEQADV 6K4J SER A -3 UNP P21926 EXPRESSION TAG SEQADV 6K4J ARG A -2 UNP P21926 EXPRESSION TAG SEQADV 6K4J GLU A -1 UNP P21926 EXPRESSION TAG SEQADV 6K4J PHE A 0 UNP P21926 EXPRESSION TAG SEQADV 6K4J A UNP P21926 THR 175 DELETION SEQADV 6K4J A UNP P21926 PHE 176 DELETION SEQADV 6K4J A UNP P21926 THR 177 DELETION SEQADV 6K4J A UNP P21926 VAL 178 DELETION SEQADV 6K4J A UNP P21926 LYS 179 DELETION SEQRES 1 A 228 GLY SER ARG GLU PHE MET PRO VAL LYS GLY GLY THR LYS SEQRES 2 A 228 CYS ILE LYS TYR LEU LEU PHE GLY PHE ASN PHE ILE PHE SEQRES 3 A 228 TRP LEU ALA GLY ILE ALA VAL LEU ALA ILE GLY LEU TRP SEQRES 4 A 228 LEU ARG PHE ASP SER GLN THR LYS SER ILE PHE GLU GLN SEQRES 5 A 228 GLU THR ASN ASN ASN ASN SER SER PHE TYR THR GLY VAL SEQRES 6 A 228 TYR ILE LEU ILE GLY ALA GLY ALA LEU MET MET LEU VAL SEQRES 7 A 228 GLY PHE LEU GLY CYS CYS GLY ALA VAL GLN GLU SER GLN SEQRES 8 A 228 CYS MET LEU GLY LEU PHE PHE GLY PHE LEU LEU VAL ILE SEQRES 9 A 228 PHE ALA ILE GLU ILE ALA ALA ALA ILE TRP GLY TYR SER SEQRES 10 A 228 HIS LYS ASP GLU VAL ILE LYS GLU VAL GLN GLU PHE TYR SEQRES 11 A 228 LYS ASP THR TYR ASN LYS LEU LYS THR LYS ASP GLU PRO SEQRES 12 A 228 GLN ARG GLU THR LEU LYS ALA ILE HIS TYR ALA LEU ASN SEQRES 13 A 228 CYS CYS GLY LEU ALA GLY GLY VAL GLU GLN PHE ILE SER SEQRES 14 A 228 ASP ILE CYS PRO LYS LYS ASP VAL LEU GLU SER CYS PRO SEQRES 15 A 228 ASP ALA ILE LYS GLU VAL PHE ASP ASN LYS PHE HIS ILE SEQRES 16 A 228 ILE GLY ALA VAL GLY ILE GLY ILE ALA VAL VAL MET ILE SEQRES 17 A 228 PHE GLY MET ILE PHE SER MET ILE LEU CYS CYS ALA ILE SEQRES 18 A 228 ARG ARG ASN ARG GLU MET VAL HET PLM A 301 13 HET OLC A 302 16 HET NI A 303 1 HETNAM PLM PALMITIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM NI NICKEL (II) ION HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 PLM C16 H32 O2 FORMUL 3 OLC C21 H40 O4 FORMUL 4 NI NI 2+ FORMUL 5 HOH *13(H2 O) HELIX 1 AA1 LYS A 4 ASP A 38 1 35 HELIX 2 AA2 GLN A 40 GLU A 46 5 7 HELIX 3 AA3 SER A 54 GLN A 83 1 30 HELIX 4 AA4 SER A 85 SER A 112 1 28 HELIX 5 AA5 HIS A 113 THR A 134 1 22 HELIX 6 AA6 ASP A 136 ASN A 151 1 16 HELIX 7 AA7 ALA A 156 ILE A 163 5 8 HELIX 8 AA8 SER A 180 LYS A 192 1 13 HELIX 9 AA9 LYS A 192 ARG A 223 1 32 SSBOND 1 CYS A 152 CYS A 181 1555 1555 2.03 SSBOND 2 CYS A 153 CYS A 167 1555 1555 2.03 LINK OE1 GLU A 174 NI NI A 303 1555 1555 2.01 LINK OE2 GLU A 174 NI NI A 303 1555 1555 2.40 LINK OE1 GLU A 187 NI NI A 303 1555 1555 1.90 LINK OE2 GLU A 187 NI NI A 303 1555 1555 2.16 LINK NE2 HIS A 113 NI NI A 303 1555 8456 2.00 SITE 1 AC1 1 CYS A 219 SITE 1 AC2 3 ARG A 36 TYR A 61 HOH A 402 SITE 1 AC3 3 HIS A 113 GLU A 174 GLU A 187 CRYST1 45.180 125.210 129.400 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022134 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007728 0.00000