HEADER ANTIBIOTIC 28-MAY-19 6K51 TITLE SOLUTION STRUCTURE OF PLECTASIN DERIVATIVE MP1102 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLECTASIN DERIVATIVE MP1102; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: PSEUDOPLECTANIA NIGRELLA; SOURCE 4 ORGANISM_COMMON: PLECTANIA NIGRELLA; SOURCE 5 ORGANISM_TAXID: 96584 KEYWDS PLECTASIN DERIVATIVE, ANTIBACTERIAL ACTIVITY, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.H.WANG,R.Y.MAO,X.H.LIU REVDAT 2 14-JUN-23 6K51 1 REMARK REVDAT 1 12-JUN-19 6K51 0 JRNL AUTH J.H.WANG,R.Y.MAO,X.H.LIU JRNL TITL SOLUTION STRUCTURE OF PLECTASIN DERIVATIVE MP1102 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300010838. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM MP1102, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D NOESY; 2D DQF- REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CCPNMR 2.4, ARIA 2.3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 10 TYR A 25 CZ TYR A 25 CE2 -0.084 REMARK 500 14 TYR A 29 CE1 TYR A 29 CZ -0.084 REMARK 500 14 TYR A 29 CZ TYR A 29 CE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 -46.12 69.78 REMARK 500 1 GLN A 9 -75.76 -105.83 REMARK 500 1 GLU A 10 74.98 58.13 REMARK 500 1 LYS A 23 -92.47 -6.32 REMARK 500 2 ASN A 5 -50.31 71.11 REMARK 500 2 LYS A 23 -100.09 7.87 REMARK 500 3 LYS A 23 -95.73 -1.31 REMARK 500 4 LYS A 23 -96.65 5.16 REMARK 500 4 PHE A 35 -63.69 -94.47 REMARK 500 5 CYS A 4 -70.47 -138.61 REMARK 500 5 GLU A 10 102.88 -36.67 REMARK 500 5 ASP A 12 -74.75 66.34 REMARK 500 5 LYS A 23 -95.63 -4.76 REMARK 500 6 ASN A 5 32.35 -88.71 REMARK 500 6 GLU A 10 88.75 40.65 REMARK 500 6 LYS A 23 -93.30 -8.58 REMARK 500 7 CYS A 4 95.23 -67.31 REMARK 500 7 ASN A 5 53.18 -96.28 REMARK 500 7 GLN A 9 -63.45 -99.29 REMARK 500 7 LYS A 23 -96.02 -3.76 REMARK 500 7 LYS A 32 56.96 -104.25 REMARK 500 7 PHE A 35 -80.05 -122.48 REMARK 500 8 GLN A 9 -57.86 -121.47 REMARK 500 8 LYS A 23 -96.01 13.10 REMARK 500 9 ASN A 5 40.67 -101.48 REMARK 500 9 GLN A 9 -71.57 -86.28 REMARK 500 9 LYS A 23 -99.07 3.57 REMARK 500 9 LYS A 32 51.47 -99.25 REMARK 500 9 PHE A 35 -70.82 -109.81 REMARK 500 10 CYS A 4 -75.68 -69.27 REMARK 500 10 GLN A 9 -72.58 -92.12 REMARK 500 10 LYS A 23 -98.82 7.73 REMARK 500 11 GLU A 10 104.20 -52.83 REMARK 500 11 LYS A 23 -91.04 13.58 REMARK 500 11 PHE A 35 -63.18 -90.39 REMARK 500 12 ASN A 5 -42.54 70.41 REMARK 500 12 ASP A 11 -93.78 -85.76 REMARK 500 12 ASP A 12 -64.06 177.44 REMARK 500 12 LYS A 23 -86.13 -2.29 REMARK 500 13 LYS A 23 -102.32 -1.05 REMARK 500 13 PHE A 35 -72.17 -125.51 REMARK 500 14 GLU A 10 112.24 -37.77 REMARK 500 14 LYS A 23 -93.84 11.85 REMARK 500 14 LYS A 32 50.65 -90.85 REMARK 500 15 LYS A 23 -100.34 13.05 REMARK 500 16 GLN A 9 -61.47 -105.30 REMARK 500 16 LYS A 23 -92.45 12.75 REMARK 500 16 LYS A 32 50.15 -105.76 REMARK 500 17 ASN A 5 -39.31 65.00 REMARK 500 17 GLU A 10 97.52 -46.87 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36257 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF PLECTASIN DERIVATIVE MP1102 DBREF 6K51 A 1 40 PDB 6K51 6K51 1 40 SEQRES 1 A 40 GLY PHE GLY CYS ASN GLY PRO TRP GLN GLU ASP ASP LEU SEQRES 2 A 40 LYS CYS HIS ASN HIS CYS LYS SER ILE LYS GLY TYR LYS SEQRES 3 A 40 GLY GLY TYR CYS ALA LYS GLY GLY PHE VAL CYS LYS CYS SEQRES 4 A 40 TYR HELIX 1 AA1 ASP A 11 SER A 21 1 11 SHEET 1 AA1 2 GLY A 28 CYS A 30 0 SHEET 2 AA1 2 CYS A 37 CYS A 39 -1 O LYS A 38 N TYR A 29 SSBOND 1 CYS A 4 CYS A 30 1555 1555 2.03 SSBOND 2 CYS A 15 CYS A 37 1555 1555 2.03 SSBOND 3 CYS A 19 CYS A 39 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1