HEADER HYDROLASE 28-MAY-19 6K52 TITLE HYPERTHERMOPHILIC GH6 CELLOBIOHYDROLASE (HMCEL6A) FROM THE MICROBIAL TITLE 2 FLORA OF A JAPANESE HOT SPRING COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH6 CELLOBIOHYDROLASE, HMCEL6A; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.91; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS GLYCOSIDE HYDROLASE, GH6, THERMOSTABLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BABA,M.TAKEDA,J.OKUMA,Y.HIROSE,A.NISHIMURA,M.TAKATA,K.ODA, AUTHOR 2 D.SHIBATA,Y.KONDO,T.KUMASAKA REVDAT 2 22-NOV-23 6K52 1 LINK REVDAT 1 03-JUN-20 6K52 0 JRNL AUTH M.TAKEDA,S.BABA,J.OKUMA,Y.HIROSE,A.NISHIMURA,M.TAKATA,K.ODA, JRNL AUTH 2 D.SHIBATA,Y.KONDO,T.KUMASAKA JRNL TITL A HYPERTHERMOPHILIC CELLOBIOHYDROLASE MINED FROM A HOT JRNL TITL 2 SPRING METAGENOMIC DATA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.335 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 95954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.044 REMARK 3 FREE R VALUE TEST SET COUNT : 4840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9167 - 5.2135 0.99 3231 156 0.1586 0.1822 REMARK 3 2 5.2135 - 4.1407 1.00 3099 185 0.1304 0.1475 REMARK 3 3 4.1407 - 3.6180 1.00 3119 154 0.1363 0.1340 REMARK 3 4 3.6180 - 3.2875 1.00 3109 169 0.1478 0.1460 REMARK 3 5 3.2875 - 3.0521 0.99 3104 139 0.1719 0.1965 REMARK 3 6 3.0521 - 2.8723 0.98 3021 161 0.1798 0.2104 REMARK 3 7 2.8723 - 2.7285 0.98 3025 155 0.1789 0.1870 REMARK 3 8 2.7285 - 2.6098 0.98 2980 184 0.1790 0.2235 REMARK 3 9 2.6098 - 2.5093 0.98 3001 162 0.1776 0.2003 REMARK 3 10 2.5093 - 2.4228 0.98 2971 182 0.1705 0.2186 REMARK 3 11 2.4228 - 2.3470 0.97 2978 169 0.1782 0.1892 REMARK 3 12 2.3470 - 2.2800 0.99 3039 145 0.1780 0.1794 REMARK 3 13 2.2800 - 2.2200 0.98 3014 166 0.1830 0.2142 REMARK 3 14 2.2200 - 2.1658 0.99 3021 152 0.1836 0.2132 REMARK 3 15 2.1658 - 2.1166 0.99 3070 156 0.1822 0.2117 REMARK 3 16 2.1166 - 2.0715 1.00 3030 151 0.1853 0.2033 REMARK 3 17 2.0715 - 2.0301 1.00 3063 173 0.1837 0.2173 REMARK 3 18 2.0301 - 1.9918 1.00 3038 166 0.1941 0.2366 REMARK 3 19 1.9918 - 1.9562 0.99 3023 173 0.1979 0.2282 REMARK 3 20 1.9562 - 1.9231 0.98 3053 149 0.2084 0.2277 REMARK 3 21 1.9231 - 1.8921 0.98 2986 153 0.2128 0.2292 REMARK 3 22 1.8921 - 1.8630 0.98 3011 157 0.2125 0.2298 REMARK 3 23 1.8630 - 1.8356 0.98 2958 148 0.2339 0.2576 REMARK 3 24 1.8356 - 1.8097 0.99 2994 162 0.2343 0.2771 REMARK 3 25 1.8097 - 1.7853 0.99 3043 174 0.2362 0.2802 REMARK 3 26 1.7853 - 1.7621 0.99 3028 151 0.2324 0.2681 REMARK 3 27 1.7621 - 1.7400 0.99 3054 163 0.2359 0.2933 REMARK 3 28 1.7400 - 1.7191 0.99 3023 159 0.2346 0.2508 REMARK 3 29 1.7191 - 1.6991 1.00 2984 172 0.2427 0.2845 REMARK 3 30 1.6991 - 1.6800 0.99 3044 154 0.2377 0.2655 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.176 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3555 REMARK 3 ANGLE : 1.127 4897 REMARK 3 CHIRALITY : 0.078 520 REMARK 3 PLANARITY : 0.005 670 REMARK 3 DIHEDRAL : 21.083 1340 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012227. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97033 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.30 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1OC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 1000, 0.2M CAICIUM REMARK 280 ACETATE, 0.1M IMIDAZOLE (PH 8.0), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 70.58400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.75169 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 74.40333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 70.58400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 40.75169 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 74.40333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 70.58400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 40.75169 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.40333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 70.58400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 40.75169 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.40333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 70.58400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 40.75169 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 74.40333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 70.58400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 40.75169 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.40333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.50338 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 148.80667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 81.50338 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 148.80667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 81.50338 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 148.80667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 81.50338 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 148.80667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 81.50338 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 148.80667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 81.50338 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 148.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 974 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1180 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1186 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 31.03 -148.99 REMARK 500 GLU A 138 72.61 50.12 REMARK 500 SER A 141 -85.47 -116.29 REMARK 500 ALA A 185 -138.84 57.07 REMARK 500 TRP A 255 -0.58 76.70 REMARK 500 ASP A 374 94.43 -161.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1184 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1186 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1187 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A1188 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1189 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 2 O REMARK 620 2 ASP A 2 OD1 72.2 REMARK 620 3 THR A 280 O 157.3 94.1 REMARK 620 4 HOH A 616 O 90.6 61.0 98.5 REMARK 620 5 HOH A 643 O 92.7 157.3 94.2 138.0 REMARK 620 6 HOH A 709 O 77.7 80.9 82.4 141.9 79.3 REMARK 620 7 HOH A 715 O 64.0 110.8 138.7 68.6 75.5 132.3 REMARK 620 8 HOH A 962 O 125.1 127.4 77.6 69.0 75.1 146.0 61.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 113 O REMARK 620 2 HOH A 650 O 96.3 REMARK 620 3 HOH A 781 O 81.8 63.3 REMARK 620 4 HOH A 810 O 162.7 67.9 84.6 REMARK 620 5 HOH A1002 O 82.7 66.3 124.8 96.4 REMARK 620 6 HOH A1032 O 97.2 140.9 82.6 91.5 151.9 REMARK 620 7 HOH A1049 O 124.1 128.4 143.5 73.0 86.8 69.9 REMARK 620 8 HOH A1049 O 87.4 136.7 158.6 108.8 71.5 80.5 37.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 260 OD2 REMARK 620 2 ASP A 263 OD1 101.7 REMARK 620 3 ASP A 263 OD2 92.8 51.0 REMARK 620 4 HOH A 783 O 85.8 152.0 156.6 REMARK 620 5 HOH A 787 O 168.5 89.7 95.1 83.7 REMARK 620 6 HOH A 805 O 89.0 126.7 76.7 79.9 84.8 REMARK 620 7 HOH A 903 O 93.9 73.2 124.0 79.4 88.5 158.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST MET IS A INITIATING METHIONINE. THIS DNA SEQUENCE HAS BEEN REMARK 999 DEPOSITED TO DDBJ WITH A LOCUS/ACCESSION NUMBER OF LC163905. DBREF 6K52 A 0 427 PDB 6K52 6K52 0 427 SEQRES 1 A 428 MET LEU ASP ASN PRO PHE ILE GLY ALA ILE GLY TYR VAL SEQRES 2 A 428 ASN PRO ASP TRP ALA THR ASN VAL ILE SER GLN ALA ASN SEQRES 3 A 428 GLN THR ALA ASP PRO THR LEU ALA ALA GLN MET ARG LYS SEQRES 4 A 428 VAL ALA THR TYR SER THR ALA VAL TRP LEU ASP ARG ILE SEQRES 5 A 428 ALA ALA ILE THR ALA GLY ARG GLY LEU ARG GLY HIS LEU SEQRES 6 A 428 ASP GLU ALA LEU ARG GLN MET GLN GLN ALA GLY GLN PRO SEQRES 7 A 428 VAL VAL ILE THR LEU VAL ILE TYR ASP LEU PRO ASN ARG SEQRES 8 A 428 ASP CYS SER ALA ALA ALA SER ASN GLY GLU LEU LEU VAL SEQRES 9 A 428 ALA GLN ASN GLY LEU ALA ARG TYR LYS ALA GLU PHE ILE SEQRES 10 A 428 ASP PRO ILE VAL ALA ILE LEU SER ASP PRO ARG TYR ALA SEQRES 11 A 428 GLY LEU ARG ILE VAL THR ILE ILE GLU PRO ASP SER LEU SEQRES 12 A 428 PRO ASN LEU VAL THR ASN LEU SER ILE PRO ALA CYS ALA SEQRES 13 A 428 GLU ALA GLN ASN ALA TYR ILE GLU GLY ILE ARG TYR ALA SEQRES 14 A 428 VAL ASN ARG LEU ARG THR ILE PRO ASN VAL TYR ILE TYR SEQRES 15 A 428 LEU ASP ILE ALA HIS SER GLY TRP LEU GLY TRP ASP ASN SEQRES 16 A 428 ASN PHE ASN GLY ALA VAL ASN LEU TYR THR GLN VAL VAL SEQRES 17 A 428 GLN GLY MET ASP GLN GLY PHE ASN SER ILE ASP GLY PHE SEQRES 18 A 428 ILE THR ASN VAL ALA ASN TYR THR PRO LEU GLU GLU PRO SEQRES 19 A 428 TYR LEU PRO ASP PRO ASN LEU THR ILE ALA GLY GLN PRO SEQRES 20 A 428 VAL ARG SER ALA SER PHE TYR GLU TRP ASN PRO TYR PHE SEQRES 21 A 428 ASP GLU LEU ASP TYR ALA LEU ALA LEU ARG ASN ALA PHE SEQRES 22 A 428 ILE GLY ARG GLY PHE PRO SER THR ILE GLY MET LEU ILE SEQRES 23 A 428 ASP THR SER ARG ASN GLY TRP GLY GLY CYS SER TYR GLY SEQRES 24 A 428 ARG CYS ARG PRO THR GLY PRO SER SER ASP THR SER SER SEQRES 25 A 428 VAL ASN ALA TYR VAL ASP GLY SER ARG VAL ASP ARG ARG SEQRES 26 A 428 TYR HIS ARG GLY ASN TRP CYS ASN GLN ALA GLY GLY ILE SEQRES 27 A 428 GLY GLU ARG PRO GLN ALA ALA PRO ARG SER GLY ILE ASP SEQRES 28 A 428 ALA TYR VAL TRP VAL LYS PRO PRO GLY GLU SER ASP GLY SEQRES 29 A 428 VAL SER GLN PRO GLY ILE VAL ASP PRO ASP ASP PRO ASN SEQRES 30 A 428 LYS LYS PHE ASP PRO MET CYS ASP PRO ASN GLY GLN SER SEQRES 31 A 428 ARG TYR ASN SER ALA TYR PRO THR GLY ALA LEU PRO ASN SEQRES 32 A 428 ALA PRO HIS ALA GLY ARG TRP PHE PRO GLN GLN PHE GLU SEQRES 33 A 428 ILE LEU VAL ARG ASN ALA TYR PRO PRO ILE GLN PRO HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET ACT A 504 8 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 2 CA 3(CA 2+) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *589(H2 O) HELIX 1 AA1 ASN A 13 GLN A 26 1 14 HELIX 2 AA2 ASP A 29 ALA A 40 1 12 HELIX 3 AA3 ARG A 50 THR A 55 5 6 HELIX 4 AA4 ARG A 58 GLY A 75 1 18 HELIX 5 AA5 LEU A 102 GLN A 105 5 4 HELIX 6 AA6 ASN A 106 PHE A 115 1 10 HELIX 7 AA7 PHE A 115 SER A 124 1 10 HELIX 8 AA8 ASP A 125 ALA A 129 5 5 HELIX 9 AA9 SER A 141 ASN A 148 1 8 HELIX 10 AB1 ILE A 151 ARG A 173 1 23 HELIX 11 AB2 HIS A 186 GLY A 191 1 6 HELIX 12 AB3 TRP A 192 GLY A 209 1 18 HELIX 13 AB4 GLN A 212 SER A 216 5 5 HELIX 14 AB5 ARG A 248 ALA A 250 5 3 HELIX 15 AB6 ASP A 260 ARG A 275 1 16 HELIX 16 AB7 SER A 311 ARG A 320 1 10 HELIX 17 AB8 ASP A 380 ASP A 384 5 5 HELIX 18 AB9 PHE A 410 ASN A 420 1 11 SHEET 1 AA1 3 ILE A 9 GLY A 10 0 SHEET 2 AA1 3 VAL A 78 ILE A 84 1 O VAL A 79 N ILE A 9 SHEET 3 AA1 3 VAL A 46 LEU A 48 1 N VAL A 46 O THR A 81 SHEET 1 AA2 8 ILE A 9 GLY A 10 0 SHEET 2 AA2 8 VAL A 78 ILE A 84 1 O VAL A 79 N ILE A 9 SHEET 3 AA2 8 ARG A 132 ILE A 137 1 O VAL A 134 N LEU A 82 SHEET 4 AA2 8 VAL A 178 ASP A 183 1 O TYR A 179 N ILE A 133 SHEET 5 AA2 8 GLY A 219 THR A 222 1 O ILE A 221 N LEU A 182 SHEET 6 AA2 8 GLY A 282 ASP A 286 1 O LEU A 284 N PHE A 220 SHEET 7 AA2 8 ILE A 349 VAL A 353 1 O VAL A 353 N ILE A 285 SHEET 8 AA2 8 GLN A 342 ARG A 346 -1 N ALA A 344 O ASP A 350 SHEET 1 AA3 2 THR A 241 ILE A 242 0 SHEET 2 AA3 2 GLN A 245 PRO A 246 -1 O GLN A 245 N ILE A 242 SHEET 1 AA4 2 CYS A 295 SER A 296 0 SHEET 2 AA4 2 ARG A 299 CYS A 300 -1 O ARG A 299 N SER A 296 SSBOND 1 CYS A 92 CYS A 154 1555 1555 2.05 SSBOND 2 CYS A 295 CYS A 300 1555 1555 2.05 SSBOND 3 CYS A 331 CYS A 383 1555 1555 2.05 LINK O ASP A 2 CA CA A 501 1555 1555 2.25 LINK OD1 ASP A 2 CA CA A 501 1555 1555 2.48 LINK O ALA A 113 CA CA A 503 1555 1555 2.42 LINK OD2 ASP A 260 CA CA A 502 1555 1555 2.40 LINK OD1 ASP A 263 CA CA A 502 1555 1555 2.65 LINK OD2 ASP A 263 CA CA A 502 1555 1555 2.41 LINK O THR A 280 CA CA A 501 1555 1555 2.34 LINK CA CA A 501 O HOH A 616 1555 1555 2.35 LINK CA CA A 501 O HOH A 643 1555 1555 2.39 LINK CA CA A 501 O HOH A 709 1555 1555 2.49 LINK CA CA A 501 O HOH A 715 1555 1555 2.79 LINK CA CA A 501 O HOH A 962 1555 1555 2.47 LINK CA CA A 502 O HOH A 783 1555 1555 2.39 LINK CA CA A 502 O HOH A 787 1555 1555 2.35 LINK CA CA A 502 O HOH A 805 1555 1555 2.46 LINK CA CA A 502 O HOH A 903 1555 1555 2.45 LINK CA CA A 503 O HOH A 650 1555 16454 2.81 LINK CA CA A 503 O HOH A 781 1555 1555 2.45 LINK CA CA A 503 O HOH A 810 1555 16454 2.39 LINK CA CA A 503 O HOH A1002 1555 1555 2.34 LINK CA CA A 503 O HOH A1032 1555 1555 2.51 LINK CA CA A 503 O AHOH A1049 1555 18444 2.43 LINK CA CA A 503 O BHOH A1049 1555 18444 2.64 CISPEP 1 TYR A 422 PRO A 423 0 2.39 SITE 1 AC1 7 ASP A 2 THR A 280 HOH A 616 HOH A 643 SITE 2 AC1 7 HOH A 709 HOH A 715 HOH A 962 SITE 1 AC2 6 ASP A 260 ASP A 263 HOH A 783 HOH A 787 SITE 2 AC2 6 HOH A 805 HOH A 903 SITE 1 AC3 7 ALA A 113 HOH A 650 HOH A 781 HOH A 810 SITE 2 AC3 7 HOH A1002 HOH A1032 HOH A1049 SITE 1 AC4 9 PHE A 5 ALA A 8 GLY A 10 PRO A 341 SITE 2 AC4 9 GLN A 342 ALA A 343 TYR A 352 HOH A 609 SITE 3 AC4 9 HOH A 629 CRYST1 141.168 141.168 223.210 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007084 0.004090 0.000000 0.00000 SCALE2 0.000000 0.008180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004480 0.00000