HEADER HORMONE 28-MAY-19 6K59 TITLE STRUCTURE OF GLARGINE INSULIN IN 20% ACETIC ACID-D4 (PH 1.9) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLARGINE INSULIN CHAIN-A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLARGINE INSULIN CHAIN-B; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS DIABETES, INSULIN, HORMONE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.N.RATHA,R.K.KAR,A.BHUNIA REVDAT 2 06-NOV-24 6K59 1 REMARK REVDAT 1 06-MAY-20 6K59 0 JRNL AUTH B.N.RATHA,R.K.KAR,Z.BEDNARIKOVA,Z.GAZOVA,S.A.KOTLER,S.RAHA, JRNL AUTH 2 S.DE,N.C.MAITI,A.BHUNIA JRNL TITL MOLECULAR DETAILS OF A SALT BRIDGE AND ITS ROLE IN INSULIN JRNL TITL 2 FIBRILLATION BY NMR AND RAMAN SPECTROSCOPIC ANALYSIS. JRNL REF J.PHYS.CHEM.B V. 124 1125 2020 JRNL REFN ISSN 1089-5647 JRNL PMID 31958230 JRNL DOI 10.1021/ACS.JPCB.9B10349 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300011668. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 1.9 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 350 UM UNLABELLED PEPTIDE CHAIN REMARK 210 A, 350 UM UNLABELLED PEPTIDE REMARK 210 CHAIN B, 20% ACETIC ACID/D4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 12.1, TOPSPIN, AMBER REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 19 -31.96 -135.97 REMARK 500 1 HIS B 5 30.76 -93.99 REMARK 500 1 TYR B 26 80.02 43.78 REMARK 500 1 LYS B 29 -157.95 54.57 REMARK 500 2 TYR A 19 -35.04 -137.25 REMARK 500 2 PHE B 25 33.56 -74.75 REMARK 500 2 THR B 27 -9.77 -150.75 REMARK 500 2 LYS B 29 -159.97 54.67 REMARK 500 3 TYR A 19 -30.76 -135.13 REMARK 500 3 ASN B 3 -23.91 59.09 REMARK 500 3 HIS B 5 32.94 -93.88 REMARK 500 3 LYS B 29 -154.01 52.87 REMARK 500 4 TYR A 19 -33.79 -133.59 REMARK 500 4 ASN B 3 -20.02 59.83 REMARK 500 4 HIS B 5 41.87 -83.81 REMARK 500 4 TYR B 26 65.34 39.36 REMARK 500 4 LYS B 29 178.67 57.11 REMARK 500 5 TYR A 19 -32.82 -130.57 REMARK 500 5 ASN B 3 -12.83 59.99 REMARK 500 5 HIS B 5 39.65 -83.94 REMARK 500 5 PHE B 25 42.35 -84.79 REMARK 500 5 THR B 27 -28.76 -141.85 REMARK 500 5 LYS B 29 -159.10 54.39 REMARK 500 6 HIS B 5 42.98 -84.89 REMARK 500 6 PHE B 25 38.86 -92.89 REMARK 500 6 THR B 27 -30.57 -145.52 REMARK 500 6 LYS B 29 -176.61 56.56 REMARK 500 7 PHE B 25 47.86 -84.15 REMARK 500 7 THR B 27 -33.73 -149.88 REMARK 500 7 LYS B 29 127.52 63.68 REMARK 500 8 HIS B 5 33.35 -85.39 REMARK 500 8 TYR B 16 0.02 -65.88 REMARK 500 8 TYR B 26 47.88 38.47 REMARK 500 8 LYS B 29 104.70 60.10 REMARK 500 9 ASN B 3 14.62 58.31 REMARK 500 9 LYS B 29 134.53 64.44 REMARK 500 10 LYS B 29 124.62 64.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 23 PHE B 24 1 -144.83 REMARK 500 GLY B 23 PHE B 24 2 -142.44 REMARK 500 GLY B 23 PHE B 24 3 -145.24 REMARK 500 GLY B 23 PHE B 24 4 -147.64 REMARK 500 GLY B 23 PHE B 24 5 -146.20 REMARK 500 GLY B 23 PHE B 24 6 -147.57 REMARK 500 GLY B 23 PHE B 24 7 -149.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG B 31 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36258 RELATED DB: BMRB REMARK 900 GLARGINE INSULIN DBREF 6K59 A 1 21 PDB 6K59 6K59 1 21 DBREF 6K59 B 1 32 PDB 6K59 6K59 1 32 SEQRES 1 A 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 A 21 TYR GLN LEU GLU ASN TYR CYS GLY SEQRES 1 B 32 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 B 32 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 B 32 THR PRO LYS THR ARG ARG HELIX 1 AA1 GLY A 1 SER A 9 1 9 HELIX 2 AA2 SER A 12 ASN A 18 1 7 HELIX 3 AA3 GLY B 8 CYS B 19 1 12 SSBOND 1 CYS A 6 CYS A 11 1555 1555 2.04 SSBOND 2 CYS A 7 CYS B 7 1555 1555 2.04 SSBOND 3 CYS A 20 CYS B 19 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1