HEADER STRUCTURAL PROTEIN 01-JUN-19 6K67 TITLE APPLICATION OF ANTI-HELIX ANTIBODIES IN PROTEIN STRUCTURE TITLE 2 DETERMINATION (9011-3LRH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3LRH INTROBODY; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ENGINEERED CALMODULIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY, PROTEIN DESIGN, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.O.LEE,M.S.JIN,J.W.KIM,S.KIM,H.LEE,G.Y.CHO REVDAT 4 22-NOV-23 6K67 1 LINK REVDAT 3 18-SEP-19 6K67 1 JRNL REVDAT 2 28-AUG-19 6K67 1 REMARK REVDAT 1 14-AUG-19 6K67 0 JRNL AUTH J.W.KIM,S.KIM,H.LEE,G.CHO,S.C.KIM,H.LEE,M.S.JIN,J.O.LEE JRNL TITL APPLICATION OF ANTIHELIX ANTIBODIES IN PROTEIN STRUCTURE JRNL TITL 2 DETERMINATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 17786 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31371498 JRNL DOI 10.1073/PNAS.1910080116 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 31710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1712 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2287 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : -0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.074 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2954 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2661 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3996 ; 1.505 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6203 ; 1.470 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 5.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;30.326 ;23.973 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;13.363 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 393 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3341 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 589 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1528 ; 3.438 ; 3.618 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1527 ; 3.436 ; 3.614 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1903 ; 4.661 ; 5.404 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1904 ; 4.660 ; 5.408 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1426 ; 4.695 ; 4.102 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1427 ; 4.694 ; 4.107 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2094 ; 6.957 ; 5.946 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3329 ; 8.723 ;43.983 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3270 ; 8.445 ;43.643 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6K67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33481 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LRH, 2W73 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG 400, 0.2M CACL2, 0.1M HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.64900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.28367 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.09167 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 57.64900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 33.28367 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.09167 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 57.64900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 33.28367 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.09167 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.56733 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 62.18333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.56733 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 62.18333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.56733 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 62.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 SER A 111 REMARK 465 ALA A 112 REMARK 465 MET B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 LEU B -3 REMARK 465 VAL B -2 REMARK 465 PRO B -1 REMARK 465 ARG B 0 REMARK 465 LYS B 84 REMARK 465 ASP B 85 REMARK 465 THR B 86 REMARK 465 ASP B 87 REMARK 465 MET C -22 REMARK 465 GLY C -21 REMARK 465 SER C -20 REMARK 465 SER C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 SER C -12 REMARK 465 SER C -11 REMARK 465 GLY C -10 REMARK 465 LEU C -9 REMARK 465 VAL C -8 REMARK 465 PRO C -7 REMARK 465 ARG C -6 REMARK 465 GLY C -5 REMARK 465 SER C -4 REMARK 465 HIS C -3 REMARK 465 MET C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLN C 1 REMARK 465 SER C 111 REMARK 465 ALA C 112 REMARK 465 MET D -16 REMARK 465 GLY D -15 REMARK 465 SER D -14 REMARK 465 SER D -13 REMARK 465 HIS D -12 REMARK 465 HIS D -11 REMARK 465 HIS D -10 REMARK 465 HIS D -9 REMARK 465 HIS D -8 REMARK 465 HIS D -7 REMARK 465 SER D -6 REMARK 465 SER D -5 REMARK 465 GLY D -4 REMARK 465 LEU D -3 REMARK 465 VAL D -2 REMARK 465 PRO D -1 REMARK 465 ARG D 0 REMARK 465 MET D 83 REMARK 465 LYS D 84 REMARK 465 ASP D 85 REMARK 465 THR D 86 REMARK 465 ASP D 87 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 -4.50 71.89 REMARK 500 ASN A 28 -94.77 -107.47 REMARK 500 ASP A 52 -52.55 76.80 REMARK 500 ARG C 15 -4.81 79.32 REMARK 500 ASN C 28 -93.95 -105.21 REMARK 500 ASP C 52 -50.70 75.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 27 OD1 REMARK 620 2 ASP B 31 OD1 80.7 REMARK 620 3 THR B 33 O 84.2 73.5 REMARK 620 4 GLU B 38 OE1 98.0 157.8 128.6 REMARK 620 5 GLU B 38 OE2 115.1 147.1 79.5 53.0 REMARK 620 6 HOH B 208 O 159.0 87.4 109.0 86.5 84.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 63 OD1 REMARK 620 2 ASP B 65 OD1 78.8 REMARK 620 3 ASN B 67 OD1 91.7 73.6 REMARK 620 4 THR B 69 O 88.4 154.3 84.8 REMARK 620 5 GLU B 74 OE1 86.8 77.5 150.8 124.3 REMARK 620 6 GLU B 74 OE2 105.6 125.9 155.7 78.8 49.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 27 OD1 REMARK 620 2 ASP D 29 OD1 78.8 REMARK 620 3 THR D 33 O 80.5 146.4 REMARK 620 4 GLU D 38 OE1 97.3 78.7 130.3 REMARK 620 5 GLU D 38 OE2 106.1 132.2 79.1 53.6 REMARK 620 6 HOH D 221 O 156.6 81.6 110.2 91.2 96.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 63 OD1 REMARK 620 2 ASP D 65 OD1 84.4 REMARK 620 3 ASN D 67 OD1 95.2 75.8 REMARK 620 4 THR D 69 O 75.2 147.6 81.2 REMARK 620 5 GLU D 74 OE1 89.0 85.7 160.5 118.3 REMARK 620 6 GLU D 74 OE2 105.6 136.4 142.2 74.3 53.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 102 DBREF 6K67 A -22 112 PDB 6K67 6K67 -22 112 DBREF 6K67 B -16 87 PDB 6K67 6K67 -16 87 DBREF 6K67 C -22 112 PDB 6K67 6K67 -22 112 DBREF 6K67 D -16 87 PDB 6K67 6K67 -16 87 SEQRES 1 A 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 135 LEU VAL PRO ARG GLY SER HIS MET GLY SER GLN PRO VAL SEQRES 3 A 135 LEU THR GLN SER PRO SER VAL SER ALA ALA PRO ARG GLN SEQRES 4 A 135 ARG VAL THR ILE SER VAL SER GLY SER ASN SER ASN ILE SEQRES 5 A 135 GLY SER ASN THR VAL ASN TRP ILE GLN GLN LEU PRO GLY SEQRES 6 A 135 ARG ALA PRO GLU LEU LEU MET TYR ASP ASP ASP LEU LEU SEQRES 7 A 135 ALA PRO GLY VAL SER ASP ARG PHE SER GLY SER ARG SER SEQRES 8 A 135 GLY THR SER ALA SER LEU THR ILE SER GLY LEU GLN SER SEQRES 9 A 135 GLU ASP GLU ALA ASP TYR TYR ALA ALA THR TRP ASP ASP SEQRES 10 A 135 SER LEU ASN GLY TRP VAL PHE GLY GLY GLY THR LYS VAL SEQRES 11 A 135 THR VAL LEU SER ALA SEQRES 1 B 104 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 104 LEU VAL PRO ARG GLY SER HIS MET GLU LYS LEU MET LYS SEQRES 3 B 104 ALA PHE GLU SER LEU GLN ILE PHE GLN PHE LYS GLU ALA SEQRES 4 B 104 PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR ILE THR SEQRES 5 B 104 THR LYS GLU LEU GLY THR VAL MET ARG SER LEU GLY GLN SEQRES 6 B 104 ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE ASN GLU SEQRES 7 B 104 VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE PRO GLU SEQRES 8 B 104 PHE LEU THR MET MET ALA ARG LYS MET LYS ASP THR ASP SEQRES 1 C 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 135 LEU VAL PRO ARG GLY SER HIS MET GLY SER GLN PRO VAL SEQRES 3 C 135 LEU THR GLN SER PRO SER VAL SER ALA ALA PRO ARG GLN SEQRES 4 C 135 ARG VAL THR ILE SER VAL SER GLY SER ASN SER ASN ILE SEQRES 5 C 135 GLY SER ASN THR VAL ASN TRP ILE GLN GLN LEU PRO GLY SEQRES 6 C 135 ARG ALA PRO GLU LEU LEU MET TYR ASP ASP ASP LEU LEU SEQRES 7 C 135 ALA PRO GLY VAL SER ASP ARG PHE SER GLY SER ARG SER SEQRES 8 C 135 GLY THR SER ALA SER LEU THR ILE SER GLY LEU GLN SER SEQRES 9 C 135 GLU ASP GLU ALA ASP TYR TYR ALA ALA THR TRP ASP ASP SEQRES 10 C 135 SER LEU ASN GLY TRP VAL PHE GLY GLY GLY THR LYS VAL SEQRES 11 C 135 THR VAL LEU SER ALA SEQRES 1 D 104 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 104 LEU VAL PRO ARG GLY SER HIS MET GLU LYS LEU MET LYS SEQRES 3 D 104 ALA PHE GLU SER LEU GLN ILE PHE GLN PHE LYS GLU ALA SEQRES 4 D 104 PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR ILE THR SEQRES 5 D 104 THR LYS GLU LEU GLY THR VAL MET ARG SER LEU GLY GLN SEQRES 6 D 104 ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE ASN GLU SEQRES 7 D 104 VAL ASP ALA ASP GLY ASN GLY THR ILE ASP PHE PRO GLU SEQRES 8 D 104 PHE LEU THR MET MET ALA ARG LYS MET LYS ASP THR ASP HET CA B 101 1 HET CA B 102 1 HET CA D 101 1 HET CA D 102 1 HETNAM CA CALCIUM ION FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *238(H2 O) HELIX 1 AA1 GLN A 80 GLU A 84 5 5 HELIX 2 AA2 SER B 2 ASP B 27 1 26 HELIX 3 AA3 THR B 35 LEU B 46 1 12 HELIX 4 AA4 THR B 51 GLU B 61 1 11 HELIX 5 AA5 ASP B 71 MET B 83 1 13 HELIX 6 AA6 GLN C 80 GLU C 84 5 5 HELIX 7 AA7 SER D 2 ASP D 27 1 26 HELIX 8 AA8 THR D 35 LEU D 46 1 12 HELIX 9 AA9 THR D 51 GLU D 61 1 11 HELIX 10 AB1 ASP D 71 LYS D 82 1 12 SHEET 1 AA1 4 THR A 5 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 SER A 23 -1 O SER A 23 N THR A 5 SHEET 3 AA1 4 SER A 71 ILE A 76 -1 O ILE A 76 N VAL A 18 SHEET 4 AA1 4 PHE A 63 SER A 68 -1 N SER A 64 O THR A 75 SHEET 1 AA2 6 VAL A 10 ALA A 12 0 SHEET 2 AA2 6 THR A 105 VAL A 109 1 O LYS A 106 N VAL A 10 SHEET 3 AA2 6 ALA A 85 ASP A 93 -1 N ALA A 85 O VAL A 107 SHEET 4 AA2 6 ASN A 35 GLN A 39 -1 N ILE A 37 O TYR A 88 SHEET 5 AA2 6 GLU A 46 TYR A 50 -1 O LEU A 48 N TRP A 36 SHEET 6 AA2 6 LEU A 54 LEU A 55 -1 O LEU A 54 N TYR A 50 SHEET 1 AA3 4 VAL A 10 ALA A 12 0 SHEET 2 AA3 4 THR A 105 VAL A 109 1 O LYS A 106 N VAL A 10 SHEET 3 AA3 4 ALA A 85 ASP A 93 -1 N ALA A 85 O VAL A 107 SHEET 4 AA3 4 GLY A 98 PHE A 101 -1 O VAL A 100 N THR A 91 SHEET 1 AA4 4 THR C 5 GLN C 6 0 SHEET 2 AA4 4 VAL C 18 SER C 23 -1 O SER C 23 N THR C 5 SHEET 3 AA4 4 SER C 71 ILE C 76 -1 O LEU C 74 N ILE C 20 SHEET 4 AA4 4 PHE C 63 SER C 68 -1 N SER C 64 O THR C 75 SHEET 1 AA5 6 VAL C 10 ALA C 12 0 SHEET 2 AA5 6 THR C 105 VAL C 109 1 O LYS C 106 N VAL C 10 SHEET 3 AA5 6 ALA C 85 ASP C 93 -1 N ALA C 85 O VAL C 107 SHEET 4 AA5 6 ASN C 35 GLN C 39 -1 N ILE C 37 O TYR C 88 SHEET 5 AA5 6 GLU C 46 TYR C 50 -1 O LEU C 48 N TRP C 36 SHEET 6 AA5 6 LEU C 54 LEU C 55 -1 O LEU C 54 N TYR C 50 SHEET 1 AA6 4 VAL C 10 ALA C 12 0 SHEET 2 AA6 4 THR C 105 VAL C 109 1 O LYS C 106 N VAL C 10 SHEET 3 AA6 4 ALA C 85 ASP C 93 -1 N ALA C 85 O VAL C 107 SHEET 4 AA6 4 GLY C 98 PHE C 101 -1 O VAL C 100 N THR C 91 LINK OD1 ASP B 27 CA CA B 102 1555 1555 2.45 LINK OD1 ASP B 31 CA CA B 102 1555 1555 2.47 LINK O THR B 33 CA CA B 102 1555 1555 2.27 LINK OE1 GLU B 38 CA CA B 102 1555 1555 2.41 LINK OE2 GLU B 38 CA CA B 102 1555 1555 2.44 LINK OD1 ASP B 63 CA CA B 101 1555 1555 2.16 LINK OD1 ASP B 65 CA CA B 101 1555 1555 2.49 LINK OD1 ASN B 67 CA CA B 101 1555 1555 2.32 LINK O THR B 69 CA CA B 101 1555 1555 2.28 LINK OE1 GLU B 74 CA CA B 101 1555 1555 2.63 LINK OE2 GLU B 74 CA CA B 101 1555 1555 2.57 LINK CA CA B 102 O HOH B 208 1555 1555 2.54 LINK OD1 ASP D 27 CA CA D 102 1555 1555 2.33 LINK OD1 ASP D 29 CA CA D 102 1555 1555 2.63 LINK O THR D 33 CA CA D 102 1555 1555 2.18 LINK OE1 GLU D 38 CA CA D 102 1555 1555 2.40 LINK OE2 GLU D 38 CA CA D 102 1555 1555 2.52 LINK OD1 ASP D 63 CA CA D 101 1555 1555 2.36 LINK OD1 ASP D 65 CA CA D 101 1555 1555 2.60 LINK OD1 ASN D 67 CA CA D 101 1555 1555 1.87 LINK O THR D 69 CA CA D 101 1555 1555 2.62 LINK OE1 GLU D 74 CA CA D 101 1555 1555 2.42 LINK OE2 GLU D 74 CA CA D 101 1555 1555 2.49 LINK CA CA D 102 O HOH D 221 1555 1555 2.59 SITE 1 AC1 5 ASP B 63 ASP B 65 ASN B 67 THR B 69 SITE 2 AC1 5 GLU B 74 SITE 1 AC2 6 ASP B 27 ASP B 29 ASP B 31 THR B 33 SITE 2 AC2 6 GLU B 38 HOH B 208 SITE 1 AC3 5 ASP D 63 ASP D 65 ASN D 67 THR D 69 SITE 2 AC3 5 GLU D 74 SITE 1 AC4 6 ASP D 27 ASP D 29 ASP D 31 THR D 33 SITE 2 AC4 6 GLU D 38 HOH D 221 CRYST1 115.298 115.298 93.275 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008673 0.005007 0.000000 0.00000 SCALE2 0.000000 0.010015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010721 0.00000