HEADER HYDROLASE 05-JUN-19 6K6V TITLE CRYSTAL STRUCTURE OF BARLEY EXOHYDROLASEI W434A MUTANT IN COMPLEX WITH TITLE 2 METHYL 6-THIO-BETA-GENTIOBIOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-D-GLUCAN GLUCOHYDROLASE ISOENZYME EXO1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE SUBSP. VULGARE; SOURCE 3 ORGANISM_COMMON: DOMESTICATED BARLEY; SOURCE 4 ORGANISM_TAXID: 112509; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS BARLEY EXOHYDROLASEI, HYDROLASE, ENZYME FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.LUANG,V.A.STRELTSOV,M.HRMOVA REVDAT 3 29-NOV-23 6K6V 1 REMARK REVDAT 2 05-OCT-22 6K6V 1 JRNL REMARK REVDAT 1 19-AUG-20 6K6V 0 JRNL AUTH S.LUANG,X.FERNANDEZ-LUENGO,A.NIN-HILL,V.A.STRELTSOV, JRNL AUTH 2 J.G.SCHWERDT,S.ALONSO-GIL,J.R.KETUDAT CAIRNS,S.PRADEAU, JRNL AUTH 3 S.FORT,J.D.MARECHAL,L.MASGRAU,C.ROVIRA,M.HRMOVA JRNL TITL THE EVOLUTIONARY ADVANTAGE OF AN AROMATIC CLAMP IN PLANT JRNL TITL 2 FAMILY 3 GLYCOSIDE EXO-HYDROLASES. JRNL REF NAT COMMUN V. 13 5577 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36151080 JRNL DOI 10.1038/S41467-022-33180-5 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 62175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 248 REMARK 3 BIN FREE R VALUE : 0.1980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4587 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 704 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -2.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4832 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4638 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6548 ; 1.445 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10649 ; 1.083 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 605 ; 6.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;37.293 ;23.687 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 782 ;13.288 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 745 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5429 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1058 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5333 16.3433 29.6353 REMARK 3 T TENSOR REMARK 3 T11: 0.0265 T22: 0.0622 REMARK 3 T33: 0.0570 T12: 0.0037 REMARK 3 T13: 0.0194 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.4387 L22: 0.0571 REMARK 3 L33: 0.4937 L12: -0.1470 REMARK 3 L13: -0.2055 L23: 0.0944 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: 0.0071 S13: -0.0665 REMARK 3 S21: 0.0346 S22: 0.0178 S23: 0.0366 REMARK 3 S31: 0.0142 S32: 0.0931 S33: 0.0754 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 358 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1238 20.6598 16.1246 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.1309 REMARK 3 T33: 0.0358 T12: -0.0034 REMARK 3 T13: -0.0046 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 1.3811 L22: 1.8064 REMARK 3 L33: 1.6429 L12: -1.3411 REMARK 3 L13: -0.9751 L23: 0.6691 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.2816 S13: -0.1457 REMARK 3 S21: 0.0427 S22: -0.1328 S23: 0.0874 REMARK 3 S31: -0.0402 S32: -0.1262 S33: 0.1355 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5377 31.6413 51.3365 REMARK 3 T TENSOR REMARK 3 T11: 0.0515 T22: 0.0550 REMARK 3 T33: 0.0572 T12: 0.0056 REMARK 3 T13: 0.0000 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3974 L22: 0.1698 REMARK 3 L33: 0.4297 L12: -0.2544 REMARK 3 L13: -0.2916 L23: 0.1851 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: -0.0329 S13: 0.0160 REMARK 3 S21: 0.0268 S22: 0.0102 S23: 0.0015 REMARK 3 S31: 0.0266 S32: 0.0400 S33: 0.0453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6K6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300011082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62175 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 88.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 29.00 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3WLI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AMMONIUM SULFATE, 75 MM HEPES REMARK 280 -NAOH BUFFER, PH 7, CONTAINING 7.5 MM SODIUM ACETATE AND 1.2% (W/ REMARK 280 V) PEG 400, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.03800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.26200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.26200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.55700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.26200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.26200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.51900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.26200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.26200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.55700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.26200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.26200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.51900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.03800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 603 REMARK 465 LYS A 604 REMARK 465 TYR A 605 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 U1Y B 1 O HOH A 805 1.77 REMARK 500 ND2 ASN A 221 C1 NAG A 701 1.78 REMARK 500 O5 U1Y B 1 O HOH A 807 1.83 REMARK 500 NZ LYS A 374 O HOH A 808 1.95 REMARK 500 ND2 ASN A 600 C1 NAG A 703 2.08 REMARK 500 ND2 ASN A 466 OG1 THR A 508 2.09 REMARK 500 ND2 ASN A 498 C1 NAG A 702 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 440 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -2 -70.36 127.08 REMARK 500 ASP A 1 31.64 -89.47 REMARK 500 HIS A 98 64.29 -154.44 REMARK 500 ASN A 221 -154.26 -93.42 REMARK 500 TYR A 271 -62.83 -92.79 REMARK 500 ASP A 299 77.04 -150.28 REMARK 500 ILE A 432 -50.71 71.21 REMARK 500 GLU A 491 -138.84 50.28 REMARK 500 ARG A 526 164.99 179.56 REMARK 500 TRP A 544 -131.77 54.97 REMARK 500 TYR A 587 105.72 -55.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A -3 HIS A -2 140.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1503 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1504 DISTANCE = 6.62 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 701 REMARK 610 NAG A 702 REMARK 610 NAG A 703 REMARK 999 REMARK 999 SEQUENCE REMARK 999 LYS320 IS CONFIRMED BY DNA SEQUENCING RESULT. HOWEVER, THE ELECTRON REMARK 999 DENSITY MAP IS NOT CLEAR, PROBABLY SIDE CHAIN OF THIS RESIDUE IS REMARK 999 FLEXIBLE. DBREF1 6K6V A 0 605 UNP A0A287SCR5_HORVV DBREF2 6K6V A A0A287SCR5 79 684 SEQADV 6K6V HIS A -3 UNP A0A287SCR EXPRESSION TAG SEQADV 6K6V HIS A -2 UNP A0A287SCR EXPRESSION TAG SEQADV 6K6V ALA A -1 UNP A0A287SCR EXPRESSION TAG SEQADV 6K6V LYS A 320 UNP A0A287SCR ASN 399 CONFLICT SEQADV 6K6V ALA A 434 UNP A0A287SCR TRP 513 ENGINEERED MUTATION SEQRES 1 A 609 HIS HIS ALA ALA ASP TYR VAL LEU TYR LYS ASP ALA THR SEQRES 2 A 609 LYS PRO VAL GLU ASP ARG VAL ALA ASP LEU LEU GLY ARG SEQRES 3 A 609 MET THR LEU ALA GLU LYS ILE GLY GLN MET THR GLN ILE SEQRES 4 A 609 GLU ARG LEU VAL ALA THR PRO ASP VAL LEU ARG ASP ASN SEQRES 5 A 609 PHE ILE GLY SER LEU LEU SER GLY GLY GLY SER VAL PRO SEQRES 6 A 609 ARG LYS GLY ALA THR ALA LYS GLU TRP GLN ASP MET VAL SEQRES 7 A 609 ASP GLY PHE GLN LYS ALA CYS MET SER THR ARG LEU GLY SEQRES 8 A 609 ILE PRO MET ILE TYR GLY ILE ASP ALA VAL HIS GLY GLN SEQRES 9 A 609 ASN ASN VAL TYR GLY ALA THR ILE PHE PRO HIS ASN VAL SEQRES 10 A 609 GLY LEU GLY ALA THR ARG ASP PRO TYR LEU VAL LYS ARG SEQRES 11 A 609 ILE GLY GLU ALA THR ALA LEU GLU VAL ARG ALA THR GLY SEQRES 12 A 609 ILE GLN TYR ALA PHE ALA PRO CYS ILE ALA VAL CYS ARG SEQRES 13 A 609 ASP PRO ARG TRP GLY ARG CYS TYR GLU SER TYR SER GLU SEQRES 14 A 609 ASP ARG ARG ILE VAL GLN SER MET THR GLU LEU ILE PRO SEQRES 15 A 609 GLY LEU GLN GLY ASP VAL PRO LYS ASP PHE THR SER GLY SEQRES 16 A 609 MET PRO PHE VAL ALA GLY LYS ASN LYS VAL ALA ALA CYS SEQRES 17 A 609 ALA LYS HIS PHE VAL GLY ASP GLY GLY THR VAL ASP GLY SEQRES 18 A 609 ILE ASN GLU ASN ASN THR ILE ILE ASN ARG GLU GLY LEU SEQRES 19 A 609 MET ASN ILE HIS MET PRO ALA TYR LYS ASN ALA MET ASP SEQRES 20 A 609 LYS GLY VAL SER THR VAL MET ILE SER TYR SER SER TRP SEQRES 21 A 609 ASN GLY VAL LYS MET HIS ALA ASN GLN ASP LEU VAL THR SEQRES 22 A 609 GLY TYR LEU LYS ASP THR LEU LYS PHE LYS GLY PHE VAL SEQRES 23 A 609 ILE SER ASP TRP GLU GLY ILE ASP ARG ILE THR THR PRO SEQRES 24 A 609 ALA GLY SER ASP TYR SER TYR SER VAL LYS ALA SER ILE SEQRES 25 A 609 LEU ALA GLY LEU ASP MET ILE MET VAL PRO ASN LYS TYR SEQRES 26 A 609 GLN GLN PHE ILE SER ILE LEU THR GLY HIS VAL ASN GLY SEQRES 27 A 609 GLY VAL ILE PRO MET SER ARG ILE ASP ASP ALA VAL THR SEQRES 28 A 609 ARG ILE LEU ARG VAL LYS PHE THR MET GLY LEU PHE GLU SEQRES 29 A 609 ASN PRO TYR ALA ASP PRO ALA MET ALA GLU GLN LEU GLY SEQRES 30 A 609 LYS GLN GLU HIS ARG ASP LEU ALA ARG GLU ALA ALA ARG SEQRES 31 A 609 LYS SER LEU VAL LEU LEU LYS ASN GLY LYS THR SER THR SEQRES 32 A 609 ASP ALA PRO LEU LEU PRO LEU PRO LYS LYS ALA PRO LYS SEQRES 33 A 609 ILE LEU VAL ALA GLY SER HIS ALA ASP ASN LEU GLY TYR SEQRES 34 A 609 GLN CYS GLY GLY TRP THR ILE GLU ALA GLN GLY ASP THR SEQRES 35 A 609 GLY ARG THR THR VAL GLY THR THR ILE LEU GLU ALA VAL SEQRES 36 A 609 LYS ALA ALA VAL ASP PRO SER THR VAL VAL VAL PHE ALA SEQRES 37 A 609 GLU ASN PRO ASP ALA GLU PHE VAL LYS SER GLY GLY PHE SEQRES 38 A 609 SER TYR ALA ILE VAL ALA VAL GLY GLU HIS PRO TYR THR SEQRES 39 A 609 GLU THR LYS GLY ASP ASN LEU ASN LEU THR ILE PRO GLU SEQRES 40 A 609 PRO GLY LEU SER THR VAL GLN ALA VAL CYS GLY GLY VAL SEQRES 41 A 609 ARG CYS ALA THR VAL LEU ILE SER GLY ARG PRO VAL VAL SEQRES 42 A 609 VAL GLN PRO LEU LEU ALA ALA SER ASP ALA LEU VAL ALA SEQRES 43 A 609 ALA TRP LEU PRO GLY SER GLU GLY GLN GLY VAL THR ASP SEQRES 44 A 609 ALA LEU PHE GLY ASP PHE GLY PHE THR GLY ARG LEU PRO SEQRES 45 A 609 ARG THR TRP PHE LYS SER VAL ASP GLN LEU PRO MET ASN SEQRES 46 A 609 VAL GLY ASP ALA HIS TYR ASP PRO LEU PHE ARG LEU GLY SEQRES 47 A 609 TYR GLY LEU THR THR ASN ALA THR LYS LYS TYR MODRES 6K6V NAG A 701 NAG -D MODRES 6K6V NAG A 702 NAG -D MODRES 6K6V NAG A 703 NAG -D HET U1Y B 1 13 HET BGC B 2 11 HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HET GOL A 704 6 HET GOL A 705 6 HET SO4 A 706 5 HET ACT A 707 4 HET ACT A 708 4 HET ACT A 709 4 HET ACT A 710 4 HET ACT A 711 4 HET ACT A 712 4 HET ACT A 713 4 HET ACT A 714 4 HET ACT A 715 4 HETNAM U1Y METHYL 6-THIO-BETA-D-GLUCOPYRANOSIDE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 U1Y C7 H14 O5 S FORMUL 2 BGC C6 H12 O6 FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 SO4 O4 S 2- FORMUL 9 ACT 9(C2 H3 O2 1-) FORMUL 18 HOH *704(H2 O) HELIX 1 AA1 VAL A 3 ASP A 7 5 5 HELIX 2 AA2 PRO A 11 GLY A 21 1 11 HELIX 3 AA3 THR A 24 MET A 32 1 9 HELIX 4 AA4 LEU A 38 ALA A 40 5 3 HELIX 5 AA5 THR A 41 ASN A 48 1 8 HELIX 6 AA6 THR A 66 SER A 83 1 18 HELIX 7 AA7 HIS A 111 ARG A 119 1 9 HELIX 8 AA8 ASP A 120 THR A 138 1 19 HELIX 9 AA9 ARG A 158 SER A 162 5 5 HELIX 10 AB1 ASP A 166 MET A 173 1 8 HELIX 11 AB2 GLU A 175 GLY A 182 1 8 HELIX 12 AB3 GLY A 210 ILE A 218 5 9 HELIX 13 AB4 ASN A 226 HIS A 234 1 9 HELIX 14 AB5 MET A 235 LYS A 244 1 10 HELIX 15 AB6 ASN A 264 THR A 269 1 6 HELIX 16 AB7 ILE A 289 THR A 293 5 5 HELIX 17 AB8 ASP A 299 GLY A 311 1 13 HELIX 18 AB9 LYS A 320 GLY A 334 1 15 HELIX 19 AC1 PRO A 338 MET A 356 1 19 HELIX 20 AC2 ASP A 365 LEU A 372 5 8 HELIX 21 AC3 LYS A 374 LEU A 389 1 16 HELIX 22 AC4 ASN A 422 GLY A 428 1 7 HELIX 23 AC5 THR A 446 VAL A 455 1 10 HELIX 24 AC6 ASP A 468 GLY A 475 1 8 HELIX 25 AC7 THR A 490 ASP A 495 5 6 HELIX 26 AC8 GLY A 505 VAL A 516 1 12 HELIX 27 AC9 VAL A 530 SER A 537 1 8 HELIX 28 AD1 GLY A 550 PHE A 558 1 9 HELIX 29 AD2 SER A 574 LEU A 578 5 5 SHEET 1 AA1 5 TYR A 142 ALA A 143 0 SHEET 2 AA1 5 ILE A 91 ILE A 94 1 N ILE A 94 O TYR A 142 SHEET 3 AA1 5 SER A 52 SER A 55 1 N LEU A 53 O GLY A 93 SHEET 4 AA1 5 THR A 33 GLU A 36 1 N ILE A 35 O SER A 52 SHEET 5 AA1 5 ILE A 315 MET A 316 1 O ILE A 315 N GLN A 34 SHEET 1 AA2 3 CYS A 204 PHE A 208 0 SHEET 2 AA2 3 THR A 248 ILE A 251 1 O MET A 250 N PHE A 208 SHEET 3 AA2 3 PHE A 281 ILE A 283 1 O ILE A 283 N VAL A 249 SHEET 1 AA3 3 ASN A 222 THR A 223 0 SHEET 2 AA3 3 SER A 255 TRP A 256 1 O SER A 255 N THR A 223 SHEET 3 AA3 3 VAL A 259 LYS A 260 -1 O VAL A 259 N TRP A 256 SHEET 1 AA4 6 VAL A 390 ASN A 394 0 SHEET 2 AA4 6 ALA A 539 TRP A 544 -1 O ALA A 542 N VAL A 390 SHEET 3 AA4 6 CYS A 518 ILE A 523 1 N LEU A 522 O VAL A 541 SHEET 4 AA4 6 ALA A 480 GLY A 485 1 N VAL A 482 O VAL A 521 SHEET 5 AA4 6 LYS A 412 ALA A 416 1 N ALA A 416 O ILE A 481 SHEET 6 AA4 6 VAL A 460 ALA A 464 1 O VAL A 462 N VAL A 415 SSBOND 1 CYS A 151 CYS A 159 1555 1555 2.14 SSBOND 2 CYS A 513 CYS A 518 1555 1555 2.00 LINK S6 U1Y B 1 C1 BGC B 2 1555 1555 1.76 CISPEP 1 ALA A 145 PRO A 146 0 6.59 CISPEP 2 LYS A 206 HIS A 207 0 -7.70 CISPEP 3 PHE A 208 VAL A 209 0 -3.00 CISPEP 4 THR A 294 PRO A 295 0 -6.61 CISPEP 5 VAL A 317 PRO A 318 0 -8.69 CISPEP 6 LEU A 404 PRO A 405 0 3.41 CISPEP 7 GLU A 503 PRO A 504 0 -1.28 CISPEP 8 LEU A 578 PRO A 579 0 1.26 CRYST1 100.524 100.524 182.076 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009948 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005492 0.00000