HEADER TRANSFERASE 06-JUN-19 6K76 TITLE GLYCEROL KINASE FORM THERMOCOCCUS KODAKARENSIS, COMPLEX STRUCTURE WITH TITLE 2 SUBSTRATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCEROL KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ATP:GLYCEROL 3-PHOSPHOTRANSFERASE,GLYCEROKINASE,GK; COMPND 5 EC: 2.7.1.30; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS (STRAIN ATCC BAA-918 SOURCE 3 / JCM 12380 / KOD1); SOURCE 4 ORGANISM_TAXID: 69014; SOURCE 5 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 6 GENE: GLPK, TK1396; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCEROL, KINASE, ATP, ARCHAEA, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KOGA,C.ANGKAWIDJAJA,H.MATSUMURA,R.HOKAO REVDAT 2 27-MAR-24 6K76 1 REMARK REVDAT 1 10-JUN-20 6K76 0 JRNL AUTH R.HOKAO,H.MATSUMURA,R.KATSUMI,C.ANGKAWIDJAJA,K.TAKANO, JRNL AUTH 2 S.KANAYA,Y.KOGA JRNL TITL STRUCTURAL ANALYSIS OF HEXAMERIC STRUCTURE OF GLYCEROL JRNL TITL 2 KINASE FROM THERMOCOCCUS KODAKARAEINSIS KOD1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3071: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3648 - 6.0925 1.00 2664 138 0.1621 0.2314 REMARK 3 2 6.0925 - 4.8382 1.00 2683 154 0.1764 0.2438 REMARK 3 3 4.8382 - 4.2273 1.00 2694 121 0.1631 0.2478 REMARK 3 4 4.2273 - 3.8411 1.00 2675 145 0.1866 0.2583 REMARK 3 5 3.8411 - 3.5660 1.00 2640 152 0.2035 0.2887 REMARK 3 6 3.5660 - 3.3558 1.00 2679 146 0.2168 0.2960 REMARK 3 7 3.3558 - 3.1878 1.00 2697 135 0.2297 0.3092 REMARK 3 8 3.1878 - 3.0491 1.00 2640 160 0.2412 0.3107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7894 REMARK 3 ANGLE : 1.267 10701 REMARK 3 CHIRALITY : 0.068 1186 REMARK 3 PLANARITY : 0.006 1358 REMARK 3 DIHEDRAL : 8.799 4680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT ATLAS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22560 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.049 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE, PEG1000, CALCIUM ACETATE, REMARK 280 GLYCEROL, AMP-PCP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 109.43100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.18002 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.08133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 109.43100 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 63.18002 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.08133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 109.43100 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 63.18002 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.08133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 126.36003 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.16267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 126.36003 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.16267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 126.36003 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.16267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 4 REMARK 465 ILE A 68 REMARK 465 LEU A 227 REMARK 465 GLY A 228 REMARK 465 SER A 493 REMARK 465 ALA A 494 REMARK 465 LYS A 495 REMARK 465 SER A 496 REMARK 465 ASN A 497 REMARK 465 GLN B 36 REMARK 465 HIS B 37 REMARK 465 TYR B 38 REMARK 465 PRO B 39 REMARK 465 ARG B 40 REMARK 465 PRO B 41 REMARK 465 GLY B 42 REMARK 465 TRP B 43 REMARK 465 VAL B 491 REMARK 465 ASP B 492 REMARK 465 SER B 493 REMARK 465 ALA B 494 REMARK 465 LYS B 495 REMARK 465 SER B 496 REMARK 465 ASN B 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 423 OE1 GLU B 458 2.07 REMARK 500 NH1 ARG A 16 OE1 GLU A 428 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 380 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 73.31 -110.85 REMARK 500 ARG A 22 -18.61 -37.93 REMARK 500 SER A 24 34.62 75.21 REMARK 500 PHE A 34 149.21 -176.96 REMARK 500 PRO A 70 -80.84 -33.57 REMARK 500 ASN A 71 8.17 -67.29 REMARK 500 GLU A 83 -30.44 52.83 REMARK 500 ASP A 130 148.10 -174.67 REMARK 500 ALA A 131 1.83 -58.18 REMARK 500 LYS A 190 -73.83 -74.86 REMARK 500 ASP A 203 72.72 49.77 REMARK 500 SER A 207 10.10 -60.95 REMARK 500 GLU A 225 -101.99 -55.26 REMARK 500 ASP A 270 -92.71 -12.59 REMARK 500 THR A 282 -168.65 -125.11 REMARK 500 TRP A 285 154.17 179.91 REMARK 500 THR A 302 -87.75 -129.41 REMARK 500 PRO A 339 55.04 -93.08 REMARK 500 LEU A 391 -18.67 -142.20 REMARK 500 ASP A 443 67.30 -32.39 REMARK 500 ASP A 466 136.69 -12.36 REMARK 500 SER B 14 138.39 178.51 REMARK 500 SER B 24 1.68 59.47 REMARK 500 GLU B 83 -59.71 66.34 REMARK 500 THR B 84 121.67 -30.74 REMARK 500 ASP B 89 -167.28 -125.09 REMARK 500 TYR B 96 154.03 178.37 REMARK 500 ASN B 97 161.77 -48.61 REMARK 500 ARG B 104 38.49 -91.02 REMARK 500 ALA B 131 -88.41 -46.69 REMARK 500 TYR B 132 -63.02 32.64 REMARK 500 ASP B 143 -75.71 -61.21 REMARK 500 PRO B 146 106.23 -50.63 REMARK 500 PHE B 165 -73.31 -53.35 REMARK 500 THR B 171 -32.66 -131.91 REMARK 500 ASP B 203 64.99 65.08 REMARK 500 SER B 207 41.67 -65.49 REMARK 500 VAL B 208 -24.30 -157.97 REMARK 500 GLU B 217 128.59 -176.15 REMARK 500 LEU B 226 -67.97 -91.27 REMARK 500 ASP B 270 -120.61 42.22 REMARK 500 TRP B 285 152.57 178.61 REMARK 500 THR B 302 -73.66 -125.73 REMARK 500 SER B 320 -39.25 -38.38 REMARK 500 ALA B 340 41.35 -90.00 REMARK 500 ASN B 406 91.68 -68.85 REMARK 500 VAL B 442 24.63 -147.45 REMARK 500 ASP B 443 29.29 49.50 REMARK 500 GLU B 458 -82.45 -79.79 REMARK 500 ASP B 466 127.84 -4.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 269 ASP A 270 -143.70 REMARK 500 ALA B 131 TYR B 132 147.79 REMARK 500 THR B 261 GLY B 262 149.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 601 DBREF 6K76 A 1 497 UNP O93623 GLPK_THEKO 1 497 DBREF 6K76 B 1 497 UNP O93623 GLPK_THEKO 1 497 SEQRES 1 A 497 MET GLU LYS PHE VAL LEU SER LEU ASP GLU GLY THR THR SEQRES 2 A 497 SER ALA ARG ALA ILE ILE PHE ASP ARG GLU SER ASN ILE SEQRES 3 A 497 HIS GLY ILE GLY GLN TYR GLU PHE PRO GLN HIS TYR PRO SEQRES 4 A 497 ARG PRO GLY TRP VAL GLU HIS ASN PRO GLU GLU ILE TRP SEQRES 5 A 497 ASP ALA GLN LEU ARG ALA ILE LYS ASP ALA ILE GLN SER SEQRES 6 A 497 ALA ARG ILE GLU PRO ASN GLN ILE ALA ALA ILE GLY VAL SEQRES 7 A 497 THR ASN GLN ARG GLU THR THR LEU VAL TRP ASP LYS ASP SEQRES 8 A 497 GLY LYS PRO LEU TYR ASN ALA ILE VAL TRP GLN CYS ARG SEQRES 9 A 497 ARG THR ALA GLU MET VAL GLU GLU ILE LYS ARG GLU TYR SEQRES 10 A 497 GLY THR MET ILE LYS GLU LYS THR GLY LEU VAL PRO ASP SEQRES 11 A 497 ALA TYR PHE SER ALA SER LYS LEU LYS TRP LEU LEU ASP SEQRES 12 A 497 ASN VAL PRO GLY LEU ARG GLU LYS ALA GLU LYS GLY GLU SEQRES 13 A 497 VAL MET PHE GLY THR VAL ASP THR PHE LEU ILE TYR ARG SEQRES 14 A 497 LEU THR GLY GLU HIS VAL THR ASP TYR SER ASN ALA SER SEQRES 15 A 497 ARG THR MET LEU PHE ASN ILE LYS LYS LEU ASP TRP ASP SEQRES 16 A 497 ASP GLU LEU LEU GLU LEU PHE ASP ILE PRO GLU SER VAL SEQRES 17 A 497 LEU PRO GLU VAL ARG GLU SER SER GLU VAL TYR GLY TYR SEQRES 18 A 497 THR LYS LYS GLU LEU LEU GLY ALA GLU ILE PRO VAL SER SEQRES 19 A 497 GLY ASP ALA GLY ASP GLN GLN ALA ALA LEU PHE GLY GLN SEQRES 20 A 497 ALA ALA PHE GLU ALA GLY MET VAL LYS ALA THR TYR GLY SEQRES 21 A 497 THR GLY SER PHE ILE LEU VAL ASN THR ASP LYS MET VAL SEQRES 22 A 497 LEU TYR SER ASP ASN LEU LEU THR THR ILE ALA TRP GLY SEQRES 23 A 497 LEU ASN GLY ARG VAL SER TYR ALA LEU GLU GLY SER ILE SEQRES 24 A 497 PHE VAL THR GLY ALA ALA VAL GLN TRP LEU ARG ASP GLY SEQRES 25 A 497 ILE LYS ILE ILE LYS HIS ALA SER GLU THR GLU GLU LEU SEQRES 26 A 497 ALA THR LYS LEU GLU SER ASN GLU GLY VAL TYR PHE VAL SEQRES 27 A 497 PRO ALA PHE VAL GLY LEU GLY ALA PRO TYR TRP ASP GLN SEQRES 28 A 497 PHE ALA ARG GLY ILE ILE ILE GLY ILE THR ARG GLY THR SEQRES 29 A 497 GLY ARG GLU HIS LEU ALA ARG ALA THR LEU GLU ALA ILE SEQRES 30 A 497 ALA TYR LEU THR ARG ASP VAL VAL ASP GLU MET GLU LYS SEQRES 31 A 497 LEU VAL GLN ILE LYS GLU LEU ARG VAL ASP GLY GLY ALA SEQRES 32 A 497 THR ALA ASN ASP PHE LEU MET GLN PHE GLN ALA ASP ILE SEQRES 33 A 497 LEU ASN ARG LYS VAL ILE ARG PRO VAL VAL LYS GLU THR SEQRES 34 A 497 THR ALA LEU GLY ALA ALA TYR LEU ALA GLY LEU ALA VAL SEQRES 35 A 497 ASP TYR TRP ALA ASP THR ARG GLU ILE ALA GLU LEU TRP SEQRES 36 A 497 LYS ALA GLU ARG ILE PHE GLU PRO LYS MET ASP GLU LYS SEQRES 37 A 497 THR ARG GLU ARG LEU TYR LYS GLY TRP LYS GLU ALA VAL SEQRES 38 A 497 LYS ARG ALA MET GLY TRP ALA LYS VAL VAL ASP SER ALA SEQRES 39 A 497 LYS SER ASN SEQRES 1 B 497 MET GLU LYS PHE VAL LEU SER LEU ASP GLU GLY THR THR SEQRES 2 B 497 SER ALA ARG ALA ILE ILE PHE ASP ARG GLU SER ASN ILE SEQRES 3 B 497 HIS GLY ILE GLY GLN TYR GLU PHE PRO GLN HIS TYR PRO SEQRES 4 B 497 ARG PRO GLY TRP VAL GLU HIS ASN PRO GLU GLU ILE TRP SEQRES 5 B 497 ASP ALA GLN LEU ARG ALA ILE LYS ASP ALA ILE GLN SER SEQRES 6 B 497 ALA ARG ILE GLU PRO ASN GLN ILE ALA ALA ILE GLY VAL SEQRES 7 B 497 THR ASN GLN ARG GLU THR THR LEU VAL TRP ASP LYS ASP SEQRES 8 B 497 GLY LYS PRO LEU TYR ASN ALA ILE VAL TRP GLN CYS ARG SEQRES 9 B 497 ARG THR ALA GLU MET VAL GLU GLU ILE LYS ARG GLU TYR SEQRES 10 B 497 GLY THR MET ILE LYS GLU LYS THR GLY LEU VAL PRO ASP SEQRES 11 B 497 ALA TYR PHE SER ALA SER LYS LEU LYS TRP LEU LEU ASP SEQRES 12 B 497 ASN VAL PRO GLY LEU ARG GLU LYS ALA GLU LYS GLY GLU SEQRES 13 B 497 VAL MET PHE GLY THR VAL ASP THR PHE LEU ILE TYR ARG SEQRES 14 B 497 LEU THR GLY GLU HIS VAL THR ASP TYR SER ASN ALA SER SEQRES 15 B 497 ARG THR MET LEU PHE ASN ILE LYS LYS LEU ASP TRP ASP SEQRES 16 B 497 ASP GLU LEU LEU GLU LEU PHE ASP ILE PRO GLU SER VAL SEQRES 17 B 497 LEU PRO GLU VAL ARG GLU SER SER GLU VAL TYR GLY TYR SEQRES 18 B 497 THR LYS LYS GLU LEU LEU GLY ALA GLU ILE PRO VAL SER SEQRES 19 B 497 GLY ASP ALA GLY ASP GLN GLN ALA ALA LEU PHE GLY GLN SEQRES 20 B 497 ALA ALA PHE GLU ALA GLY MET VAL LYS ALA THR TYR GLY SEQRES 21 B 497 THR GLY SER PHE ILE LEU VAL ASN THR ASP LYS MET VAL SEQRES 22 B 497 LEU TYR SER ASP ASN LEU LEU THR THR ILE ALA TRP GLY SEQRES 23 B 497 LEU ASN GLY ARG VAL SER TYR ALA LEU GLU GLY SER ILE SEQRES 24 B 497 PHE VAL THR GLY ALA ALA VAL GLN TRP LEU ARG ASP GLY SEQRES 25 B 497 ILE LYS ILE ILE LYS HIS ALA SER GLU THR GLU GLU LEU SEQRES 26 B 497 ALA THR LYS LEU GLU SER ASN GLU GLY VAL TYR PHE VAL SEQRES 27 B 497 PRO ALA PHE VAL GLY LEU GLY ALA PRO TYR TRP ASP GLN SEQRES 28 B 497 PHE ALA ARG GLY ILE ILE ILE GLY ILE THR ARG GLY THR SEQRES 29 B 497 GLY ARG GLU HIS LEU ALA ARG ALA THR LEU GLU ALA ILE SEQRES 30 B 497 ALA TYR LEU THR ARG ASP VAL VAL ASP GLU MET GLU LYS SEQRES 31 B 497 LEU VAL GLN ILE LYS GLU LEU ARG VAL ASP GLY GLY ALA SEQRES 32 B 497 THR ALA ASN ASP PHE LEU MET GLN PHE GLN ALA ASP ILE SEQRES 33 B 497 LEU ASN ARG LYS VAL ILE ARG PRO VAL VAL LYS GLU THR SEQRES 34 B 497 THR ALA LEU GLY ALA ALA TYR LEU ALA GLY LEU ALA VAL SEQRES 35 B 497 ASP TYR TRP ALA ASP THR ARG GLU ILE ALA GLU LEU TRP SEQRES 36 B 497 LYS ALA GLU ARG ILE PHE GLU PRO LYS MET ASP GLU LYS SEQRES 37 B 497 THR ARG GLU ARG LEU TYR LYS GLY TRP LYS GLU ALA VAL SEQRES 38 B 497 LYS ARG ALA MET GLY TRP ALA LYS VAL VAL ASP SER ALA SEQRES 39 B 497 LYS SER ASN HET ANP A 601 31 HET ANP B 601 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP 2(C10 H17 N6 O12 P3) HELIX 1 AA1 ASN A 47 ARG A 67 1 21 HELIX 2 AA2 GLU A 69 ILE A 73 5 5 HELIX 3 AA3 THR A 106 GLY A 126 1 21 HELIX 4 AA4 PHE A 133 VAL A 145 1 13 HELIX 5 AA5 GLY A 147 LYS A 154 1 8 HELIX 6 AA6 VAL A 162 GLY A 172 1 11 HELIX 7 AA7 TYR A 178 ARG A 183 1 6 HELIX 8 AA8 ASP A 195 PHE A 202 1 8 HELIX 9 AA9 PRO A 205 LEU A 209 5 5 HELIX 10 AB1 ASP A 239 GLN A 247 1 9 HELIX 11 AB2 THR A 302 GLY A 312 1 11 HELIX 12 AB3 HIS A 318 SER A 320 5 3 HELIX 13 AB4 GLU A 321 LYS A 328 1 8 HELIX 14 AB5 GLY A 365 GLU A 389 1 25 HELIX 15 AB6 GLY A 401 ALA A 405 5 5 HELIX 16 AB7 ASN A 406 ASN A 418 1 13 HELIX 17 AB8 GLU A 428 ALA A 441 1 14 HELIX 18 AB9 ASP A 447 GLU A 453 1 7 HELIX 19 AC1 ASP A 466 MET A 485 1 20 HELIX 20 AC2 ASN B 47 ARG B 67 1 21 HELIX 21 AC3 GLU B 69 ASN B 71 5 3 HELIX 22 AC4 THR B 106 GLY B 126 1 21 HELIX 23 AC5 PHE B 133 ASN B 144 1 12 HELIX 24 AC6 GLY B 147 GLU B 153 1 7 HELIX 25 AC7 THR B 161 LEU B 170 1 10 HELIX 26 AC8 TYR B 178 ARG B 183 1 6 HELIX 27 AC9 ASP B 195 ASP B 203 1 9 HELIX 28 AD1 LYS B 223 GLY B 228 1 6 HELIX 29 AD2 GLY B 238 GLN B 247 1 10 HELIX 30 AD3 THR B 302 GLY B 312 1 11 HELIX 31 AD4 HIS B 318 SER B 320 5 3 HELIX 32 AD5 GLU B 321 LEU B 329 1 9 HELIX 33 AD6 GLY B 365 LYS B 390 1 26 HELIX 34 AD7 GLY B 401 ALA B 405 5 5 HELIX 35 AD8 ASN B 406 ASN B 418 1 13 HELIX 36 AD9 GLU B 428 ALA B 441 1 14 HELIX 37 AE1 ASP B 447 TRP B 455 1 9 HELIX 38 AE2 ASP B 466 MET B 485 1 20 SHEET 1 AA1 6 ASN A 25 GLU A 33 0 SHEET 2 AA1 6 SER A 14 ASP A 21 -1 N ILE A 19 O HIS A 27 SHEET 3 AA1 6 LEU A 6 GLU A 10 -1 N SER A 7 O ILE A 18 SHEET 4 AA1 6 ILE A 76 ASN A 80 1 O THR A 79 N LEU A 8 SHEET 5 AA1 6 PRO A 232 GLY A 238 1 O PRO A 232 N ILE A 76 SHEET 6 AA1 6 SER A 216 TYR A 221 -1 N GLY A 220 O VAL A 233 SHEET 1 AA2 2 GLU A 45 HIS A 46 0 SHEET 2 AA2 2 ALA A 98 ILE A 99 -1 O ALA A 98 N HIS A 46 SHEET 1 AA3 2 THR A 85 ASP A 89 0 SHEET 2 AA3 2 VAL A 157 THR A 161 -1 O MET A 158 N TRP A 88 SHEET 1 AA4 2 VAL A 175 ASP A 177 0 SHEET 2 AA4 2 GLU A 211 ARG A 213 1 O ARG A 213 N THR A 176 SHEET 1 AA5 2 PHE A 187 ASN A 188 0 SHEET 2 AA5 2 ASP A 193 TRP A 194 -1 O ASP A 193 N ASN A 188 SHEET 1 AA6 7 LEU A 280 LEU A 287 0 SHEET 2 AA6 7 ARG A 290 ILE A 299 -1 O ARG A 290 N LEU A 287 SHEET 3 AA6 7 SER A 263 ASP A 270 -1 N THR A 269 O TYR A 293 SHEET 4 AA6 7 VAL A 255 TYR A 259 -1 N THR A 258 O PHE A 264 SHEET 5 AA6 7 GLU A 396 ASP A 400 1 O ARG A 398 N VAL A 255 SHEET 6 AA6 7 LYS A 420 PRO A 424 1 O ILE A 422 N LEU A 397 SHEET 7 AA6 7 ALA A 457 PHE A 461 -1 O PHE A 461 N VAL A 421 SHEET 1 AA7 2 TYR A 336 VAL A 338 0 SHEET 2 AA7 2 ILE A 356 ILE A 358 -1 O ILE A 356 N VAL A 338 SHEET 1 AA8 6 ILE B 26 TYR B 32 0 SHEET 2 AA8 6 ALA B 15 PHE B 20 -1 N ALA B 17 O GLY B 30 SHEET 3 AA8 6 PHE B 4 GLU B 10 -1 N VAL B 5 O PHE B 20 SHEET 4 AA8 6 ILE B 73 ASN B 80 1 O THR B 79 N LEU B 8 SHEET 5 AA8 6 PRO B 232 ASP B 236 1 O PRO B 232 N ILE B 76 SHEET 6 AA8 6 SER B 216 TYR B 221 -1 N TYR B 219 O VAL B 233 SHEET 1 AA9 2 GLU B 45 HIS B 46 0 SHEET 2 AA9 2 ALA B 98 ILE B 99 -1 O ALA B 98 N HIS B 46 SHEET 1 AB1 2 LEU B 86 TRP B 88 0 SHEET 2 AB1 2 MET B 158 GLY B 160 -1 O MET B 158 N TRP B 88 SHEET 1 AB2 2 VAL B 175 ASP B 177 0 SHEET 2 AB2 2 GLU B 211 ARG B 213 1 O ARG B 213 N THR B 176 SHEET 1 AB3 7 LEU B 280 GLY B 286 0 SHEET 2 AB3 7 VAL B 291 ILE B 299 -1 O SER B 292 N ALA B 284 SHEET 3 AB3 7 SER B 263 ASP B 270 -1 N ILE B 265 O GLY B 297 SHEET 4 AB3 7 VAL B 255 TYR B 259 -1 N THR B 258 O PHE B 264 SHEET 5 AB3 7 LEU B 397 ASP B 400 1 O ASP B 400 N TYR B 259 SHEET 6 AB3 7 VAL B 421 PRO B 424 1 O ILE B 422 N LEU B 397 SHEET 7 AB3 7 ALA B 457 PHE B 461 -1 O ARG B 459 N ARG B 423 SHEET 1 AB4 2 TYR B 336 VAL B 338 0 SHEET 2 AB4 2 ILE B 356 ILE B 358 -1 O ILE B 358 N TYR B 336 CISPEP 1 ALA A 346 PRO A 347 0 -2.34 CISPEP 2 ALA B 346 PRO B 347 0 -5.73 SITE 1 AC1 12 GLY A 11 THR A 12 THR A 13 GLY A 260 SITE 2 AC1 12 THR A 261 GLY A 303 ALA A 304 VAL A 306 SITE 3 AC1 12 GLN A 307 GLY A 402 ALA A 403 ASN A 406 SITE 1 AC2 6 THR B 13 THR B 261 GLY B 303 GLN B 307 SITE 2 AC2 6 GLY B 402 ASN B 406 CRYST1 218.862 218.862 66.244 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004569 0.002638 0.000000 0.00000 SCALE2 0.000000 0.005276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015096 0.00000