HEADER TRANSFERASE 14-JUN-19 6K9C TITLE THE APO STRUCTURE OF NRS-1 C TERMINAL REGION (305-718) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIMASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITRATIRUPTOR PHAGE NRS-1; SOURCE 3 ORGANISM_TAXID: 1230469; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PRIMASE, HELICASE, SSDNA-BINDING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,J.GAN REVDAT 3 27-MAR-24 6K9C 1 REMARK REVDAT 2 15-APR-20 6K9C 1 JRNL REVDAT 1 08-APR-20 6K9C 0 JRNL AUTH X.CHEN,S.SU,Y.CHEN,Y.GAO,Y.LI,Z.SHAO,Y.ZHANG,Q.SHAO,H.LIU, JRNL AUTH 2 J.LI,J.MA,J.GAN JRNL TITL STRUCTURAL STUDIES REVEAL A RING-SHAPED ARCHITECTURE OF JRNL TITL 2 DEEP-SEA VENT PHAGE NRS-1 POLYMERASE. JRNL REF NUCLEIC ACIDS RES. V. 48 3343 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32016421 JRNL DOI 10.1093/NAR/GKAA071 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.6 REMARK 3 NUMBER OF REFLECTIONS : 49645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9234 - 6.1688 1.00 3173 165 0.1544 0.1648 REMARK 3 2 6.1688 - 4.9033 1.00 3066 171 0.1601 0.1985 REMARK 3 3 4.9033 - 4.2855 1.00 3057 158 0.1289 0.1800 REMARK 3 4 4.2855 - 3.8946 1.00 3065 139 0.1467 0.2032 REMARK 3 5 3.8946 - 3.6160 1.00 3055 118 0.1592 0.2306 REMARK 3 6 3.6160 - 3.4031 1.00 3021 156 0.1743 0.2355 REMARK 3 7 3.4031 - 3.2329 1.00 3044 171 0.2006 0.2518 REMARK 3 8 3.2329 - 3.0923 1.00 2995 179 0.2092 0.2494 REMARK 3 9 3.0923 - 2.9734 1.00 3002 154 0.2165 0.3061 REMARK 3 10 2.9734 - 2.8708 1.00 3055 136 0.2365 0.2725 REMARK 3 11 2.8708 - 2.7811 0.99 2912 159 0.2532 0.3094 REMARK 3 12 2.7811 - 2.7017 0.99 3008 139 0.2570 0.2934 REMARK 3 13 2.7017 - 2.6306 0.96 2890 149 0.2757 0.3080 REMARK 3 14 2.6306 - 2.5665 0.91 2748 131 0.2833 0.3634 REMARK 3 15 2.5665 - 2.5082 0.77 2273 167 0.2932 0.3546 REMARK 3 16 2.5082 - 2.4548 0.58 1725 94 0.3030 0.3366 REMARK 3 17 2.4548 - 2.4057 0.37 1123 47 0.3575 0.3854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6865 REMARK 3 ANGLE : 0.846 9306 REMARK 3 CHIRALITY : 0.055 1058 REMARK 3 PLANARITY : 0.007 1161 REMARK 3 DIHEDRAL : 20.011 4138 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 303:391) REMARK 3 ORIGIN FOR THE GROUP (A): 132.0002 51.6534 98.2223 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2274 REMARK 3 T33: 0.2444 T12: 0.0050 REMARK 3 T13: 0.0476 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 0.6767 L22: 3.7125 REMARK 3 L33: 1.4839 L12: -0.1631 REMARK 3 L13: -0.4229 L23: 0.9256 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.1975 S13: 0.0128 REMARK 3 S21: -0.0439 S22: 0.0143 S23: -0.0972 REMARK 3 S31: -0.0699 S32: 0.1033 S33: 0.0023 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 392:617) REMARK 3 ORIGIN FOR THE GROUP (A): 109.4419 73.5009 109.0548 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.2121 REMARK 3 T33: 0.1487 T12: -0.0417 REMARK 3 T13: 0.0228 T23: 0.0929 REMARK 3 L TENSOR REMARK 3 L11: 1.9331 L22: 1.2659 REMARK 3 L33: 1.6130 L12: -0.1531 REMARK 3 L13: -0.7351 L23: -0.3186 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.1232 S13: -0.1065 REMARK 3 S21: 0.0635 S22: 0.0816 S23: 0.1071 REMARK 3 S31: 0.0735 S32: -0.1551 S33: -0.1151 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 618:718) REMARK 3 ORIGIN FOR THE GROUP (A): 104.4875 93.6057 147.7708 REMARK 3 T TENSOR REMARK 3 T11: 0.2474 T22: 0.1384 REMARK 3 T33: 0.1834 T12: -0.0187 REMARK 3 T13: -0.0523 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.1218 L22: 2.4016 REMARK 3 L33: 3.1634 L12: 0.2816 REMARK 3 L13: 0.0555 L23: 0.0560 REMARK 3 S TENSOR REMARK 3 S11: -0.1140 S12: 0.0394 S13: 0.5974 REMARK 3 S21: -0.0081 S22: 0.0276 S23: -0.1237 REMARK 3 S31: -0.4764 S32: 0.0354 S33: 0.0589 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 305:391) REMARK 3 ORIGIN FOR THE GROUP (A): 146.7537 48.6005 117.2983 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.2999 REMARK 3 T33: 0.4782 T12: 0.0503 REMARK 3 T13: -0.0658 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 1.5782 L22: 2.9336 REMARK 3 L33: 3.1921 L12: 0.8557 REMARK 3 L13: -0.7261 L23: 2.2384 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: 0.0998 S13: 0.3435 REMARK 3 S21: 0.1048 S22: 0.1651 S23: -0.6081 REMARK 3 S31: -0.0700 S32: 0.4015 S33: -0.1999 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 392:617) REMARK 3 ORIGIN FOR THE GROUP (A): 132.7479 74.5830 132.3453 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.2924 REMARK 3 T33: 0.2117 T12: 0.0198 REMARK 3 T13: -0.0257 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 1.8607 L22: 2.1206 REMARK 3 L33: 1.6701 L12: 0.1052 REMARK 3 L13: -0.0671 L23: 0.5738 REMARK 3 S TENSOR REMARK 3 S11: 0.1499 S12: 0.0403 S13: -0.0724 REMARK 3 S21: -0.1988 S22: -0.0495 S23: -0.1590 REMARK 3 S31: -0.2046 S32: -0.0497 S33: -0.1113 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 618:718) REMARK 3 ORIGIN FOR THE GROUP (A): 109.7478 77.3167 168.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.2254 REMARK 3 T33: 0.1081 T12: -0.0008 REMARK 3 T13: -0.0715 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 2.1444 L22: 2.7467 REMARK 3 L33: 1.6221 L12: 0.1937 REMARK 3 L13: 0.0037 L23: 0.6633 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.1298 S13: 0.0541 REMARK 3 S21: 0.0481 S22: -0.0108 S23: 0.0486 REMARK 3 S31: -0.0451 S32: 0.0560 S33: 0.0091 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54069 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M NAH2PO4/0.4 M K2HPO4, 0.1 M REMARK 280 PHOSPHATE-CITRATE PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 80.56500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.56500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 80.56500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.56500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 80.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 80.56500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 80.56500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 80.56500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 80.56500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 80.56500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 80.56500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 80.56500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 80.56500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 80.56500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 80.56500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 80.56500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 80.56500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 80.56500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 98740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -503.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 241.69500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 161.13000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 80.56500 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 161.13000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -80.56500 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 241.69500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 303 REMARK 465 GLU B 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 352 CD OE1 OE2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 LYS A 401 CD CE NZ REMARK 470 LYS A 420 CD CE NZ REMARK 470 ARG A 501 CZ NH1 NH2 REMARK 470 GLU A 551 CD OE1 OE2 REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 LYS B 305 CG CD CE NZ REMARK 470 LYS B 312 CG CD CE NZ REMARK 470 ASN B 336 CG OD1 ND2 REMARK 470 ARG B 337 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 359 CD CE NZ REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 LYS B 401 CG CD CE NZ REMARK 470 GLU B 405 CG CD OE1 OE2 REMARK 470 ASN B 543 CG OD1 ND2 REMARK 470 LYS B 567 CD CE NZ REMARK 470 GLU B 575 CG CD OE1 OE2 REMARK 470 LYS B 595 CD CE NZ REMARK 470 GLU B 646 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 307 3.23 -63.21 REMARK 500 ASN A 336 17.35 59.60 REMARK 500 PRO A 375 -179.43 -68.00 REMARK 500 GLU A 381 -123.49 62.64 REMARK 500 LYS A 396 71.00 -104.66 REMARK 500 TYR A 417 18.93 59.43 REMARK 500 GLU A 465 -118.62 55.16 REMARK 500 TYR A 484 -9.78 -58.58 REMARK 500 GLU A 495 150.80 84.98 REMARK 500 ARG A 631 63.19 33.18 REMARK 500 ILE A 693 -58.39 -128.60 REMARK 500 ALA A 708 -123.88 56.20 REMARK 500 PRO B 307 4.02 -62.74 REMARK 500 PRO B 375 -175.38 -68.57 REMARK 500 LYS B 396 70.32 -103.41 REMARK 500 TYR B 417 18.49 59.51 REMARK 500 GLU B 465 -123.78 51.64 REMARK 500 GLU B 495 137.88 79.94 REMARK 500 ARG B 631 61.69 33.52 REMARK 500 ASP B 632 77.90 -102.66 REMARK 500 ILE B 693 -56.49 -128.18 REMARK 500 ALA B 708 -126.42 59.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 801 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 485 O REMARK 620 2 ASN A 534 OD1 175.6 REMARK 620 3 CYS A 536 SG 98.4 80.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 801 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 485 O REMARK 620 2 CYS B 536 SG 96.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 804 DBREF 6K9C A 303 718 UNP M5AAG8 M5AAG8_9CAUD 303 718 DBREF 6K9C B 303 718 UNP M5AAG8 M5AAG8_9CAUD 303 718 SEQRES 1 A 416 GLU GLU LYS ASP PRO LEU TRP LEU TYR LYS VAL LEU LEU SEQRES 2 A 416 THR LYS GLY ILE GLU VAL TRP PHE ASP ILE LYS LEU GLU SEQRES 3 A 416 LYS TYR GLY ILE LYS ARG ASN ASN ARG VAL ASP TYR ILE SEQRES 4 A 416 ALA LYS SER SER LEU GLN GLN ILE VAL PHE GLU ILE ILE SEQRES 5 A 416 GLY LYS THR PRO LYS ASN ILE ALA VAL PRO THR TYR ILE SEQRES 6 A 416 GLY ALA TYR GLU PRO SER LYS PRO GLU LYS TRP GLU GLU SEQRES 7 A 416 GLU GLY ILE LYS TYR ILE ASN LEU PHE LYS PRO THR PRO SEQRES 8 A 416 LEU MET LYS VAL LYS PRO VAL LYS GLU MET PRO GLU ILE SEQRES 9 A 416 VAL LYS ASN LEU LEU LEU ASN LEU PHE ASP TYR ASP ALA SEQRES 10 A 416 LYS SER MET GLY LEU PHE ILE ASN TRP LEU ALA PHE ILE SEQRES 11 A 416 TYR GLN TYR LYS GLU ARG THR GLY VAL ALA TRP ILE PHE SEQRES 12 A 416 MET GLY LYS GLN GLY THR GLY LYS GLY LEU LEU VAL ASP SEQRES 13 A 416 LEU LEU LYS LYS ILE PHE GLU GLU HIS MET SER SER ASN SEQRES 14 A 416 ILE THR ASP ALA ASN LEU ASP SER GLN PHE ASN PRO TYR SEQRES 15 A 416 LEU TYR ASN LYS LEU ILE VAL HIS LEU ASN GLU VAL SER SEQRES 16 A 416 ALA ASP ASN ARG LYS SER ARG MET LEU VAL LYS ASN ARG SEQRES 17 A 416 LEU LYS THR TRP ILE THR ASP GLU THR LEU TYR ILE ASN SEQRES 18 A 416 ARG LYS ASN MET LYS GLU VAL GLU ILE LYS ASN PHE CYS SEQRES 19 A 416 ASN PHE ILE ILE ASN SER ASN GLU THR ILE PRO VAL ASP SEQRES 20 A 416 ILE GLU ASP SER ASP ARG ARG PHE ASN VAL ILE GLU CYS SEQRES 21 A 416 ASN ASN VAL LEU LYS GLU GLN GLU TRP TRP THR THR GLU SEQRES 22 A 416 SER TYR GLN GLU ILE LEU ASN ASN ALA GLU GLY PHE ALA SEQRES 23 A 416 LYS TYR LEU ALA GLY ILE LYS VAL ASP ARG SER LYS VAL SEQRES 24 A 416 ASN GLU VAL VAL MET SER GLU LYS LYS LYS ALA ILE VAL SEQRES 25 A 416 GLU THR THR GLU SER VAL LEU LYS GLN ILE ALA LYS ALA SEQRES 26 A 416 LEU THR ASP ARG ASP ILE GLU TRP PHE LEU ASP ASN GLY SEQRES 27 A 416 LEU GLU GLY VAL VAL GLU LYS ASN ILE VAL ASN ASP PHE SEQRES 28 A 416 GLN TRP GLU GLU LEU GLN GLU ALA ILE THR THR GLY VAL SEQRES 29 A 416 ILE PRO ASN LYS TYR LEU MET ILE ILE VAL GLU GLN ILE SEQRES 30 A 416 LEU GLY ASP SER LYS THR ILE THR TRP ILE LYS ARG ASN SEQRES 31 A 416 ILE ILE THR PRO TYR GLN VAL GLY GLU THR THR VAL VAL SEQRES 32 A 416 LYS MET ALA GLY LYS PRO ILE ARG ALA ILE VAL VAL GLY SEQRES 1 B 416 GLU GLU LYS ASP PRO LEU TRP LEU TYR LYS VAL LEU LEU SEQRES 2 B 416 THR LYS GLY ILE GLU VAL TRP PHE ASP ILE LYS LEU GLU SEQRES 3 B 416 LYS TYR GLY ILE LYS ARG ASN ASN ARG VAL ASP TYR ILE SEQRES 4 B 416 ALA LYS SER SER LEU GLN GLN ILE VAL PHE GLU ILE ILE SEQRES 5 B 416 GLY LYS THR PRO LYS ASN ILE ALA VAL PRO THR TYR ILE SEQRES 6 B 416 GLY ALA TYR GLU PRO SER LYS PRO GLU LYS TRP GLU GLU SEQRES 7 B 416 GLU GLY ILE LYS TYR ILE ASN LEU PHE LYS PRO THR PRO SEQRES 8 B 416 LEU MET LYS VAL LYS PRO VAL LYS GLU MET PRO GLU ILE SEQRES 9 B 416 VAL LYS ASN LEU LEU LEU ASN LEU PHE ASP TYR ASP ALA SEQRES 10 B 416 LYS SER MET GLY LEU PHE ILE ASN TRP LEU ALA PHE ILE SEQRES 11 B 416 TYR GLN TYR LYS GLU ARG THR GLY VAL ALA TRP ILE PHE SEQRES 12 B 416 MET GLY LYS GLN GLY THR GLY LYS GLY LEU LEU VAL ASP SEQRES 13 B 416 LEU LEU LYS LYS ILE PHE GLU GLU HIS MET SER SER ASN SEQRES 14 B 416 ILE THR ASP ALA ASN LEU ASP SER GLN PHE ASN PRO TYR SEQRES 15 B 416 LEU TYR ASN LYS LEU ILE VAL HIS LEU ASN GLU VAL SER SEQRES 16 B 416 ALA ASP ASN ARG LYS SER ARG MET LEU VAL LYS ASN ARG SEQRES 17 B 416 LEU LYS THR TRP ILE THR ASP GLU THR LEU TYR ILE ASN SEQRES 18 B 416 ARG LYS ASN MET LYS GLU VAL GLU ILE LYS ASN PHE CYS SEQRES 19 B 416 ASN PHE ILE ILE ASN SER ASN GLU THR ILE PRO VAL ASP SEQRES 20 B 416 ILE GLU ASP SER ASP ARG ARG PHE ASN VAL ILE GLU CYS SEQRES 21 B 416 ASN ASN VAL LEU LYS GLU GLN GLU TRP TRP THR THR GLU SEQRES 22 B 416 SER TYR GLN GLU ILE LEU ASN ASN ALA GLU GLY PHE ALA SEQRES 23 B 416 LYS TYR LEU ALA GLY ILE LYS VAL ASP ARG SER LYS VAL SEQRES 24 B 416 ASN GLU VAL VAL MET SER GLU LYS LYS LYS ALA ILE VAL SEQRES 25 B 416 GLU THR THR GLU SER VAL LEU LYS GLN ILE ALA LYS ALA SEQRES 26 B 416 LEU THR ASP ARG ASP ILE GLU TRP PHE LEU ASP ASN GLY SEQRES 27 B 416 LEU GLU GLY VAL VAL GLU LYS ASN ILE VAL ASN ASP PHE SEQRES 28 B 416 GLN TRP GLU GLU LEU GLN GLU ALA ILE THR THR GLY VAL SEQRES 29 B 416 ILE PRO ASN LYS TYR LEU MET ILE ILE VAL GLU GLN ILE SEQRES 30 B 416 LEU GLY ASP SER LYS THR ILE THR TRP ILE LYS ARG ASN SEQRES 31 B 416 ILE ILE THR PRO TYR GLN VAL GLY GLU THR THR VAL VAL SEQRES 32 B 416 LYS MET ALA GLY LYS PRO ILE ARG ALA ILE VAL VAL GLY HET HG A 801 1 HET SO4 A 802 5 HET SO4 A 803 5 HET HG B 801 1 HET SO4 B 802 5 HET SO4 B 803 5 HET SO4 B 804 5 HETNAM HG MERCURY (II) ION HETNAM SO4 SULFATE ION FORMUL 3 HG 2(HG 2+) FORMUL 4 SO4 5(O4 S 2-) FORMUL 10 HOH *76(H2 O) HELIX 1 AA1 LEU A 308 LYS A 317 1 10 HELIX 2 AA2 ALA A 342 GLY A 355 1 14 HELIX 3 AA3 THR A 392 LYS A 396 5 5 HELIX 4 AA4 PRO A 404 PHE A 415 1 12 HELIX 5 AA5 ASP A 418 LYS A 436 1 19 HELIX 6 AA6 GLY A 452 GLU A 465 1 14 HELIX 7 AA7 THR A 473 ASP A 478 1 6 HELIX 8 AA8 ASN A 482 TYR A 486 5 5 HELIX 9 AA9 ASN A 500 VAL A 507 1 8 HELIX 10 AB1 VAL A 507 ASP A 517 1 11 HELIX 11 AB2 VAL A 565 GLN A 569 5 5 HELIX 12 AB3 GLU A 575 ASN A 583 1 9 HELIX 13 AB4 ASN A 583 GLY A 593 1 11 HELIX 14 AB5 SER A 607 GLU A 618 1 12 HELIX 15 AB6 SER A 619 ASP A 630 1 12 HELIX 16 AB7 ASP A 632 ASN A 639 1 8 HELIX 17 AB8 GLU A 642 LYS A 647 1 6 HELIX 18 AB9 ASN A 651 GLY A 665 1 15 HELIX 19 AC1 ASN A 669 GLY A 681 1 13 HELIX 20 AC2 THR A 685 ILE A 693 1 9 HELIX 21 AC3 LEU B 308 LYS B 317 1 10 HELIX 22 AC4 ALA B 342 GLY B 355 1 14 HELIX 23 AC5 THR B 392 LYS B 396 5 5 HELIX 24 AC6 PRO B 404 PHE B 415 1 12 HELIX 25 AC7 ASP B 418 LYS B 436 1 19 HELIX 26 AC8 GLY B 452 GLU B 465 1 14 HELIX 27 AC9 THR B 473 ASP B 478 1 6 HELIX 28 AD1 ASN B 482 TYR B 486 5 5 HELIX 29 AD2 ASN B 500 ASP B 517 1 18 HELIX 30 AD3 VAL B 565 GLN B 569 5 5 HELIX 31 AD4 GLU B 575 ASN B 583 1 9 HELIX 32 AD5 ASN B 583 GLY B 593 1 11 HELIX 33 AD6 SER B 607 GLU B 618 1 12 HELIX 34 AD7 SER B 619 ASP B 630 1 12 HELIX 35 AD8 ASP B 632 ASN B 639 1 8 HELIX 36 AD9 GLU B 642 LYS B 647 1 6 HELIX 37 AE1 ASN B 651 GLY B 665 1 15 HELIX 38 AE2 ASN B 669 GLY B 681 1 13 HELIX 39 AE3 THR B 685 ILE B 693 1 9 SHEET 1 AA1 6 ARG A 337 ILE A 341 0 SHEET 2 AA1 6 LYS A 329 ARG A 334 -1 N TYR A 330 O ILE A 341 SHEET 3 AA1 6 GLU A 320 ASP A 324 -1 N ASP A 324 O LYS A 329 SHEET 4 AA1 6 THR A 365 ALA A 369 1 O TYR A 366 N PHE A 323 SHEET 5 AA1 6 ILE A 383 ASN A 387 1 O ILE A 386 N ILE A 367 SHEET 6 AA1 6 LYS A 377 GLU A 380 -1 N TRP A 378 O TYR A 385 SHEET 1 AA2 5 MET A 468 ILE A 472 0 SHEET 2 AA2 5 ILE A 490 ASN A 494 1 O ASN A 494 N ILE A 472 SHEET 3 AA2 5 ASN A 537 SER A 542 1 O ASN A 537 N VAL A 491 SHEET 4 AA2 5 ALA A 442 GLY A 447 1 N PHE A 445 O ILE A 540 SHEET 5 AA2 5 PHE A 557 CYS A 562 1 O ILE A 560 N ILE A 444 SHEET 1 AA3 2 THR A 519 ILE A 522 0 SHEET 2 AA3 2 VAL A 530 LYS A 533 -1 O VAL A 530 N ILE A 522 SHEET 1 AA4 3 VAL A 666 PRO A 668 0 SHEET 2 AA4 3 LYS A 710 VAL A 717 -1 O ILE A 715 N ILE A 667 SHEET 3 AA4 3 GLY A 700 MET A 707 -1 N VAL A 705 O ILE A 712 SHEET 1 AA5 6 ARG B 337 ILE B 341 0 SHEET 2 AA5 6 LYS B 329 ARG B 334 -1 N TYR B 330 O ILE B 341 SHEET 3 AA5 6 GLU B 320 ASP B 324 -1 N ASP B 324 O LYS B 329 SHEET 4 AA5 6 THR B 365 ALA B 369 1 O TYR B 366 N PHE B 323 SHEET 5 AA5 6 ILE B 383 ASN B 387 1 O ILE B 386 N ALA B 369 SHEET 6 AA5 6 LYS B 377 GLU B 380 -1 N TRP B 378 O TYR B 385 SHEET 1 AA6 5 MET B 468 ILE B 472 0 SHEET 2 AA6 5 ILE B 490 ASN B 494 1 O HIS B 492 N SER B 469 SHEET 3 AA6 5 PHE B 538 SER B 542 1 O ASN B 541 N LEU B 493 SHEET 4 AA6 5 ALA B 442 GLY B 447 1 N TRP B 443 O ILE B 540 SHEET 5 AA6 5 PHE B 557 CYS B 562 1 O ILE B 560 N ILE B 444 SHEET 1 AA7 2 THR B 519 ILE B 522 0 SHEET 2 AA7 2 VAL B 530 LYS B 533 -1 O VAL B 530 N ILE B 522 SHEET 1 AA8 3 VAL B 666 PRO B 668 0 SHEET 2 AA8 3 LYS B 710 VAL B 717 -1 O ILE B 715 N ILE B 667 SHEET 3 AA8 3 GLY B 700 MET B 707 -1 N VAL B 705 O ILE B 712 LINK O LEU A 485 HG HG A 801 1555 1555 2.66 LINK OD1 ASN A 534 HG HG A 801 1555 1555 2.80 LINK SG CYS A 536 HG HG A 801 1555 1555 2.44 LINK O LEU B 485 HG HG B 801 1555 1555 2.67 LINK SG CYS B 536 HG HG B 801 1555 1555 2.46 SITE 1 AC1 4 LEU A 485 LEU A 520 ASN A 534 CYS A 536 SITE 1 AC2 5 ALA A 369 TYR A 370 GLU A 371 ILE A 532 SITE 2 AC2 5 LYS A 533 SITE 1 AC3 7 GLN A 449 GLY A 450 THR A 451 GLY A 452 SITE 2 AC3 7 LYS A 453 GLY A 454 ARG B 555 SITE 1 AC4 4 LEU B 485 LEU B 520 ASN B 534 CYS B 536 SITE 1 AC5 6 GLY B 450 THR B 451 GLY B 452 LYS B 453 SITE 2 AC5 6 GLY B 454 SO4 B 803 SITE 1 AC6 3 GLN B 449 LYS B 453 SO4 B 802 SITE 1 AC7 4 LYS A 448 ASP B 552 SER B 553 LYS B 622 CRYST1 161.130 161.130 161.130 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006206 0.00000