HEADER CYTOSOLIC PROTEIN 19-JUN-19 6KA0 TITLE SILVER-BOUND E.COLI MALATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DIMER OR TETRAMER IN SOLUTION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: MDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRHIS-SUMO KEYWDS SILVER NANO-PARTICLE, DEHYDROGENASE, GLYOXYLATE CYCLE, CYTOSOLIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,M.WANG,H.SUN REVDAT 2 22-NOV-23 6KA0 1 LINK REVDAT 1 17-JUN-20 6KA0 0 JRNL AUTH H.WANG,M.WANG,H.SUN JRNL TITL MDH IS A MAJOR SILVER TARGET IN E. COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260:000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 55057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1722 - 5.9204 0.99 2820 131 0.1580 0.1729 REMARK 3 2 5.9204 - 4.7005 0.98 2786 134 0.1820 0.2309 REMARK 3 3 4.7005 - 4.1067 0.96 2675 141 0.1664 0.2128 REMARK 3 4 4.1067 - 3.7314 0.98 2737 156 0.1875 0.2333 REMARK 3 5 3.7314 - 3.4640 0.99 2763 164 0.2135 0.2720 REMARK 3 6 3.4640 - 3.2598 0.99 2770 142 0.2366 0.2921 REMARK 3 7 3.2598 - 3.0966 1.00 2816 131 0.2541 0.3298 REMARK 3 8 3.0966 - 2.9618 1.00 2753 122 0.2593 0.3529 REMARK 3 9 2.9618 - 2.8478 1.00 2807 168 0.2719 0.2940 REMARK 3 10 2.8478 - 2.7495 1.00 2803 142 0.2594 0.3314 REMARK 3 11 2.7495 - 2.6636 1.00 2766 136 0.2703 0.3188 REMARK 3 12 2.6636 - 2.5874 1.00 2787 145 0.2701 0.3561 REMARK 3 13 2.5874 - 2.5193 0.99 2742 151 0.2808 0.3784 REMARK 3 14 2.5193 - 2.4579 0.95 2632 151 0.2753 0.3217 REMARK 3 15 2.4579 - 2.4020 0.97 2745 137 0.2911 0.3241 REMARK 3 16 2.4020 - 2.3509 0.98 2754 144 0.2861 0.3404 REMARK 3 17 2.3509 - 2.3039 0.98 2686 149 0.3039 0.3435 REMARK 3 18 2.3039 - 2.2604 0.98 2761 132 0.3191 0.4065 REMARK 3 19 2.2604 - 2.2200 0.98 2726 152 0.3219 0.3869 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2840 21.0116 14.8528 REMARK 3 T TENSOR REMARK 3 T11: 0.1755 T22: 0.3088 REMARK 3 T33: 0.5722 T12: 0.0064 REMARK 3 T13: 0.0527 T23: 0.0748 REMARK 3 L TENSOR REMARK 3 L11: 0.6081 L22: 0.7759 REMARK 3 L33: 1.2123 L12: 0.0844 REMARK 3 L13: 0.1027 L23: 0.4308 REMARK 3 S TENSOR REMARK 3 S11: 0.2144 S12: 0.0775 S13: -0.0985 REMARK 3 S21: -0.1203 S22: -0.0751 S23: -0.8805 REMARK 3 S31: 0.0362 S32: -0.0749 S33: -0.1660 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5101 19.6067 23.0917 REMARK 3 T TENSOR REMARK 3 T11: 0.1475 T22: 0.2837 REMARK 3 T33: 0.8143 T12: 0.0910 REMARK 3 T13: -0.1680 T23: 0.2099 REMARK 3 L TENSOR REMARK 3 L11: 0.6645 L22: 2.5281 REMARK 3 L33: 1.1079 L12: -1.1243 REMARK 3 L13: 0.1128 L23: 0.6382 REMARK 3 S TENSOR REMARK 3 S11: 0.3291 S12: 0.2018 S13: 0.0885 REMARK 3 S21: -0.0754 S22: 0.0177 S23: -0.5366 REMARK 3 S31: 0.0714 S32: -0.1286 S33: -0.1058 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1422 10.2079 29.2395 REMARK 3 T TENSOR REMARK 3 T11: 0.4895 T22: 0.2667 REMARK 3 T33: 0.9963 T12: 0.0657 REMARK 3 T13: -0.3388 T23: 0.1229 REMARK 3 L TENSOR REMARK 3 L11: 1.1328 L22: 0.2756 REMARK 3 L33: 1.9431 L12: 0.1293 REMARK 3 L13: -0.0072 L23: 0.2601 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: -0.2087 S13: -0.0998 REMARK 3 S21: 0.1855 S22: 0.0191 S23: -0.5861 REMARK 3 S31: 0.5734 S32: 0.0691 S33: -0.0486 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3600 21.5826 37.1431 REMARK 3 T TENSOR REMARK 3 T11: 0.4456 T22: 0.4542 REMARK 3 T33: 0.3825 T12: -0.1770 REMARK 3 T13: -0.1714 T23: 0.1105 REMARK 3 L TENSOR REMARK 3 L11: 1.1468 L22: 1.8551 REMARK 3 L33: 1.0142 L12: -0.0939 REMARK 3 L13: -0.1523 L23: 0.8224 REMARK 3 S TENSOR REMARK 3 S11: 0.3158 S12: -0.2960 S13: -0.0757 REMARK 3 S21: 0.7565 S22: -0.3277 S23: -0.3245 REMARK 3 S31: 0.3909 S32: -0.2902 S33: 0.0206 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2500 60.5412 30.9573 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.3047 REMARK 3 T33: 0.5152 T12: -0.0112 REMARK 3 T13: -0.0158 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.3103 L22: 1.2172 REMARK 3 L33: 1.1893 L12: -0.2603 REMARK 3 L13: -0.0595 L23: 0.3651 REMARK 3 S TENSOR REMARK 3 S11: 0.1662 S12: -0.1611 S13: -0.0076 REMARK 3 S21: 0.0857 S22: -0.1474 S23: -0.7355 REMARK 3 S31: -0.1564 S32: -0.0846 S33: -0.0363 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0543 63.0493 22.2939 REMARK 3 T TENSOR REMARK 3 T11: 0.2885 T22: 0.4246 REMARK 3 T33: 0.7511 T12: -0.0170 REMARK 3 T13: 0.1395 T23: 0.1339 REMARK 3 L TENSOR REMARK 3 L11: 0.6917 L22: 3.3736 REMARK 3 L33: 2.7006 L12: 1.1822 REMARK 3 L13: -0.0946 L23: 1.7167 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: 0.0704 S13: -0.3015 REMARK 3 S21: -0.1072 S22: 0.3121 S23: -0.7201 REMARK 3 S31: -0.2063 S32: 0.3054 S33: -0.1374 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6777 71.6341 16.4032 REMARK 3 T TENSOR REMARK 3 T11: 0.6640 T22: 0.3694 REMARK 3 T33: 0.9418 T12: -0.1029 REMARK 3 T13: 0.4383 T23: 0.3273 REMARK 3 L TENSOR REMARK 3 L11: 1.6774 L22: 1.2246 REMARK 3 L33: 0.9974 L12: 0.1198 REMARK 3 L13: -0.2258 L23: -0.1373 REMARK 3 S TENSOR REMARK 3 S11: -0.0634 S12: 0.1169 S13: -0.0606 REMARK 3 S21: -0.2963 S22: -0.0298 S23: -0.3269 REMARK 3 S31: -0.2839 S32: 0.2759 S33: -0.2467 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8391 59.7728 9.4322 REMARK 3 T TENSOR REMARK 3 T11: 0.7893 T22: 0.4382 REMARK 3 T33: 0.3312 T12: 0.2424 REMARK 3 T13: 0.0579 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.7511 L22: 2.3996 REMARK 3 L33: 1.3255 L12: 0.1187 REMARK 3 L13: -0.0308 L23: 0.8296 REMARK 3 S TENSOR REMARK 3 S11: 0.1995 S12: 0.1849 S13: 0.0624 REMARK 3 S21: -1.2695 S22: -0.3910 S23: -0.1044 REMARK 3 S31: -0.6420 S32: -0.2950 S33: 0.1446 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9748 19.3640 13.9643 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.4752 REMARK 3 T33: 0.2916 T12: 0.0200 REMARK 3 T13: -0.0273 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 0.4235 L22: 0.9127 REMARK 3 L33: 0.7926 L12: -0.0028 REMARK 3 L13: -0.2032 L23: 0.3725 REMARK 3 S TENSOR REMARK 3 S11: 0.2085 S12: -0.1676 S13: -0.0594 REMARK 3 S21: -0.2634 S22: -0.3237 S23: 0.0260 REMARK 3 S31: 0.0081 S32: -0.2407 S33: 0.0892 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 49 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.2627 18.2792 13.4925 REMARK 3 T TENSOR REMARK 3 T11: 0.2912 T22: 0.6709 REMARK 3 T33: 0.4841 T12: 0.0136 REMARK 3 T13: -0.0022 T23: -0.1706 REMARK 3 L TENSOR REMARK 3 L11: 1.2735 L22: 1.1753 REMARK 3 L33: 1.3009 L12: 0.9584 REMARK 3 L13: 1.0472 L23: 0.6413 REMARK 3 S TENSOR REMARK 3 S11: 0.2841 S12: -0.1564 S13: -0.0840 REMARK 3 S21: 0.1341 S22: -0.4570 S23: 0.4222 REMARK 3 S31: 0.1431 S32: -0.7651 S33: 0.0417 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 72 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6842 12.8005 -1.1126 REMARK 3 T TENSOR REMARK 3 T11: 0.4981 T22: 0.4491 REMARK 3 T33: 0.3241 T12: 0.1092 REMARK 3 T13: -0.0907 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 1.6061 L22: 2.9206 REMARK 3 L33: 2.9993 L12: 0.1742 REMARK 3 L13: -0.4329 L23: 1.2445 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: -0.2202 S13: -0.2784 REMARK 3 S21: -0.3184 S22: -0.2905 S23: 0.3752 REMARK 3 S31: 0.4170 S32: -0.2732 S33: 0.2518 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 109 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4589 25.9860 -3.9026 REMARK 3 T TENSOR REMARK 3 T11: 0.6810 T22: 0.3991 REMARK 3 T33: 0.2674 T12: 0.1428 REMARK 3 T13: 0.0456 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.8865 L22: 2.6080 REMARK 3 L33: 0.3790 L12: 0.5424 REMARK 3 L13: -0.0491 L23: 0.3950 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: 0.0395 S13: -0.1194 REMARK 3 S21: -1.4979 S22: -0.2250 S23: -0.1332 REMARK 3 S31: -0.2622 S32: -0.1917 S33: -0.0806 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 179 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9191 34.5689 -9.6178 REMARK 3 T TENSOR REMARK 3 T11: 1.4136 T22: 0.4922 REMARK 3 T33: 0.4019 T12: 0.0053 REMARK 3 T13: 0.5008 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.2743 L22: 1.1291 REMARK 3 L33: 0.6685 L12: -0.1314 REMARK 3 L13: 0.2558 L23: 0.2323 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.2072 S13: 0.1206 REMARK 3 S21: -0.2823 S22: 0.1504 S23: -0.2214 REMARK 3 S31: -0.4724 S32: 0.3035 S33: -0.1654 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 196 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0802 23.8445 -6.4135 REMARK 3 T TENSOR REMARK 3 T11: 0.8155 T22: 0.5509 REMARK 3 T33: 0.6690 T12: 0.0291 REMARK 3 T13: 0.4912 T23: -0.0975 REMARK 3 L TENSOR REMARK 3 L11: 1.6671 L22: 0.4079 REMARK 3 L33: 0.9646 L12: 0.4012 REMARK 3 L13: 0.6014 L23: 0.0549 REMARK 3 S TENSOR REMARK 3 S11: 0.2794 S12: 0.3529 S13: 0.0020 REMARK 3 S21: -0.5966 S22: 0.1239 S23: -0.4523 REMARK 3 S31: -0.3588 S32: 0.3230 S33: 0.9315 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 217 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1329 24.7394 5.2944 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.3670 REMARK 3 T33: 0.3485 T12: 0.1204 REMARK 3 T13: 0.0065 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 2.5344 L22: 1.5118 REMARK 3 L33: 1.8391 L12: -0.4044 REMARK 3 L13: 0.7221 L23: -0.4158 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.0115 S13: -0.2198 REMARK 3 S21: -0.6950 S22: -0.1933 S23: 0.0052 REMARK 3 S31: -0.3147 S32: -0.1141 S33: 0.2448 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 243 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6053 33.8886 -8.6296 REMARK 3 T TENSOR REMARK 3 T11: 1.2976 T22: 0.4949 REMARK 3 T33: 0.3599 T12: 0.1694 REMARK 3 T13: -0.1975 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 0.6578 L22: 1.3012 REMARK 3 L33: 1.1012 L12: 0.0757 REMARK 3 L13: 0.0744 L23: 1.1975 REMARK 3 S TENSOR REMARK 3 S11: -0.3461 S12: -0.0039 S13: 0.3640 REMARK 3 S21: -1.3746 S22: -0.0425 S23: 0.1041 REMARK 3 S31: -0.6965 S32: -0.2821 S33: 0.1181 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 286 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4277 20.7905 -18.1154 REMARK 3 T TENSOR REMARK 3 T11: 1.5826 T22: 0.6311 REMARK 3 T33: 0.4493 T12: 0.1688 REMARK 3 T13: 0.2216 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.8419 L22: 1.2051 REMARK 3 L33: 1.3619 L12: 0.4380 REMARK 3 L13: 0.1002 L23: 0.2670 REMARK 3 S TENSOR REMARK 3 S11: 0.0994 S12: 0.4552 S13: -0.0289 REMARK 3 S21: -0.6217 S22: -0.0888 S23: -0.1269 REMARK 3 S31: -0.1702 S32: 0.1392 S33: -0.0909 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9054 61.6473 33.3408 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: 0.5899 REMARK 3 T33: 0.3515 T12: 0.0474 REMARK 3 T13: 0.0290 T23: -0.1468 REMARK 3 L TENSOR REMARK 3 L11: 0.7631 L22: 1.2604 REMARK 3 L33: 1.1506 L12: 0.1757 REMARK 3 L13: 0.2583 L23: 0.2055 REMARK 3 S TENSOR REMARK 3 S11: 0.1566 S12: 0.1185 S13: -0.1485 REMARK 3 S21: 0.0630 S22: -0.6141 S23: 0.2424 REMARK 3 S31: 0.0031 S32: -0.4396 S33: 0.2196 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 49 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.0839 62.6777 34.4214 REMARK 3 T TENSOR REMARK 3 T11: 0.3386 T22: 0.8062 REMARK 3 T33: 0.5348 T12: -0.0199 REMARK 3 T13: 0.0242 T23: -0.3330 REMARK 3 L TENSOR REMARK 3 L11: 1.0426 L22: 0.7385 REMARK 3 L33: 0.4185 L12: -0.7953 REMARK 3 L13: -0.5365 L23: 0.2656 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: -0.3925 S13: -0.2264 REMARK 3 S21: 0.0914 S22: -0.5841 S23: 0.5494 REMARK 3 S31: 0.0055 S32: -0.5252 S33: 0.1496 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 72 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4984 67.9746 48.7316 REMARK 3 T TENSOR REMARK 3 T11: 0.5477 T22: 0.6283 REMARK 3 T33: 0.4193 T12: -0.1486 REMARK 3 T13: 0.1772 T23: -0.3625 REMARK 3 L TENSOR REMARK 3 L11: 1.1974 L22: 1.1833 REMARK 3 L33: 2.1516 L12: -1.0024 REMARK 3 L13: 1.6072 L23: -1.3531 REMARK 3 S TENSOR REMARK 3 S11: -0.4141 S12: -0.0300 S13: 0.3946 REMARK 3 S21: 0.4271 S22: -0.4892 S23: 0.4325 REMARK 3 S31: -0.4966 S32: -0.4918 S33: -0.5001 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 109 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0254 55.0804 50.7873 REMARK 3 T TENSOR REMARK 3 T11: 0.7506 T22: 0.4603 REMARK 3 T33: 0.2070 T12: -0.2153 REMARK 3 T13: 0.0835 T23: -0.0937 REMARK 3 L TENSOR REMARK 3 L11: 0.7180 L22: 2.8661 REMARK 3 L33: 0.7930 L12: -0.6338 REMARK 3 L13: -0.0519 L23: 0.6323 REMARK 3 S TENSOR REMARK 3 S11: 0.1007 S12: -0.2405 S13: 0.0731 REMARK 3 S21: 1.5930 S22: -0.4056 S23: -0.1984 REMARK 3 S31: 0.5124 S32: -0.3088 S33: -0.1737 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 179 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2158 46.6069 55.4648 REMARK 3 T TENSOR REMARK 3 T11: 1.2346 T22: 0.2382 REMARK 3 T33: 0.4713 T12: -0.0810 REMARK 3 T13: -0.3426 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.6347 L22: 1.0143 REMARK 3 L33: 0.7688 L12: -0.0270 REMARK 3 L13: -0.6760 L23: 0.6412 REMARK 3 S TENSOR REMARK 3 S11: -0.1416 S12: 0.0239 S13: -0.2421 REMARK 3 S21: 0.4053 S22: 0.0448 S23: -0.1110 REMARK 3 S31: 0.1791 S32: -0.0354 S33: -0.2958 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 196 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4587 57.7229 51.7372 REMARK 3 T TENSOR REMARK 3 T11: 0.8859 T22: 0.5247 REMARK 3 T33: 0.6867 T12: -0.1515 REMARK 3 T13: -0.3849 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.5175 L22: 0.9964 REMARK 3 L33: 1.2437 L12: -0.7072 REMARK 3 L13: -0.0754 L23: 0.4645 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.4337 S13: 0.2308 REMARK 3 S21: 0.5451 S22: 0.0279 S23: -0.5982 REMARK 3 S31: 0.0079 S32: 0.2336 S33: 0.0482 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 217 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2639 56.4522 41.5004 REMARK 3 T TENSOR REMARK 3 T11: 0.4198 T22: 0.4932 REMARK 3 T33: 0.2858 T12: -0.1059 REMARK 3 T13: 0.0036 T23: -0.0631 REMARK 3 L TENSOR REMARK 3 L11: 3.3775 L22: 2.6242 REMARK 3 L33: 3.1110 L12: -0.1357 REMARK 3 L13: -0.7269 L23: -0.8735 REMARK 3 S TENSOR REMARK 3 S11: 0.1236 S12: -0.1217 S13: 0.2710 REMARK 3 S21: 0.8154 S22: -0.5238 S23: 0.0691 REMARK 3 S31: -0.0362 S32: -0.3581 S33: 0.3694 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 243 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8486 48.6489 55.2790 REMARK 3 T TENSOR REMARK 3 T11: 1.2527 T22: 0.6207 REMARK 3 T33: 0.2990 T12: -0.3401 REMARK 3 T13: 0.2581 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.8015 L22: 0.5364 REMARK 3 L33: 0.4369 L12: -0.0993 REMARK 3 L13: -0.2506 L23: -0.1313 REMARK 3 S TENSOR REMARK 3 S11: -0.2575 S12: -0.2938 S13: -0.2071 REMARK 3 S21: 0.6058 S22: -0.0547 S23: 0.1092 REMARK 3 S31: 0.2049 S32: -0.0269 S33: -0.2450 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 272 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5003 43.9873 56.7019 REMARK 3 T TENSOR REMARK 3 T11: 1.3313 T22: 0.6453 REMARK 3 T33: 0.6014 T12: -0.2024 REMARK 3 T13: 0.5347 T23: -0.1714 REMARK 3 L TENSOR REMARK 3 L11: 2.6060 L22: 0.9303 REMARK 3 L33: 1.0383 L12: 0.7236 REMARK 3 L13: 1.6378 L23: 0.3715 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: 0.0256 S13: -0.5624 REMARK 3 S21: 0.7836 S22: -0.1693 S23: 0.1225 REMARK 3 S31: 0.7771 S32: -0.4519 S33: -0.1407 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 286 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5290 59.8826 64.7216 REMARK 3 T TENSOR REMARK 3 T11: 1.5875 T22: 0.6426 REMARK 3 T33: 0.3993 T12: 0.0020 REMARK 3 T13: -0.1404 T23: -0.0849 REMARK 3 L TENSOR REMARK 3 L11: 1.1048 L22: 1.1402 REMARK 3 L33: 0.7918 L12: -0.7580 REMARK 3 L13: 0.2654 L23: 0.1982 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.4176 S13: -0.0569 REMARK 3 S21: 0.6714 S22: -0.0222 S23: -0.1113 REMARK 3 S31: 0.6687 S32: -0.0398 S33: 0.0072 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97914 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 2.0 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55114 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 50.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 5KKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 20%, DL-MALIC ACID 0.1M (PH REMARK 280 5.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.41500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 312 REMARK 465 ALA B 80 REMARK 465 ARG B 81 REMARK 465 LYS B 82 REMARK 465 PRO B 83 REMARK 465 GLY B 84 REMARK 465 MET B 85 REMARK 465 ASP B 86 REMARK 465 ARG B 87 REMARK 465 SER B 88 REMARK 465 ASP B 89 REMARK 465 LEU B 90 REMARK 465 LYS B 312 REMARK 465 ALA C 80 REMARK 465 ARG C 81 REMARK 465 LYS C 82 REMARK 465 PRO C 83 REMARK 465 GLY C 84 REMARK 465 MET C 85 REMARK 465 ASP C 86 REMARK 465 ARG C 87 REMARK 465 SER C 88 REMARK 465 ASP C 89 REMARK 465 LEU C 90 REMARK 465 LYS C 312 REMARK 465 ALA D 80 REMARK 465 ARG D 81 REMARK 465 LYS D 82 REMARK 465 PRO D 83 REMARK 465 GLY D 84 REMARK 465 MET D 85 REMARK 465 ASP D 86 REMARK 465 ARG D 87 REMARK 465 SER D 88 REMARK 465 ASP D 89 REMARK 465 LEU D 90 REMARK 465 LYS D 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 MET A 85 CG SD CE REMARK 470 ASP A 86 CG OD1 OD2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 297 CG OD1 OD2 REMARK 470 ASN A 311 CG OD1 ND2 REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 470 ASN B 311 CG OD1 ND2 REMARK 470 PHE C 287 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 311 CG OD1 ND2 REMARK 470 GLU D 196 CG CD OE1 OE2 REMARK 470 LYS D 279 CG CD CE NZ REMARK 470 ASN D 311 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -167.35 -126.42 REMARK 500 LYS A 82 -159.42 -144.77 REMARK 500 PRO A 83 99.90 -29.12 REMARK 500 MET A 85 -144.28 56.75 REMARK 500 ARG A 87 -2.06 153.96 REMARK 500 VAL A 137 18.18 -142.44 REMARK 500 LYS A 217 24.82 -78.39 REMARK 500 PRO B 37 0.67 -67.67 REMARK 500 SER B 59 -152.79 -121.88 REMARK 500 THR B 224 -43.61 -131.40 REMARK 500 SER C 59 -159.16 -131.15 REMARK 500 SER C 222 -169.49 -109.18 REMARK 500 TYR C 260 -64.53 -124.53 REMARK 500 LEU C 292 -77.59 -65.30 REMARK 500 MET C 295 3.60 -153.13 REMARK 500 ALA D 52 43.32 -77.30 REMARK 500 ASP D 139 101.85 -162.11 REMARK 500 GLU D 277 106.37 -165.52 REMARK 500 ARG D 278 95.01 -68.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 401 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 113 SG REMARK 620 2 TRS A 403 N 157.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 401 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 113 SG REMARK 620 2 TRS B 402 N 158.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG C 401 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 113 SG REMARK 620 2 TRS C 402 N 145.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG D 401 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 113 SG REMARK 620 2 TRS D 402 N 160.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS D 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5Z3W RELATED DB: PDB REMARK 900 5Z3W WAS PREPARED FROM SILVER NITRATE DBREF 6KA0 A 1 312 UNP P61889 MDH_ECOLI 1 312 DBREF 6KA0 B 1 312 UNP P61889 MDH_ECOLI 1 312 DBREF 6KA0 C 1 312 UNP P61889 MDH_ECOLI 1 312 DBREF 6KA0 D 1 312 UNP P61889 MDH_ECOLI 1 312 SEQRES 1 A 312 MET LYS VAL ALA VAL LEU GLY ALA ALA GLY GLY ILE GLY SEQRES 2 A 312 GLN ALA LEU ALA LEU LEU LEU LYS THR GLN LEU PRO SER SEQRES 3 A 312 GLY SER GLU LEU SER LEU TYR ASP ILE ALA PRO VAL THR SEQRES 4 A 312 PRO GLY VAL ALA VAL ASP LEU SER HIS ILE PRO THR ALA SEQRES 5 A 312 VAL LYS ILE LYS GLY PHE SER GLY GLU ASP ALA THR PRO SEQRES 6 A 312 ALA LEU GLU GLY ALA ASP VAL VAL LEU ILE SER ALA GLY SEQRES 7 A 312 VAL ALA ARG LYS PRO GLY MET ASP ARG SER ASP LEU PHE SEQRES 8 A 312 ASN VAL ASN ALA GLY ILE VAL LYS ASN LEU VAL GLN GLN SEQRES 9 A 312 VAL ALA LYS THR CYS PRO LYS ALA CYS ILE GLY ILE ILE SEQRES 10 A 312 THR ASN PRO VAL ASN THR THR VAL ALA ILE ALA ALA GLU SEQRES 11 A 312 VAL LEU LYS LYS ALA GLY VAL TYR ASP LYS ASN LYS LEU SEQRES 12 A 312 PHE GLY VAL THR THR LEU ASP ILE ILE ARG SER ASN THR SEQRES 13 A 312 PHE VAL ALA GLU LEU LYS GLY LYS GLN PRO GLY GLU VAL SEQRES 14 A 312 GLU VAL PRO VAL ILE GLY GLY HIS SER GLY VAL THR ILE SEQRES 15 A 312 LEU PRO LEU LEU SER GLN VAL PRO GLY VAL SER PHE THR SEQRES 16 A 312 GLU GLN GLU VAL ALA ASP LEU THR LYS ARG ILE GLN ASN SEQRES 17 A 312 ALA GLY THR GLU VAL VAL GLU ALA LYS ALA GLY GLY GLY SEQRES 18 A 312 SER ALA THR LEU SER MET GLY GLN ALA ALA ALA ARG PHE SEQRES 19 A 312 GLY LEU SER LEU VAL ARG ALA LEU GLN GLY GLU GLN GLY SEQRES 20 A 312 VAL VAL GLU CYS ALA TYR VAL GLU GLY ASP GLY GLN TYR SEQRES 21 A 312 ALA ARG PHE PHE SER GLN PRO LEU LEU LEU GLY LYS ASN SEQRES 22 A 312 GLY VAL GLU GLU ARG LYS SER ILE GLY THR LEU SER ALA SEQRES 23 A 312 PHE GLU GLN ASN ALA LEU GLU GLY MET LEU ASP THR LEU SEQRES 24 A 312 LYS LYS ASP ILE ALA LEU GLY GLU GLU PHE VAL ASN LYS SEQRES 1 B 312 MET LYS VAL ALA VAL LEU GLY ALA ALA GLY GLY ILE GLY SEQRES 2 B 312 GLN ALA LEU ALA LEU LEU LEU LYS THR GLN LEU PRO SER SEQRES 3 B 312 GLY SER GLU LEU SER LEU TYR ASP ILE ALA PRO VAL THR SEQRES 4 B 312 PRO GLY VAL ALA VAL ASP LEU SER HIS ILE PRO THR ALA SEQRES 5 B 312 VAL LYS ILE LYS GLY PHE SER GLY GLU ASP ALA THR PRO SEQRES 6 B 312 ALA LEU GLU GLY ALA ASP VAL VAL LEU ILE SER ALA GLY SEQRES 7 B 312 VAL ALA ARG LYS PRO GLY MET ASP ARG SER ASP LEU PHE SEQRES 8 B 312 ASN VAL ASN ALA GLY ILE VAL LYS ASN LEU VAL GLN GLN SEQRES 9 B 312 VAL ALA LYS THR CYS PRO LYS ALA CYS ILE GLY ILE ILE SEQRES 10 B 312 THR ASN PRO VAL ASN THR THR VAL ALA ILE ALA ALA GLU SEQRES 11 B 312 VAL LEU LYS LYS ALA GLY VAL TYR ASP LYS ASN LYS LEU SEQRES 12 B 312 PHE GLY VAL THR THR LEU ASP ILE ILE ARG SER ASN THR SEQRES 13 B 312 PHE VAL ALA GLU LEU LYS GLY LYS GLN PRO GLY GLU VAL SEQRES 14 B 312 GLU VAL PRO VAL ILE GLY GLY HIS SER GLY VAL THR ILE SEQRES 15 B 312 LEU PRO LEU LEU SER GLN VAL PRO GLY VAL SER PHE THR SEQRES 16 B 312 GLU GLN GLU VAL ALA ASP LEU THR LYS ARG ILE GLN ASN SEQRES 17 B 312 ALA GLY THR GLU VAL VAL GLU ALA LYS ALA GLY GLY GLY SEQRES 18 B 312 SER ALA THR LEU SER MET GLY GLN ALA ALA ALA ARG PHE SEQRES 19 B 312 GLY LEU SER LEU VAL ARG ALA LEU GLN GLY GLU GLN GLY SEQRES 20 B 312 VAL VAL GLU CYS ALA TYR VAL GLU GLY ASP GLY GLN TYR SEQRES 21 B 312 ALA ARG PHE PHE SER GLN PRO LEU LEU LEU GLY LYS ASN SEQRES 22 B 312 GLY VAL GLU GLU ARG LYS SER ILE GLY THR LEU SER ALA SEQRES 23 B 312 PHE GLU GLN ASN ALA LEU GLU GLY MET LEU ASP THR LEU SEQRES 24 B 312 LYS LYS ASP ILE ALA LEU GLY GLU GLU PHE VAL ASN LYS SEQRES 1 C 312 MET LYS VAL ALA VAL LEU GLY ALA ALA GLY GLY ILE GLY SEQRES 2 C 312 GLN ALA LEU ALA LEU LEU LEU LYS THR GLN LEU PRO SER SEQRES 3 C 312 GLY SER GLU LEU SER LEU TYR ASP ILE ALA PRO VAL THR SEQRES 4 C 312 PRO GLY VAL ALA VAL ASP LEU SER HIS ILE PRO THR ALA SEQRES 5 C 312 VAL LYS ILE LYS GLY PHE SER GLY GLU ASP ALA THR PRO SEQRES 6 C 312 ALA LEU GLU GLY ALA ASP VAL VAL LEU ILE SER ALA GLY SEQRES 7 C 312 VAL ALA ARG LYS PRO GLY MET ASP ARG SER ASP LEU PHE SEQRES 8 C 312 ASN VAL ASN ALA GLY ILE VAL LYS ASN LEU VAL GLN GLN SEQRES 9 C 312 VAL ALA LYS THR CYS PRO LYS ALA CYS ILE GLY ILE ILE SEQRES 10 C 312 THR ASN PRO VAL ASN THR THR VAL ALA ILE ALA ALA GLU SEQRES 11 C 312 VAL LEU LYS LYS ALA GLY VAL TYR ASP LYS ASN LYS LEU SEQRES 12 C 312 PHE GLY VAL THR THR LEU ASP ILE ILE ARG SER ASN THR SEQRES 13 C 312 PHE VAL ALA GLU LEU LYS GLY LYS GLN PRO GLY GLU VAL SEQRES 14 C 312 GLU VAL PRO VAL ILE GLY GLY HIS SER GLY VAL THR ILE SEQRES 15 C 312 LEU PRO LEU LEU SER GLN VAL PRO GLY VAL SER PHE THR SEQRES 16 C 312 GLU GLN GLU VAL ALA ASP LEU THR LYS ARG ILE GLN ASN SEQRES 17 C 312 ALA GLY THR GLU VAL VAL GLU ALA LYS ALA GLY GLY GLY SEQRES 18 C 312 SER ALA THR LEU SER MET GLY GLN ALA ALA ALA ARG PHE SEQRES 19 C 312 GLY LEU SER LEU VAL ARG ALA LEU GLN GLY GLU GLN GLY SEQRES 20 C 312 VAL VAL GLU CYS ALA TYR VAL GLU GLY ASP GLY GLN TYR SEQRES 21 C 312 ALA ARG PHE PHE SER GLN PRO LEU LEU LEU GLY LYS ASN SEQRES 22 C 312 GLY VAL GLU GLU ARG LYS SER ILE GLY THR LEU SER ALA SEQRES 23 C 312 PHE GLU GLN ASN ALA LEU GLU GLY MET LEU ASP THR LEU SEQRES 24 C 312 LYS LYS ASP ILE ALA LEU GLY GLU GLU PHE VAL ASN LYS SEQRES 1 D 312 MET LYS VAL ALA VAL LEU GLY ALA ALA GLY GLY ILE GLY SEQRES 2 D 312 GLN ALA LEU ALA LEU LEU LEU LYS THR GLN LEU PRO SER SEQRES 3 D 312 GLY SER GLU LEU SER LEU TYR ASP ILE ALA PRO VAL THR SEQRES 4 D 312 PRO GLY VAL ALA VAL ASP LEU SER HIS ILE PRO THR ALA SEQRES 5 D 312 VAL LYS ILE LYS GLY PHE SER GLY GLU ASP ALA THR PRO SEQRES 6 D 312 ALA LEU GLU GLY ALA ASP VAL VAL LEU ILE SER ALA GLY SEQRES 7 D 312 VAL ALA ARG LYS PRO GLY MET ASP ARG SER ASP LEU PHE SEQRES 8 D 312 ASN VAL ASN ALA GLY ILE VAL LYS ASN LEU VAL GLN GLN SEQRES 9 D 312 VAL ALA LYS THR CYS PRO LYS ALA CYS ILE GLY ILE ILE SEQRES 10 D 312 THR ASN PRO VAL ASN THR THR VAL ALA ILE ALA ALA GLU SEQRES 11 D 312 VAL LEU LYS LYS ALA GLY VAL TYR ASP LYS ASN LYS LEU SEQRES 12 D 312 PHE GLY VAL THR THR LEU ASP ILE ILE ARG SER ASN THR SEQRES 13 D 312 PHE VAL ALA GLU LEU LYS GLY LYS GLN PRO GLY GLU VAL SEQRES 14 D 312 GLU VAL PRO VAL ILE GLY GLY HIS SER GLY VAL THR ILE SEQRES 15 D 312 LEU PRO LEU LEU SER GLN VAL PRO GLY VAL SER PHE THR SEQRES 16 D 312 GLU GLN GLU VAL ALA ASP LEU THR LYS ARG ILE GLN ASN SEQRES 17 D 312 ALA GLY THR GLU VAL VAL GLU ALA LYS ALA GLY GLY GLY SEQRES 18 D 312 SER ALA THR LEU SER MET GLY GLN ALA ALA ALA ARG PHE SEQRES 19 D 312 GLY LEU SER LEU VAL ARG ALA LEU GLN GLY GLU GLN GLY SEQRES 20 D 312 VAL VAL GLU CYS ALA TYR VAL GLU GLY ASP GLY GLN TYR SEQRES 21 D 312 ALA ARG PHE PHE SER GLN PRO LEU LEU LEU GLY LYS ASN SEQRES 22 D 312 GLY VAL GLU GLU ARG LYS SER ILE GLY THR LEU SER ALA SEQRES 23 D 312 PHE GLU GLN ASN ALA LEU GLU GLY MET LEU ASP THR LEU SEQRES 24 D 312 LYS LYS ASP ILE ALA LEU GLY GLU GLU PHE VAL ASN LYS HET AG A 401 1 HET AG A 402 1 HET TRS A 403 8 HET AG B 401 1 HET TRS B 402 8 HET AG C 401 1 HET TRS C 402 8 HET AG D 401 1 HET TRS D 402 8 HETNAM AG SILVER ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 5 AG 5(AG 1+) FORMUL 7 TRS 4(C4 H12 N O3 1+) FORMUL 14 HOH *(H2 O) HELIX 1 AA1 GLY A 10 LEU A 24 1 15 HELIX 2 AA2 VAL A 38 HIS A 48 1 11 HELIX 3 AA3 ALA A 63 GLU A 68 1 6 HELIX 4 AA4 ARG A 87 CYS A 109 1 23 HELIX 5 AA5 PRO A 120 ALA A 135 1 16 HELIX 6 AA6 THR A 147 LYS A 162 1 16 HELIX 7 AA7 GLN A 165 VAL A 169 5 5 HELIX 8 AA8 SER A 178 VAL A 180 5 3 HELIX 9 AA9 LEU A 186 VAL A 189 5 4 HELIX 10 AB1 THR A 195 ASN A 208 1 14 HELIX 11 AB2 ASN A 208 LYS A 217 1 10 HELIX 12 AB3 THR A 224 GLN A 243 1 20 HELIX 13 AB4 SER A 285 GLY A 294 1 10 HELIX 14 AB5 MET A 295 ASN A 311 1 17 HELIX 15 AB6 GLY B 10 LEU B 24 1 15 HELIX 16 AB7 VAL B 38 HIS B 48 1 11 HELIX 17 AB8 ALA B 63 GLU B 68 1 6 HELIX 18 AB9 ASN B 92 CYS B 109 1 18 HELIX 19 AC1 PRO B 120 ALA B 135 1 16 HELIX 20 AC2 ASP B 139 ASN B 141 5 3 HELIX 21 AC3 THR B 147 LYS B 162 1 16 HELIX 22 AC4 GLN B 165 VAL B 169 5 5 HELIX 23 AC5 SER B 178 VAL B 180 5 3 HELIX 24 AC6 LEU B 186 VAL B 189 5 4 HELIX 25 AC7 THR B 195 ASN B 208 1 14 HELIX 26 AC8 ASN B 208 LYS B 217 1 10 HELIX 27 AC9 THR B 224 GLN B 243 1 20 HELIX 28 AD1 SER B 285 GLY B 294 1 10 HELIX 29 AD2 MET B 295 ASN B 311 1 17 HELIX 30 AD3 GLY C 10 LEU C 24 1 15 HELIX 31 AD4 VAL C 38 HIS C 48 1 11 HELIX 32 AD5 ALA C 63 GLU C 68 1 6 HELIX 33 AD6 ASN C 92 CYS C 109 1 18 HELIX 34 AD7 PRO C 120 GLY C 136 1 17 HELIX 35 AD8 THR C 147 LYS C 162 1 16 HELIX 36 AD9 GLN C 165 VAL C 169 5 5 HELIX 37 AE1 SER C 178 VAL C 180 5 3 HELIX 38 AE2 LEU C 186 VAL C 189 5 4 HELIX 39 AE3 THR C 195 LYS C 217 1 23 HELIX 40 AE4 THR C 224 GLN C 243 1 20 HELIX 41 AE5 SER C 285 GLY C 294 1 10 HELIX 42 AE6 MET C 295 ASN C 311 1 17 HELIX 43 AE7 GLY D 10 LEU D 24 1 15 HELIX 44 AE8 VAL D 38 HIS D 48 1 11 HELIX 45 AE9 ALA D 63 GLU D 68 1 6 HELIX 46 AF1 ASN D 92 CYS D 109 1 18 HELIX 47 AF2 PRO D 120 ALA D 135 1 16 HELIX 48 AF3 THR D 147 GLY D 163 1 17 HELIX 49 AF4 SER D 178 VAL D 180 5 3 HELIX 50 AF5 LEU D 186 VAL D 189 5 4 HELIX 51 AF6 THR D 195 ASN D 208 1 14 HELIX 52 AF7 ASN D 208 LYS D 217 1 10 HELIX 53 AF8 THR D 224 GLY D 244 1 21 HELIX 54 AF9 SER D 285 GLY D 294 1 10 HELIX 55 AG1 MET D 295 PHE D 309 1 15 SHEET 1 AA1 6 VAL A 53 PHE A 58 0 SHEET 2 AA1 6 SER A 28 TYR A 33 1 N LEU A 32 O PHE A 58 SHEET 3 AA1 6 LYS A 2 LEU A 6 1 N VAL A 3 O GLU A 29 SHEET 4 AA1 6 VAL A 72 ILE A 75 1 O LEU A 74 N ALA A 4 SHEET 5 AA1 6 CYS A 113 ILE A 116 1 O GLY A 115 N VAL A 73 SHEET 6 AA1 6 LEU A 143 GLY A 145 1 O PHE A 144 N ILE A 114 SHEET 1 AA2 2 VAL A 173 GLY A 175 0 SHEET 2 AA2 2 ILE A 182 PRO A 184 -1 O LEU A 183 N ILE A 174 SHEET 1 AA3 3 VAL A 249 GLU A 255 0 SHEET 2 AA3 3 PHE A 263 GLY A 271 -1 O PHE A 264 N VAL A 254 SHEET 3 AA3 3 GLY A 274 ARG A 278 -1 O GLY A 274 N GLY A 271 SHEET 1 AA4 6 VAL B 53 PHE B 58 0 SHEET 2 AA4 6 SER B 28 TYR B 33 1 N LEU B 30 O LYS B 54 SHEET 3 AA4 6 LYS B 2 LEU B 6 1 N VAL B 3 O GLU B 29 SHEET 4 AA4 6 VAL B 72 ILE B 75 1 O LEU B 74 N LEU B 6 SHEET 5 AA4 6 CYS B 113 ILE B 116 1 O GLY B 115 N VAL B 73 SHEET 6 AA4 6 LEU B 143 GLY B 145 1 O PHE B 144 N ILE B 114 SHEET 1 AA5 2 VAL B 173 GLY B 175 0 SHEET 2 AA5 2 ILE B 182 PRO B 184 -1 O LEU B 183 N ILE B 174 SHEET 1 AA6 3 VAL B 249 GLU B 255 0 SHEET 2 AA6 3 PHE B 263 GLY B 271 -1 O PHE B 264 N VAL B 254 SHEET 3 AA6 3 GLY B 274 ARG B 278 -1 O GLU B 276 N LEU B 269 SHEET 1 AA7 6 VAL C 53 PHE C 58 0 SHEET 2 AA7 6 SER C 28 TYR C 33 1 N LEU C 32 O PHE C 58 SHEET 3 AA7 6 LYS C 2 LEU C 6 1 N VAL C 3 O GLU C 29 SHEET 4 AA7 6 VAL C 72 ILE C 75 1 O LEU C 74 N LEU C 6 SHEET 5 AA7 6 CYS C 113 ILE C 116 1 O CYS C 113 N VAL C 73 SHEET 6 AA7 6 LEU C 143 GLY C 145 1 O PHE C 144 N ILE C 114 SHEET 1 AA8 2 VAL C 173 GLY C 175 0 SHEET 2 AA8 2 ILE C 182 PRO C 184 -1 O LEU C 183 N ILE C 174 SHEET 1 AA9 3 VAL C 248 GLU C 255 0 SHEET 2 AA9 3 PHE C 263 GLY C 271 -1 O PHE C 264 N VAL C 254 SHEET 3 AA9 3 GLY C 274 ARG C 278 -1 O GLY C 274 N GLY C 271 SHEET 1 AB1 6 LYS D 54 PHE D 58 0 SHEET 2 AB1 6 GLU D 29 TYR D 33 1 N LEU D 30 O LYS D 54 SHEET 3 AB1 6 LYS D 2 LEU D 6 1 N VAL D 3 O GLU D 29 SHEET 4 AB1 6 VAL D 72 ILE D 75 1 O VAL D 72 N ALA D 4 SHEET 5 AB1 6 CYS D 113 ILE D 116 1 O GLY D 115 N VAL D 73 SHEET 6 AB1 6 LEU D 143 GLY D 145 1 O PHE D 144 N ILE D 114 SHEET 1 AB2 2 VAL D 173 GLY D 175 0 SHEET 2 AB2 2 ILE D 182 PRO D 184 -1 O LEU D 183 N ILE D 174 SHEET 1 AB3 3 VAL D 249 GLU D 255 0 SHEET 2 AB3 3 PHE D 263 GLY D 271 -1 O PHE D 264 N VAL D 254 SHEET 3 AB3 3 GLY D 274 ARG D 278 -1 O GLY D 274 N GLY D 271 LINK SG CYS A 113 AG AG A 401 1555 1555 2.75 LINK SG CYS A 251 AG AG A 402 1555 1555 2.75 LINK AG AG A 401 N TRS A 403 1555 1555 2.11 LINK SG CYS B 113 AG AG B 401 1555 1555 2.22 LINK AG AG B 401 N TRS B 402 1555 1555 2.23 LINK SG CYS C 113 AG AG C 401 1555 1555 2.06 LINK AG AG C 401 N TRS C 402 1555 1555 2.20 LINK SG CYS D 113 AG AG D 401 1555 1555 2.36 LINK AG AG D 401 N TRS D 402 1555 1555 2.28 CISPEP 1 ARG A 81 LYS A 82 0 12.15 CISPEP 2 ASN A 119 PRO A 120 0 -3.58 CISPEP 3 ASN B 119 PRO B 120 0 -0.62 CISPEP 4 ASN C 119 PRO C 120 0 -0.53 CISPEP 5 ASN D 119 PRO D 120 0 -0.72 SITE 1 AC1 3 CYS A 113 LEU A 242 TRS A 403 SITE 1 AC2 2 CYS A 251 HOH A 501 SITE 1 AC3 6 ASP A 71 LYS A 111 CYS A 113 LYS A 142 SITE 2 AC3 6 LYS A 272 AG A 401 SITE 1 AC4 4 ASP B 71 CYS B 113 LYS B 142 TRS B 402 SITE 1 AC5 5 ASP B 71 LYS B 111 LYS B 142 LYS B 272 SITE 2 AC5 5 AG B 401 SITE 1 AC6 3 CYS C 113 LEU C 242 TRS C 402 SITE 1 AC7 8 ASP C 71 LYS C 111 ALA C 112 CYS C 113 SITE 2 AC7 8 LYS C 142 LEU C 242 LYS C 272 AG C 401 SITE 1 AC8 4 ASP D 71 CYS D 113 LEU D 242 TRS D 402 SITE 1 AC9 7 ASP D 71 LYS D 111 ALA D 112 CYS D 113 SITE 2 AC9 7 LYS D 142 LYS D 272 AG D 401 CRYST1 50.860 152.830 78.500 90.00 108.75 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019662 0.000000 0.006674 0.00000 SCALE2 0.000000 0.006543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013453 0.00000